Wall clock time and date at job start Tue Mar 31 2020 18:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48495 * 109.47619 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47005 * 29.99997 * 3 2 1 6 6 H 1.48502 * 109.47257 * 150.00156 * 3 2 1 7 7 C 1.37873 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99589 * 0.02562 * 7 2 1 10 10 N 1.46511 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99702 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00581 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.47542 * 180.02562 * 13 11 10 15 15 C 1.46850 * 111.00333 * 66.04416 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.16360 * 15 14 13 17 17 C 1.53120 * 109.27700 * 59.18090 * 16 15 14 18 18 C 1.53120 * 109.15972 * 302.34018 * 17 16 15 19 19 H 1.08997 * 109.50809 * 297.71813 * 18 17 16 20 20 C 1.50700 * 109.50022 * 177.63951 * 18 17 16 21 21 N 1.30718 * 125.52857 * 300.02379 * 20 18 17 22 22 N 1.40433 * 106.79441 * 179.97438 * 21 20 18 23 23 H 0.97003 * 126.82309 * 179.97438 * 22 21 20 24 24 C 1.34429 * 106.35688 * 0.02562 * 22 21 20 25 25 C 1.50701 * 125.96664 * 179.97438 * 24 22 21 26 26 C 1.53003 * 117.49327 * 33.65322 * 25 24 22 27 27 C 1.52999 * 117.49842 * 325.02869 * 25 24 22 28 28 N 1.30834 * 108.07453 * 359.75362 * 24 22 21 29 29 C 1.46850 * 110.99945 * 301.83348 * 14 13 11 30 30 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47583 * 60.00076 * 9 7 2 32 32 H 1.08998 * 109.47107 * 299.99813 * 9 7 2 33 33 H 0.96995 * 119.99624 * 359.97438 * 10 9 7 34 34 H 1.09000 * 109.47215 * 59.99207 * 13 11 10 35 35 H 1.09007 * 109.47214 * 299.99929 * 13 11 10 36 36 H 1.08995 * 109.45831 * 54.14149 * 15 14 13 37 37 H 1.08998 * 109.45719 * 294.17998 * 15 14 13 38 38 H 1.08998 * 109.49982 * 179.12006 * 16 15 14 39 39 H 1.08992 * 109.50379 * 299.23548 * 16 15 14 40 40 H 1.08996 * 109.52458 * 62.25353 * 17 16 15 41 41 H 1.09005 * 109.51651 * 182.44129 * 17 16 15 42 42 H 1.08994 * 115.55055 * 179.35243 * 25 24 22 43 43 H 1.09001 * 117.50073 * 359.97438 * 26 25 24 44 44 H 1.08995 * 117.50043 * 145.02477 * 26 25 24 45 45 H 1.09000 * 117.49774 * 214.97268 * 27 25 24 46 46 H 1.09002 * 117.49717 * 359.97438 * 27 25 24 47 47 H 1.09007 * 109.46080 * 65.82377 * 29 14 13 48 48 H 1.09001 * 109.45527 * 305.85274 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 1.7538 -4.8833 -0.0044 12 8 0.5614 -5.1050 -0.0055 13 6 2.7331 -6.0288 -0.0048 14 7 1.9987 -7.3009 -0.0073 15 6 1.2548 -7.4768 -1.2612 16 6 0.6225 -8.8701 -1.2896 17 6 -0.3178 -9.0231 -0.0908 18 6 0.4713 -8.7876 1.2001 19 1 1.2521 -9.5425 1.2922 20 6 -0.4590 -8.8791 2.3821 21 7 -1.5032 -8.1200 2.5875 22 7 -2.0806 -8.5426 3.7959 23 1 -2.8710 -8.1758 4.2222 24 6 -1.3197 -9.5557 4.2452 25 6 -1.5437 -10.3350 5.5154 26 6 -2.9903 -10.5619 5.9592 27 6 -2.1020 -9.5760 6.7208 28 7 -0.3534 -9.7501 3.3848 29 6 1.1080 -7.3967 1.1564 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5574 0.8880 33 1 3.1567 -3.4353 -0.0029 34 1 3.3592 -5.9719 0.8856 35 1 3.3605 -5.9701 -0.8943 36 1 1.9358 -7.3696 -2.1054 37 1 0.4720 -6.7212 -1.3280 38 1 0.0575 -8.9945 -2.2134 39 1 1.4056 -9.6263 -1.2367 40 1 -1.1232 -8.2923 -0.1640 41 1 -0.7372 -10.0292 -0.0830 42 1 -0.8262 -11.1319 5.7107 43 1 -3.7799 -10.1470 5.3326 44 1 -3.2247 -11.5081 6.4466 45 1 -1.7521 -9.8738 7.7093 46 1 -2.3068 -8.5128 6.5952 47 1 0.3258 -6.6415 1.0781 48 1 1.6825 -7.2314 2.0678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766256521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:23 Heat of formation + Delta-G solvation = 71.757677 kcal Electronic energy + Delta-G solvation = -28500.401964 eV Core-core repulsion = 24592.497200 eV Total energy + Delta-G solvation = -3907.904764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.34627 -39.85017 -37.95907 -37.43994 -34.33697 -33.73459 -32.52911 -32.32219 -31.65252 -29.73785 -28.26330 -26.31010 -24.83150 -23.89678 -23.30509 -22.99586 -22.14730 -20.83499 -20.56769 -19.68151 -19.29052 -18.09534 -17.13763 -16.35392 -15.89988 -15.76486 -15.65009 -15.06155 -14.96426 -14.77584 -14.51317 -14.41971 -14.14698 -13.61183 -13.27738 -13.18298 -12.80541 -12.38816 -12.25081 -12.19101 -12.00136 -11.95810 -11.88544 -11.63889 -11.41560 -11.13571 -11.00035 -10.98401 -10.77441 -10.63944 -10.51573 -10.38370 -10.32360 -10.06395 -10.00454 -9.70938 -9.40547 -9.37849 -8.73801 -7.88527 -7.73990 -6.17692 -4.24804 1.40798 2.45947 2.65878 3.23040 3.29170 3.31635 3.31690 3.40292 3.48816 4.03954 4.13270 4.17355 4.33713 4.38146 4.42756 4.68707 4.75928 4.95209 5.03057 5.11128 5.15783 5.18241 5.27582 5.33064 5.46041 5.49462 5.54761 5.57751 5.66740 5.68974 5.71885 5.83692 5.99173 6.06524 6.17084 6.22347 6.24585 6.34921 6.43863 6.61390 6.88772 7.11033 7.22753 7.30682 7.45166 7.50652 7.65576 7.96129 8.02717 8.61190 8.76425 9.08972 9.41963 10.92397 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002557 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.067837 B =10948.145668 C =12630.632383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.711 5.711 11 C 0.464 3.536 12 O -0.550 6.550 13 C 0.033 3.967 14 N -0.512 5.512 15 C 0.037 3.963 16 C -0.109 4.109 17 C -0.110 4.110 18 C 0.014 3.986 19 H 0.100 0.900 20 C 0.241 3.759 21 N -0.294 5.294 22 N -0.485 5.485 23 H 0.437 0.563 24 C 0.308 3.692 25 C -0.083 4.083 26 C -0.165 4.165 27 C -0.165 4.165 28 N -0.532 5.532 29 C 0.043 3.957 30 H 0.266 0.734 31 H 0.025 0.975 32 H 0.025 0.975 33 H 0.390 0.610 34 H 0.100 0.900 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.142 0.858 43 H 0.097 0.903 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.374 -22.792 8.509 24.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.129 3.871 10 N -0.359 5.359 11 C 0.248 3.752 12 O -0.431 6.431 13 C -0.099 4.099 14 N -0.235 5.235 15 C -0.090 4.090 16 C -0.147 4.147 17 C -0.148 4.148 18 C -0.007 4.007 19 H 0.118 0.882 20 C -0.042 4.042 21 N -0.122 5.122 22 N -0.202 5.202 23 H 0.282 0.718 24 C 0.030 3.970 25 C -0.104 4.104 26 C -0.204 4.204 27 C -0.203 4.203 28 N -0.261 5.261 29 C -0.086 4.086 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.223 0.777 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.160 0.840 43 H 0.115 0.885 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.970 -22.865 8.017 24.310 hybrid contribution -0.264 1.981 0.487 2.057 sum -2.235 -20.885 8.504 22.660 Atomic orbital electron populations 1.69980 1.06128 1.27277 1.48946 1.24963 0.94914 0.99488 0.94705 0.86416 0.79632 0.82636 0.78241 1.20431 1.21012 1.19725 1.21237 0.93261 0.90504 1.53147 0.91895 1.19075 0.88360 0.82147 0.97558 1.46612 1.11102 1.06495 1.71711 1.21833 0.90396 0.85316 0.77658 1.90571 1.17065 1.84301 1.51140 1.22277 0.96253 0.86767 1.04618 1.62340 1.28496 1.29628 1.03022 1.22300 0.97964 0.97499 0.91260 1.21513 0.98445 0.97292 0.97462 1.21593 0.98355 1.01735 0.93138 1.19524 0.93970 0.99579 0.87675 0.88224 1.24201 0.94002 0.90157 0.95888 1.78207 1.12747 1.22767 0.98473 1.47976 1.25799 1.27737 1.18704 0.71807 1.23190 0.88829 0.89266 0.95686 1.20396 0.99440 1.01766 0.88832 1.23148 0.91937 1.02165 1.03119 1.23161 1.02664 0.98331 0.96150 1.70299 1.24106 1.27601 1.04056 1.22404 0.97397 0.96034 0.92766 0.92471 0.95675 0.95721 0.77699 0.88222 0.88100 0.91255 0.91548 0.91356 0.91298 0.91066 0.92059 0.84006 0.88487 0.86987 0.86938 0.88368 0.89039 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.38 13.29 55.43 0.74 -25.64 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 21.01 29.54 -169.99 -5.02 15.98 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.67 5.43 -5.19 -0.03 6.65 16 10 N -0.71 -14.92 5.55 -61.47 -0.34 -15.26 16 11 C 0.46 9.09 7.25 -10.99 -0.08 9.01 16 12 O -0.55 -12.77 11.62 5.55 0.06 -12.71 16 13 C 0.03 0.47 5.86 -4.98 -0.03 0.44 16 14 N -0.51 -7.51 4.86 -236.11 -1.15 -8.66 16 15 C 0.04 0.54 5.10 -3.83 -0.02 0.52 16 16 C -0.11 -1.31 6.09 -26.65 -0.16 -1.48 16 17 C -0.11 -1.46 5.27 -26.61 -0.14 -1.60 16 18 C 0.01 0.20 2.82 -91.69 -0.26 -0.06 16 19 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 20 C 0.24 3.70 6.66 -156.85 -1.04 2.65 16 21 N -0.29 -4.68 12.80 32.42 0.41 -4.26 16 22 N -0.48 -5.74 7.39 32.62 0.24 -5.50 16 23 H 0.44 3.72 8.96 -182.34 -1.63 2.09 16 24 C 0.31 3.56 7.67 -155.69 -1.19 2.36 16 25 C -0.08 -0.60 6.33 -91.77 -0.58 -1.18 16 26 C -0.17 -0.78 10.21 -26.72 -0.27 -1.05 16 27 C -0.16 -0.83 10.22 -26.73 -0.27 -1.10 16 28 N -0.53 -7.68 11.19 -8.16 -0.09 -7.77 16 29 C 0.04 0.68 4.24 -3.83 -0.02 0.67 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.39 7.00 8.32 -40.82 -0.34 6.66 16 34 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.10 1.23 8.06 -51.93 -0.42 0.81 16 36 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 37 H 0.07 1.18 6.00 -51.93 -0.31 0.87 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.14 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.09 1.82 5.36 -51.92 -0.28 1.54 16 48 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 LS Contribution 390.05 15.07 5.88 5.88 Total: -1.00 -34.98 390.05 -12.63 -47.61 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.85 Total: 8.01 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: -4.52 Total: 2.32 kcal Atomic # 7 Polarization: -66.92 SS G_CDS: -0.19 Total: -67.10 kcal Atomic # 8 Polarization: -12.77 SS G_CDS: 0.06 Total: -12.71 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.98 -12.63 -47.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766256521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.370 kcal (2) G-P(sol) polarization free energy of solvation -34.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds