Wall clock time and date at job start Tue Mar 31 2020 18:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99964 * 2 1 4 4 H 1.48495 * 109.47619 * 270.00034 * 3 2 1 5 5 H 1.48501 * 109.47005 * 29.99997 * 3 2 1 6 6 H 1.48502 * 109.47257 * 150.00156 * 3 2 1 7 7 C 1.37873 * 120.00295 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00555 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99589 * 0.02562 * 7 2 1 10 10 N 1.46511 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34771 * 119.99702 * 180.02562 * 10 9 7 12 12 O 1.21285 * 120.00581 * 0.02562 * 11 10 9 13 13 C 1.50699 * 120.00016 * 180.02562 * 11 10 9 14 14 N 1.46895 * 109.47542 * 180.02562 * 13 11 10 15 15 C 1.46850 * 111.00333 * 66.04416 * 14 13 11 16 16 C 1.53036 * 109.52384 * 174.16360 * 15 14 13 17 17 C 1.53120 * 109.27700 * 59.18090 * 16 15 14 18 18 C 1.53120 * 109.15972 * 302.34018 * 17 16 15 19 19 H 1.08997 * 109.50809 * 297.71813 * 18 17 16 20 20 C 1.50700 * 109.50022 * 177.63951 * 18 17 16 21 21 N 1.30718 * 125.52857 * 300.02379 * 20 18 17 22 22 N 1.40433 * 106.79441 * 179.97438 * 21 20 18 23 23 H 0.97003 * 126.82309 * 179.97438 * 22 21 20 24 24 C 1.34429 * 106.35688 * 0.02562 * 22 21 20 25 25 C 1.50701 * 125.96664 * 179.97438 * 24 22 21 26 26 C 1.53003 * 117.49327 * 33.65322 * 25 24 22 27 27 C 1.52999 * 117.49842 * 325.02869 * 25 24 22 28 28 N 1.30834 * 108.07453 * 359.75362 * 24 22 21 29 29 C 1.46850 * 110.99945 * 301.83348 * 14 13 11 30 30 H 0.97003 * 119.99918 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47583 * 60.00076 * 9 7 2 32 32 H 1.08998 * 109.47107 * 299.99813 * 9 7 2 33 33 H 0.96995 * 119.99624 * 359.97438 * 10 9 7 34 34 H 1.09000 * 109.47215 * 59.99207 * 13 11 10 35 35 H 1.09007 * 109.47214 * 299.99929 * 13 11 10 36 36 H 1.08995 * 109.45831 * 54.14149 * 15 14 13 37 37 H 1.08998 * 109.45719 * 294.17998 * 15 14 13 38 38 H 1.08998 * 109.49982 * 179.12006 * 16 15 14 39 39 H 1.08992 * 109.50379 * 299.23548 * 16 15 14 40 40 H 1.08996 * 109.52458 * 62.25353 * 17 16 15 41 41 H 1.09005 * 109.51651 * 182.44129 * 17 16 15 42 42 H 1.08994 * 115.55055 * 179.35243 * 25 24 22 43 43 H 1.09001 * 117.50073 * 359.97438 * 26 25 24 44 44 H 1.08995 * 117.50043 * 145.02477 * 26 25 24 45 45 H 1.09000 * 117.49774 * 214.97268 * 27 25 24 46 46 H 1.09002 * 117.49717 * 359.97438 * 27 25 24 47 47 H 1.09007 * 109.46080 * 65.82377 * 29 14 13 48 48 H 1.09001 * 109.45527 * 305.85274 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 7 2.2031 -3.6127 -0.0027 11 6 1.7538 -4.8833 -0.0044 12 8 0.5614 -5.1050 -0.0055 13 6 2.7331 -6.0288 -0.0048 14 7 1.9987 -7.3009 -0.0073 15 6 1.2548 -7.4768 -1.2612 16 6 0.6225 -8.8701 -1.2896 17 6 -0.3178 -9.0231 -0.0908 18 6 0.4713 -8.7876 1.2001 19 1 1.2521 -9.5425 1.2922 20 6 -0.4590 -8.8791 2.3821 21 7 -1.5032 -8.1200 2.5875 22 7 -2.0806 -8.5426 3.7959 23 1 -2.8710 -8.1758 4.2222 24 6 -1.3197 -9.5557 4.2452 25 6 -1.5437 -10.3350 5.5154 26 6 -2.9903 -10.5619 5.9592 27 6 -2.1020 -9.5760 6.7208 28 7 -0.3534 -9.7501 3.3848 29 6 1.1080 -7.3967 1.1564 30 1 -0.4850 0.8401 -0.0004 31 1 0.6247 -2.5563 -0.8919 32 1 0.6241 -2.5574 0.8880 33 1 3.1567 -3.4353 -0.0029 34 1 3.3592 -5.9719 0.8856 35 1 3.3605 -5.9701 -0.8943 36 1 1.9358 -7.3696 -2.1054 37 1 0.4720 -6.7212 -1.3280 38 1 0.0575 -8.9945 -2.2134 39 1 1.4056 -9.6263 -1.2367 40 1 -1.1232 -8.2923 -0.1640 41 1 -0.7372 -10.0292 -0.0830 42 1 -0.8262 -11.1319 5.7107 43 1 -3.7799 -10.1470 5.3326 44 1 -3.2247 -11.5081 6.4466 45 1 -1.7521 -9.8738 7.7093 46 1 -2.3068 -8.5128 6.5952 47 1 0.3258 -6.6415 1.0781 48 1 1.6825 -7.2314 2.0678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766256521.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:23 Heat of formation + Delta-G solvation = 45.658775 kcal Electronic energy + Delta-G solvation = -28501.533697 eV Core-core repulsion = 24592.497200 eV Total energy + Delta-G solvation = -3909.036497 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.35607 -41.29345 -39.17519 -38.17773 -36.18922 -34.99458 -34.38688 -33.56272 -32.70735 -30.83852 -30.02708 -27.94866 -25.70675 -25.05197 -24.84445 -23.74273 -23.37172 -21.86221 -21.59761 -21.29955 -20.44782 -19.05984 -18.87736 -17.58593 -17.31577 -16.98422 -16.76141 -16.68599 -16.35394 -15.92177 -15.86662 -15.56175 -15.31792 -15.11597 -14.59704 -14.25900 -14.11188 -13.95928 -13.79637 -13.50754 -13.36442 -12.92655 -12.85815 -12.77422 -12.71984 -12.53110 -12.26453 -12.16175 -12.05758 -11.75090 -11.66977 -11.58033 -11.51392 -11.46331 -11.30731 -11.15072 -11.04372 -10.82496 -10.35193 -9.81275 -9.16648 -8.32427 -6.49818 0.45173 1.40030 1.42749 1.54039 1.56657 1.64453 1.73126 2.30354 2.59408 2.62150 2.89122 2.98876 3.02032 3.44435 3.63950 3.74188 3.81526 3.91806 3.95388 4.04475 4.13480 4.19156 4.26346 4.42683 4.51872 4.53129 4.58557 4.67911 4.76160 4.90521 4.92694 4.94805 4.99400 5.02496 5.08344 5.12234 5.12856 5.14975 5.19365 5.20185 5.30975 5.43501 5.49789 5.69768 5.81686 5.90159 5.99426 6.05260 6.62184 6.89671 6.99517 7.20285 7.49959 8.79587 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.011993 B = 0.002557 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2334.067837 B =10948.145668 C =12630.632383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.254 1.254 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.459 3.541 12 O -0.589 6.589 13 C 0.043 3.957 14 N -0.498 5.498 15 C 0.036 3.964 16 C -0.101 4.101 17 C -0.104 4.104 18 C 0.019 3.981 19 H 0.113 0.887 20 C 0.231 3.769 21 N -0.341 5.341 22 N -0.480 5.480 23 H 0.449 0.551 24 C 0.318 3.682 25 C -0.106 4.106 26 C -0.148 4.148 27 C -0.154 4.154 28 N -0.559 5.559 29 C 0.051 3.949 30 H 0.268 0.732 31 H -0.017 1.017 32 H -0.021 1.021 33 H 0.409 0.591 34 H 0.126 0.874 35 H 0.137 0.863 36 H 0.092 0.908 37 H 0.024 0.976 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.039 0.961 41 H 0.075 0.925 42 H 0.151 0.849 43 H 0.097 0.903 44 H 0.135 0.865 45 H 0.133 0.867 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.921 -24.142 9.243 25.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.593 4.593 8 H 0.103 0.897 9 C 0.146 3.854 10 N -0.358 5.358 11 C 0.246 3.754 12 O -0.472 6.472 13 C -0.089 4.089 14 N -0.220 5.220 15 C -0.092 4.092 16 C -0.139 4.139 17 C -0.143 4.143 18 C -0.002 4.002 19 H 0.131 0.869 20 C -0.052 4.052 21 N -0.170 5.170 22 N -0.199 5.199 23 H 0.296 0.704 24 C 0.041 3.959 25 C -0.127 4.127 26 C -0.186 4.186 27 C -0.193 4.193 28 N -0.288 5.288 29 C -0.078 4.078 30 H 0.077 0.923 31 H 0.001 0.999 32 H -0.003 1.003 33 H 0.244 0.756 34 H 0.144 0.856 35 H 0.155 0.845 36 H 0.110 0.890 37 H 0.043 0.957 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.094 0.906 42 H 0.169 0.831 43 H 0.115 0.885 44 H 0.153 0.847 45 H 0.151 0.849 46 H 0.112 0.888 47 H 0.067 0.933 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.349 -24.250 8.760 25.786 hybrid contribution -1.089 2.318 0.337 2.583 sum -0.741 -21.932 9.097 23.755 Atomic orbital electron populations 1.70153 1.08386 1.28549 1.50084 1.26117 0.95783 1.04087 0.93829 0.85139 0.78491 0.76794 0.78697 1.19439 1.20997 1.17789 1.21642 0.94348 0.90589 1.52759 0.89686 1.18449 0.88724 0.84713 0.93504 1.46367 1.11123 1.05824 1.72513 1.22971 0.90867 0.85830 0.75771 1.90596 1.19498 1.84852 1.52212 1.22497 0.95044 0.83802 1.07552 1.62457 1.27797 1.28989 1.02709 1.22360 0.97368 0.97770 0.91698 1.21510 0.98715 0.96285 0.97377 1.21540 0.97798 1.01485 0.93475 1.19509 0.94179 0.98514 0.87994 0.86927 1.24392 0.94014 0.90326 0.96444 1.78118 1.13890 1.24334 1.00679 1.47867 1.26249 1.27907 1.17842 0.70365 1.23987 0.87403 0.88398 0.96116 1.20631 1.01777 1.02548 0.87789 1.23287 0.90127 1.03046 1.02102 1.23285 1.01753 0.98194 0.96040 1.70297 1.25669 1.28239 1.04635 1.22195 0.96282 0.96103 0.93197 0.92292 0.99876 1.00257 0.75559 0.85597 0.84512 0.89011 0.95717 0.89815 0.89018 0.94164 0.90612 0.83123 0.88481 0.84735 0.84926 0.88844 0.93307 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.59 13.29 21.45 0.28 -57.31 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.99 42.95 29.54 68.60 2.03 44.97 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 7 C -0.56 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.09 4.23 7.60 -2.91 -0.02 4.21 16 9 C 0.27 15.20 5.43 85.63 0.46 15.67 16 10 N -0.71 -30.35 5.55 -466.77 -2.59 -32.94 16 11 C 0.46 18.46 7.25 87.66 0.64 19.10 16 12 O -0.59 -29.28 11.62 -3.04 -0.04 -29.31 16 13 C 0.04 1.16 5.86 85.56 0.50 1.66 16 14 N -0.50 -14.12 4.86 -900.92 -4.38 -18.50 16 15 C 0.04 1.00 5.10 86.32 0.44 1.44 16 16 C -0.10 -2.30 6.09 30.65 0.19 -2.12 16 17 C -0.10 -2.82 5.27 30.67 0.16 -2.66 16 18 C 0.02 0.56 2.82 -11.49 -0.03 0.53 16 19 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 20 C 0.23 7.39 6.66 138.63 0.92 8.31 16 21 N -0.34 -11.56 12.80 -51.33 -0.66 -12.22 16 22 N -0.48 -11.82 7.39 -50.70 -0.37 -12.19 16 23 H 0.45 7.97 8.96 -213.10 -1.91 6.06 16 24 C 0.32 7.35 7.67 138.23 1.06 8.41 16 25 C -0.11 -1.39 6.33 -11.54 -0.07 -1.47 16 26 C -0.15 -1.05 10.21 30.60 0.31 -0.74 16 27 C -0.15 -1.25 10.22 30.60 0.31 -0.94 16 28 N -0.56 -16.34 11.19 -179.72 -2.01 -18.35 16 29 C 0.05 1.70 4.24 86.32 0.37 2.07 16 30 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 31 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 32 H -0.02 -1.32 8.14 -2.39 -0.02 -1.34 16 33 H 0.41 14.29 8.32 -92.71 -0.77 13.52 16 34 H 0.13 2.87 8.14 -2.39 -0.02 2.85 16 35 H 0.14 2.85 8.06 -2.38 -0.02 2.83 16 36 H 0.09 2.16 8.06 -2.39 -0.02 2.14 16 37 H 0.02 0.92 6.00 -2.39 -0.01 0.90 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.15 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 45 H 0.13 0.57 8.14 -2.39 -0.02 0.56 16 46 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.05 2.09 5.36 -2.38 -0.01 2.08 16 48 H 0.06 2.01 8.12 -2.39 -0.02 1.99 16 Total: -1.00 -82.47 390.05 -3.47 -85.94 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: -1.69 Total: 30.68 kcal Atomic # 6 Polarization: 13.27 SS G_CDS: 5.96 Total: 19.22 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -9.72 Total: -151.51 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.04 Total: -29.31 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -82.47 -3.47 -85.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766256521.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.599 kcal (2) G-P(sol) polarization free energy of solvation -82.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds