Wall clock time and date at job start Tue Mar 31 2020 17:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47560 * 2 1 4 4 C 1.46498 * 119.99632 * 275.00036 * 3 2 1 5 5 C 1.50700 * 109.46930 * 280.13971 * 4 3 2 6 6 H 1.07998 * 120.00119 * 4.10781 * 5 4 3 7 7 C 1.37883 * 120.00066 * 184.09764 * 5 4 3 8 8 N 1.31509 * 119.99816 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00115 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47095 * 90.00527 * 9 7 5 11 11 H 1.48495 * 109.47497 * 210.00166 * 9 7 5 12 12 H 1.48495 * 109.47217 * 330.00617 * 9 7 5 13 13 S 1.65596 * 120.00082 * 94.99361 * 3 2 1 14 14 O 1.42092 * 106.40414 * 330.08212 * 13 3 2 15 15 O 1.42097 * 106.40232 * 197.15938 * 13 3 2 16 16 N 1.65606 * 107.21672 * 83.62103 * 13 3 2 17 17 C 1.46499 * 119.99848 * 65.48933 * 16 13 3 18 18 C 1.53000 * 109.47139 * 165.72142 * 17 16 13 19 19 H 1.08996 * 109.46785 * 64.99853 * 18 17 16 20 20 C 1.52998 * 109.47182 * 185.00051 * 18 17 16 21 21 N 1.46906 * 109.47056 * 304.99760 * 18 17 16 22 22 C 1.46841 * 110.99659 * 180.02562 * 21 18 17 23 23 C 1.53046 * 109.51238 * 185.84824 * 22 21 18 24 24 C 1.53121 * 109.27456 * 300.80175 * 23 22 21 25 25 C 1.53117 * 109.15087 * 57.67057 * 24 23 22 26 26 C 1.46848 * 110.99780 * 304.21003 * 21 18 17 27 27 H 1.09003 * 109.46575 * 59.99890 * 1 2 3 28 28 H 1.08990 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47242 * 300.00788 * 1 2 3 30 30 H 1.08997 * 109.47189 * 239.99673 * 2 1 3 31 31 H 1.09003 * 109.46575 * 120.00110 * 2 1 3 32 32 H 1.08994 * 109.47590 * 40.14578 * 4 3 2 33 33 H 1.09008 * 109.47131 * 160.14536 * 4 3 2 34 34 H 0.96999 * 120.00108 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00222 * 245.48659 * 16 13 3 36 36 H 1.09001 * 109.47351 * 45.71738 * 17 16 13 37 37 H 1.09002 * 109.47306 * 285.71907 * 17 16 13 38 38 H 1.09001 * 109.47046 * 180.02562 * 20 18 17 39 39 H 1.09007 * 109.47163 * 299.99524 * 20 18 17 40 40 H 1.08997 * 109.47404 * 59.99635 * 20 18 17 41 41 H 1.09003 * 109.46403 * 305.85525 * 22 21 18 42 42 H 1.08998 * 109.46812 * 65.83232 * 22 21 18 43 43 H 1.08991 * 109.50391 * 60.75547 * 23 22 21 44 44 H 1.08997 * 109.50208 * 180.87536 * 23 22 21 45 45 H 1.08998 * 109.53094 * 297.76381 * 24 23 22 46 46 H 1.08997 * 109.57218 * 177.60144 * 24 23 22 47 47 H 1.08998 * 109.49965 * 182.39801 * 25 24 23 48 48 H 1.08996 * 109.53744 * 62.29693 * 25 24 23 49 49 H 1.09001 * 109.45853 * 294.17572 * 26 21 18 50 50 H 1.09001 * 109.45980 * 54.15635 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1085 -1.2639 5 6 3.4374 1.6928 -1.9438 6 1 4.0483 0.9126 -1.5143 7 6 3.8277 2.3083 -3.1142 8 7 3.0840 3.2586 -3.6370 9 14 5.4128 1.7925 -3.9573 10 1 5.1280 0.6979 -4.9196 11 1 5.9874 2.9531 -4.6838 12 1 6.3828 1.3163 -2.9388 13 16 2.4122 2.1202 1.4286 14 8 1.5764 1.5433 2.4225 15 8 2.4525 3.5151 1.1610 16 7 3.9617 1.6707 1.8022 17 6 5.0732 2.0925 0.9462 18 6 6.3966 1.8638 1.6792 19 1 6.5441 0.7956 1.8379 20 6 7.5480 2.4182 0.8379 21 7 6.3629 2.5517 2.9768 22 6 7.6199 2.3543 3.7098 23 6 7.4953 2.9585 5.1104 24 6 7.1822 4.4526 4.9903 25 6 5.8947 4.6325 4.1814 26 6 6.0660 3.9799 2.8077 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3118 1.8791 -1.9109 33 1 2.1841 3.1801 -1.0656 34 1 3.3586 3.6919 -4.4602 35 1 4.1333 1.1283 2.5878 36 1 4.9676 3.1511 0.7087 37 1 5.0632 1.5107 0.0246 38 1 8.4909 2.2549 1.3599 39 1 7.5731 1.9078 -0.1250 40 1 7.4005 3.4864 0.6791 41 1 7.8289 1.2876 3.7917 42 1 8.4334 2.8436 3.1742 43 1 6.6909 2.4603 5.6514 44 1 8.4336 2.8257 5.6488 45 1 8.0045 4.9576 4.4834 46 1 7.0503 4.8791 5.9846 47 1 5.6893 5.6956 4.0560 48 1 5.0647 4.1611 4.7076 49 1 6.8871 4.4611 2.2764 50 1 5.1459 4.0941 2.2345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800013694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:52 Heat of formation + Delta-G solvation = -87.486630 kcal Electronic energy + Delta-G solvation = -29575.075622 eV Core-core repulsion = 25763.416708 eV Total energy + Delta-G solvation = -3811.658915 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.52177 -36.55375 -36.01742 -35.70131 -35.08470 -33.03386 -32.70149 -30.80686 -29.88512 -29.67923 -26.62144 -25.61274 -24.19040 -23.13268 -22.95144 -21.64459 -20.71152 -19.15395 -18.59629 -17.02974 -16.75788 -16.57105 -16.15266 -15.68237 -15.13061 -14.84513 -14.55321 -14.39127 -14.20969 -13.93388 -13.61767 -13.38761 -13.20853 -12.89337 -12.74567 -12.53576 -12.30260 -12.03604 -12.00192 -11.90710 -11.80575 -11.63352 -11.39548 -11.24737 -11.21673 -11.08628 -11.06335 -10.93831 -10.75625 -10.61691 -10.50298 -10.36383 -10.33395 -10.12760 -9.98859 -9.76557 -8.82183 -8.50846 -8.18257 -8.00940 -6.11963 -4.18327 1.42398 3.21683 3.28916 3.30197 3.65188 3.93805 4.31460 4.33875 4.75941 4.80706 4.88405 4.96387 5.19166 5.21137 5.21921 5.28720 5.37059 5.43405 5.46970 5.51998 5.59302 5.68945 5.73314 5.79357 5.81740 5.85730 5.87245 5.92679 5.98388 6.10168 6.11777 6.13324 6.18891 6.23794 6.34192 6.37936 6.42005 6.53409 6.72221 6.77729 7.19943 7.21492 7.37392 7.44321 7.58154 7.75807 7.86800 8.16540 8.86013 9.46905 10.95959 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.005153 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.283297 B = 5432.676793 C = 7070.452573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.994 5.994 4 C 0.243 3.757 5 C -0.537 4.537 6 H 0.064 0.936 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.272 1.272 13 S 2.786 3.214 14 O -1.003 7.003 15 O -0.982 6.982 16 N -1.118 6.118 17 C 0.126 3.874 18 C 0.075 3.925 19 H 0.087 0.913 20 C -0.187 4.187 21 N -0.526 5.526 22 C 0.053 3.947 23 C -0.116 4.116 24 C -0.120 4.120 25 C -0.117 4.117 26 C 0.044 3.956 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.264 0.736 35 H 0.411 0.589 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.057 0.943 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.070 0.930 49 H 0.034 0.966 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.956 -3.142 12.630 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.835 5.835 4 C 0.121 3.879 5 C -0.576 4.576 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.794 3.206 14 O -0.987 6.987 15 O -0.965 6.965 16 N -0.878 5.878 17 C -0.001 4.001 18 C -0.034 4.034 19 H 0.105 0.895 20 C -0.246 4.246 21 N -0.250 5.250 22 C -0.075 4.075 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.084 4.084 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.244 0.756 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.089 0.911 49 H 0.052 0.948 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.960 -2.497 13.081 15.026 hybrid contribution 1.942 -0.381 -1.109 2.269 sum 8.902 -2.878 11.972 15.194 Atomic orbital electron populations 1.22214 0.97067 1.01261 1.02453 1.20924 0.93577 0.82998 1.01897 1.57750 1.78768 1.22875 1.24146 1.19191 0.97107 0.92577 0.79013 1.21526 1.07315 1.20584 1.08211 0.91827 1.24945 0.97000 0.94777 0.97069 1.69931 1.37959 1.24243 1.20390 0.86644 0.83619 0.78163 0.79841 1.20674 1.21196 1.19716 1.01676 0.72713 0.73719 0.72505 1.93538 1.65728 1.79808 1.59641 1.93561 1.86671 1.31086 1.85226 1.55703 1.24252 1.70015 1.37810 1.21484 0.84138 1.01529 0.92921 1.21949 0.94539 0.98885 0.88054 0.89523 1.22414 0.98551 1.02402 1.01254 1.62135 1.32644 1.11966 1.18270 1.22087 0.90728 1.00408 0.94271 1.21574 1.01433 0.95850 0.96495 1.21576 0.97920 0.96333 0.99967 1.21585 0.97938 1.00137 0.95853 1.22242 1.01622 0.87359 0.97165 0.92164 0.92514 0.92488 0.90276 0.92223 0.94945 0.92669 0.92614 0.75608 0.90496 0.89270 0.92443 0.91333 0.91985 0.91106 0.94794 0.91164 0.92057 0.92554 0.92178 0.91675 0.91149 0.94757 0.89240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.75 10.24 37.16 0.38 -2.37 16 2 C 0.13 2.30 6.02 -4.04 -0.02 2.27 16 3 N -0.99 -20.18 2.84 -115.66 -0.33 -20.51 16 4 C 0.24 5.90 5.46 -5.19 -0.03 5.87 16 5 C -0.54 -13.36 8.50 -34.44 -0.29 -13.66 16 6 H 0.06 1.50 6.47 -52.49 -0.34 1.16 16 7 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -24.79 13.29 55.43 0.74 -24.06 16 9 Si 0.89 19.90 29.54 -169.99 -5.02 14.87 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 S 2.79 55.18 6.07 -107.50 -0.65 54.53 16 14 O -1.00 -20.80 17.17 -57.18 -0.98 -21.78 16 15 O -0.98 -22.75 16.01 -57.18 -0.92 -23.67 16 16 N -1.12 -18.10 5.81 -10.61 -0.06 -18.16 16 17 C 0.13 2.05 5.05 -4.04 -0.02 2.03 16 18 C 0.08 0.99 2.55 -67.71 -0.17 0.81 16 19 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 20 C -0.19 -2.33 8.50 37.16 0.32 -2.02 16 21 N -0.53 -6.56 4.33 -226.68 -0.98 -7.54 16 22 C 0.05 0.55 4.89 -3.83 -0.02 0.53 16 23 C -0.12 -1.10 6.09 -26.65 -0.16 -1.26 16 24 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 25 C -0.12 -1.38 6.09 -26.65 -0.16 -1.55 16 26 C 0.04 0.59 4.67 -3.83 -0.02 0.57 16 27 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.96 7.96 -51.93 -0.41 0.54 16 30 H 0.08 1.36 8.09 -51.93 -0.42 0.94 16 31 H 0.06 0.92 7.79 -51.93 -0.40 0.51 16 32 H 0.03 0.83 8.10 -51.93 -0.42 0.40 16 33 H 0.06 1.49 6.77 -51.92 -0.35 1.14 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 35 H 0.41 5.81 8.56 -34.48 -0.30 5.52 16 36 H 0.08 1.40 6.13 -51.93 -0.32 1.09 16 37 H 0.09 1.58 5.86 -51.93 -0.30 1.28 16 38 H 0.06 0.62 6.54 -51.93 -0.34 0.28 16 39 H 0.07 0.90 8.14 -51.92 -0.42 0.47 16 40 H 0.06 0.81 6.63 -51.93 -0.34 0.47 16 41 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 42 H 0.03 0.35 6.63 -51.93 -0.34 0.01 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.03 0.45 6.71 -51.93 -0.35 0.10 16 50 H 0.09 1.43 6.01 -51.93 -0.31 1.12 16 LS Contribution 391.97 15.07 5.91 5.91 Total: -1.00 -29.89 391.97 -11.50 -41.38 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.74 Total: 7.51 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -0.46 Total: -8.49 kcal Atomic # 7 Polarization: -69.62 SS G_CDS: -0.64 Total: -70.26 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.90 Total: -45.45 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.87 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.65 Total: 54.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.89 -11.50 -41.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800013694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.103 kcal (2) G-P(sol) polarization free energy of solvation -29.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds