Wall clock time and date at job start Tue Mar 31 2020 17:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47560 * 2 1 4 4 C 1.46498 * 119.99632 * 275.00036 * 3 2 1 5 5 C 1.50700 * 109.46930 * 280.13971 * 4 3 2 6 6 H 1.07998 * 120.00119 * 4.10781 * 5 4 3 7 7 C 1.37883 * 120.00066 * 184.09764 * 5 4 3 8 8 N 1.31509 * 119.99816 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00115 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47095 * 90.00527 * 9 7 5 11 11 H 1.48495 * 109.47497 * 210.00166 * 9 7 5 12 12 H 1.48495 * 109.47217 * 330.00617 * 9 7 5 13 13 S 1.65596 * 120.00082 * 94.99361 * 3 2 1 14 14 O 1.42092 * 106.40414 * 330.08212 * 13 3 2 15 15 O 1.42097 * 106.40232 * 197.15938 * 13 3 2 16 16 N 1.65606 * 107.21672 * 83.62103 * 13 3 2 17 17 C 1.46499 * 119.99848 * 65.48933 * 16 13 3 18 18 C 1.53000 * 109.47139 * 165.72142 * 17 16 13 19 19 H 1.08996 * 109.46785 * 64.99853 * 18 17 16 20 20 C 1.52998 * 109.47182 * 185.00051 * 18 17 16 21 21 N 1.46906 * 109.47056 * 304.99760 * 18 17 16 22 22 C 1.46841 * 110.99659 * 180.02562 * 21 18 17 23 23 C 1.53046 * 109.51238 * 185.84824 * 22 21 18 24 24 C 1.53121 * 109.27456 * 300.80175 * 23 22 21 25 25 C 1.53117 * 109.15087 * 57.67057 * 24 23 22 26 26 C 1.46848 * 110.99780 * 304.21003 * 21 18 17 27 27 H 1.09003 * 109.46575 * 59.99890 * 1 2 3 28 28 H 1.08990 * 109.47370 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47242 * 300.00788 * 1 2 3 30 30 H 1.08997 * 109.47189 * 239.99673 * 2 1 3 31 31 H 1.09003 * 109.46575 * 120.00110 * 2 1 3 32 32 H 1.08994 * 109.47590 * 40.14578 * 4 3 2 33 33 H 1.09008 * 109.47131 * 160.14536 * 4 3 2 34 34 H 0.96999 * 120.00108 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00222 * 245.48659 * 16 13 3 36 36 H 1.09001 * 109.47351 * 45.71738 * 17 16 13 37 37 H 1.09002 * 109.47306 * 285.71907 * 17 16 13 38 38 H 1.09001 * 109.47046 * 180.02562 * 20 18 17 39 39 H 1.09007 * 109.47163 * 299.99524 * 20 18 17 40 40 H 1.08997 * 109.47404 * 59.99635 * 20 18 17 41 41 H 1.09003 * 109.46403 * 305.85525 * 22 21 18 42 42 H 1.08998 * 109.46812 * 65.83232 * 22 21 18 43 43 H 1.08991 * 109.50391 * 60.75547 * 23 22 21 44 44 H 1.08997 * 109.50208 * 180.87536 * 23 22 21 45 45 H 1.08998 * 109.53094 * 297.76381 * 24 23 22 46 46 H 1.08997 * 109.57218 * 177.60144 * 24 23 22 47 47 H 1.08998 * 109.49965 * 182.39801 * 25 24 23 48 48 H 1.08996 * 109.53744 * 62.29693 * 25 24 23 49 49 H 1.09001 * 109.45853 * 294.17572 * 26 21 18 50 50 H 1.09001 * 109.45980 * 54.15635 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1584 2.1085 -1.2639 5 6 3.4374 1.6928 -1.9438 6 1 4.0483 0.9126 -1.5143 7 6 3.8277 2.3083 -3.1142 8 7 3.0840 3.2586 -3.6370 9 14 5.4128 1.7925 -3.9573 10 1 5.1280 0.6979 -4.9196 11 1 5.9874 2.9531 -4.6838 12 1 6.3828 1.3163 -2.9388 13 16 2.4122 2.1202 1.4286 14 8 1.5764 1.5433 2.4225 15 8 2.4525 3.5151 1.1610 16 7 3.9617 1.6707 1.8022 17 6 5.0732 2.0925 0.9462 18 6 6.3966 1.8638 1.6792 19 1 6.5441 0.7956 1.8379 20 6 7.5480 2.4182 0.8379 21 7 6.3629 2.5517 2.9768 22 6 7.6199 2.3543 3.7098 23 6 7.4953 2.9585 5.1104 24 6 7.1822 4.4526 4.9903 25 6 5.8947 4.6325 4.1814 26 6 6.0660 3.9799 2.8077 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5140 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.3118 1.8791 -1.9109 33 1 2.1841 3.1801 -1.0656 34 1 3.3586 3.6919 -4.4602 35 1 4.1333 1.1283 2.5878 36 1 4.9676 3.1511 0.7087 37 1 5.0632 1.5107 0.0246 38 1 8.4909 2.2549 1.3599 39 1 7.5731 1.9078 -0.1250 40 1 7.4005 3.4864 0.6791 41 1 7.8289 1.2876 3.7917 42 1 8.4334 2.8436 3.1742 43 1 6.6909 2.4603 5.6514 44 1 8.4336 2.8257 5.6488 45 1 8.0045 4.9576 4.4834 46 1 7.0503 4.8791 5.9846 47 1 5.6893 5.6956 4.0560 48 1 5.0647 4.1611 4.7076 49 1 6.8871 4.4611 2.2764 50 1 5.1459 4.0941 2.2345 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800013694.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:51 Heat of formation + Delta-G solvation = -108.776685 kcal Electronic energy + Delta-G solvation = -29575.998828 eV Core-core repulsion = 25763.416708 eV Total energy + Delta-G solvation = -3812.582121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.51110 -38.24933 -37.65340 -36.84605 -36.81703 -34.64621 -34.20213 -31.70729 -31.48407 -30.68535 -28.47388 -26.80674 -25.19482 -24.91760 -23.85598 -23.23821 -21.72450 -20.22393 -20.06928 -18.61972 -18.54638 -18.19038 -17.46885 -17.17378 -16.60176 -16.21047 -15.74911 -15.52439 -15.38409 -15.06787 -14.81905 -14.73818 -14.63782 -14.31641 -13.95678 -13.74739 -13.65990 -13.55196 -13.43214 -13.28113 -13.10632 -12.96275 -12.93207 -12.89206 -12.68545 -12.64587 -12.41024 -12.25314 -12.18223 -12.04481 -11.72917 -11.60225 -11.56885 -11.54477 -11.19073 -11.09723 -10.54573 -10.25498 -9.74175 -9.16041 -8.12283 -6.25380 -0.20587 1.45583 1.46280 1.55885 2.09862 2.45631 2.67242 2.99398 3.20253 3.52082 3.79708 3.90900 3.98570 4.03553 4.07929 4.19457 4.36009 4.38307 4.44959 4.46195 4.49657 4.58733 4.63739 4.70251 4.72429 4.76088 4.84375 4.89815 4.97598 5.01649 5.02698 5.10714 5.13131 5.15051 5.19386 5.25537 5.31424 5.32404 5.37306 5.44407 5.52395 5.57344 5.81870 5.96804 6.15456 6.17312 6.27646 6.39446 6.86662 7.44239 8.96156 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010853 B = 0.005153 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2579.283297 B = 5432.676793 C = 7070.452573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.997 5.997 4 C 0.259 3.741 5 C -0.532 4.532 6 H 0.079 0.921 7 C 0.012 3.988 8 N -0.931 5.931 9 Si 0.953 3.047 10 H -0.277 1.277 11 H -0.292 1.292 12 H -0.250 1.250 13 S 2.798 3.202 14 O -1.010 7.010 15 O -1.020 7.020 16 N -1.099 6.099 17 C 0.128 3.872 18 C 0.082 3.918 19 H 0.108 0.892 20 C -0.183 4.183 21 N -0.530 5.530 22 C 0.051 3.949 23 C -0.113 4.113 24 C -0.116 4.116 25 C -0.118 4.118 26 C 0.045 3.955 27 H 0.045 0.955 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.014 0.986 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.424 0.576 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.085 0.915 42 H 0.038 0.962 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.072 0.928 47 H 0.064 0.936 48 H 0.059 0.941 49 H 0.035 0.965 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 -5.308 14.063 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.838 5.838 4 C 0.135 3.865 5 C -0.571 4.571 6 H 0.097 0.903 7 C -0.188 4.188 8 N -0.571 5.571 9 Si 0.778 3.222 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.174 1.174 13 S 2.806 3.194 14 O -0.994 6.994 15 O -1.004 7.004 16 N -0.862 5.862 17 C 0.002 3.998 18 C -0.028 4.028 19 H 0.126 0.874 20 C -0.242 4.242 21 N -0.255 5.255 22 C -0.076 4.076 23 C -0.151 4.151 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.083 4.083 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.065 0.935 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.032 0.968 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.104 0.896 42 H 0.056 0.944 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.091 0.909 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.380 -4.701 14.554 17.942 hybrid contribution 1.133 0.293 -1.494 1.897 sum 10.513 -4.408 13.061 17.336 Atomic orbital electron populations 1.22202 0.96194 1.03150 1.01239 1.21224 0.94453 0.81312 1.03271 1.57645 1.79452 1.24052 1.22644 1.18732 0.96534 0.91018 0.80216 1.21802 1.07230 1.20267 1.07851 0.90326 1.25796 1.00260 0.94747 0.97965 1.70082 1.40081 1.25890 1.20999 0.85630 0.80023 0.77507 0.79069 1.20228 1.21832 1.17376 1.01128 0.73291 0.72832 0.72123 1.93518 1.66590 1.79662 1.59634 1.93515 1.87381 1.33789 1.85695 1.55284 1.22898 1.69857 1.38196 1.21437 0.85783 0.99588 0.93028 1.21902 0.92520 1.00151 0.88224 0.87438 1.22384 0.99254 1.01413 1.01184 1.62144 1.34340 1.11057 1.17911 1.22204 0.89495 1.01520 0.94397 1.21577 1.02346 0.95113 0.96017 1.21554 0.96591 0.97051 1.00164 1.21590 0.98980 0.99863 0.95183 1.22148 1.00033 0.88469 0.97680 0.93543 0.89085 0.93517 0.89947 0.89682 0.96824 0.96311 0.92797 0.74012 0.93185 0.90536 0.90156 0.91837 0.93298 0.89625 0.94363 0.91707 0.89884 0.92110 0.90944 0.91687 0.92232 0.94649 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 10.24 71.98 0.74 -4.53 16 2 C 0.12 4.11 6.02 86.38 0.52 4.63 16 3 N -1.00 -40.94 2.84 -519.85 -1.48 -42.42 16 4 C 0.26 13.00 5.46 85.63 0.47 13.47 16 5 C -0.53 -26.73 8.50 25.60 0.22 -26.51 16 6 H 0.08 3.64 6.47 -2.91 -0.02 3.62 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.93 -53.62 13.29 21.45 0.28 -53.34 16 9 Si 0.95 40.55 29.54 68.60 2.03 42.58 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.85 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 13 S 2.80 112.53 6.07 -56.49 -0.34 112.18 16 14 O -1.01 -41.48 17.17 -128.00 -2.20 -43.67 16 15 O -1.02 -49.59 16.01 -128.00 -2.05 -51.64 16 16 N -1.10 -35.08 5.81 -187.49 -1.09 -36.17 16 17 C 0.13 4.15 5.05 86.38 0.44 4.59 16 18 C 0.08 1.99 2.55 44.91 0.11 2.10 16 19 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 20 C -0.18 -4.22 8.50 71.98 0.61 -3.60 16 21 N -0.53 -12.34 4.33 -871.09 -3.77 -16.11 16 22 C 0.05 0.91 4.89 86.33 0.42 1.33 16 23 C -0.11 -1.80 6.09 30.65 0.19 -1.61 16 24 C -0.12 -2.03 6.00 30.67 0.18 -1.84 16 25 C -0.12 -2.73 6.09 30.65 0.19 -2.55 16 26 C 0.04 1.20 4.67 86.33 0.40 1.60 16 27 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 1.54 7.96 -2.39 -0.02 1.52 16 30 H 0.08 2.71 8.09 -2.39 -0.02 2.70 16 31 H 0.08 2.42 7.79 -2.39 -0.02 2.40 16 32 H 0.01 0.73 8.10 -2.39 -0.02 0.71 16 33 H 0.02 1.08 6.77 -2.38 -0.02 1.07 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.42 11.33 8.56 -96.74 -0.83 10.50 16 36 H 0.05 1.91 6.13 -2.39 -0.01 1.89 16 37 H 0.08 2.67 5.86 -2.39 -0.01 2.66 16 38 H 0.08 1.48 6.54 -2.39 -0.02 1.47 16 39 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.05 1.25 6.63 -2.39 -0.02 1.23 16 41 H 0.09 1.30 8.12 -2.39 -0.02 1.28 16 42 H 0.04 0.67 6.63 -2.39 -0.02 0.65 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 48 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 49 H 0.04 0.92 6.71 -2.39 -0.02 0.91 16 50 H 0.06 1.86 6.01 -2.39 -0.01 1.85 16 Total: -1.00 -66.03 391.97 -3.58 -69.61 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.09 Total: 30.84 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: 4.95 Total: -11.85 kcal Atomic # 7 Polarization: -141.99 SS G_CDS: -6.05 Total: -148.04 kcal Atomic # 8 Polarization: -91.07 SS G_CDS: -4.25 Total: -95.32 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.03 Total: 42.58 kcal Atomic # 16 Polarization: 112.53 SS G_CDS: -0.34 Total: 112.18 kcal Total: -66.03 -3.58 -69.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800013694.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.172 kcal (2) G-P(sol) polarization free energy of solvation -66.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds