Wall clock time and date at job start Tue Mar 31 2020 17:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47565 * 2 1 4 4 C 1.46501 * 120.00059 * 275.00217 * 3 2 1 5 5 C 1.50708 * 109.46874 * 280.74491 * 4 3 2 6 6 H 1.08004 * 119.99502 * 4.75049 * 5 4 3 7 7 C 1.37872 * 120.00079 * 184.74970 * 5 4 3 8 8 N 1.31515 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99947 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47024 * 60.00400 * 9 7 5 11 11 H 1.48501 * 109.46718 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47111 * 300.00148 * 9 7 5 13 13 S 1.65600 * 120.00004 * 94.99785 * 3 2 1 14 14 O 1.42097 * 106.40247 * 337.93752 * 13 3 2 15 15 O 1.42105 * 106.40471 * 205.01694 * 13 3 2 16 16 N 1.65603 * 107.21798 * 91.47775 * 13 3 2 17 17 C 1.46495 * 119.99881 * 66.56892 * 16 13 3 18 18 C 1.53001 * 109.47217 * 162.92932 * 17 16 13 19 19 H 1.09002 * 109.47596 * 185.99005 * 18 17 16 20 20 C 1.53001 * 109.47126 * 65.98763 * 18 17 16 21 21 N 1.46903 * 109.46737 * 305.99129 * 18 17 16 22 22 C 1.46846 * 110.99804 * 306.38092 * 21 18 17 23 23 C 1.53039 * 109.52032 * 174.16252 * 22 21 18 24 24 C 1.53126 * 109.27837 * 59.18426 * 23 22 21 25 25 C 1.53123 * 109.15587 * 302.34083 * 24 23 22 26 26 C 1.46848 * 110.99452 * 182.17527 * 21 18 17 27 27 H 1.08991 * 109.47643 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47190 * 300.00717 * 1 2 3 29 29 H 1.09003 * 109.46790 * 59.99959 * 1 2 3 30 30 H 1.09007 * 109.46765 * 239.99556 * 2 1 3 31 31 H 1.09003 * 109.46790 * 120.00041 * 2 1 3 32 32 H 1.09000 * 109.47270 * 40.74342 * 4 3 2 33 33 H 1.08994 * 109.47280 * 160.75095 * 4 3 2 34 34 H 0.97003 * 119.99800 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99405 * 246.56505 * 16 13 3 36 36 H 1.09000 * 109.47726 * 42.92396 * 17 16 13 37 37 H 1.09006 * 109.46951 * 282.92770 * 17 16 13 38 38 H 1.08999 * 109.47394 * 60.00277 * 20 18 17 39 39 H 1.09001 * 109.47258 * 180.02562 * 20 18 17 40 40 H 1.09003 * 109.47293 * 300.00048 * 20 18 17 41 41 H 1.08996 * 109.46555 * 294.17525 * 22 21 18 42 42 H 1.08996 * 109.45816 * 54.15241 * 22 21 18 43 43 H 1.08998 * 109.50524 * 299.24255 * 23 22 21 44 44 H 1.09004 * 109.50054 * 179.12200 * 23 22 21 45 45 H 1.09001 * 109.52159 * 182.44260 * 24 23 22 46 46 H 1.08994 * 109.57619 * 62.27847 * 24 23 22 47 47 H 1.09000 * 109.50856 * 297.71388 * 25 24 23 48 48 H 1.08995 * 109.53041 * 177.61515 * 25 24 23 49 49 H 1.08997 * 109.46854 * 305.84827 * 26 21 18 50 50 H 1.08997 * 109.46404 * 65.83750 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4301 1.6819 -1.9509 6 1 4.0307 0.8886 -1.5309 7 6 3.8267 2.3043 -3.1155 8 7 3.0956 3.2707 -3.6265 9 14 5.4034 1.7759 -3.9666 10 1 5.3072 0.3421 -4.3410 11 1 5.6043 2.5948 -5.1890 12 1 6.5522 1.9712 -3.0462 13 16 2.4123 2.1201 1.4287 14 8 1.7139 1.4194 2.4487 15 8 2.2723 3.5172 1.2098 16 7 4.0241 1.8475 1.6935 17 6 5.0236 2.4425 0.8030 18 6 6.3953 2.4069 1.4797 19 1 7.1180 2.9435 0.8649 20 6 6.8452 0.9538 1.6444 21 7 6.3066 3.0447 2.8001 22 6 5.7334 4.3927 2.6959 23 6 5.5214 4.9680 4.0981 24 6 6.8645 5.0195 4.8318 25 6 7.4628 3.6110 4.8841 26 6 7.6186 3.0750 3.4590 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3063 1.8874 -1.9067 33 1 2.1949 3.1795 -1.0646 34 1 3.3745 3.7083 -4.4460 35 1 4.3063 1.2939 2.4383 36 1 4.7506 3.4759 0.5892 37 1 5.0630 1.8772 -0.1282 38 1 6.9110 0.4806 0.6648 39 1 7.8223 0.9284 2.1270 40 1 6.1226 0.4172 2.2594 41 1 6.4153 5.0352 2.1390 42 1 4.7768 4.3413 2.1760 43 1 4.8289 4.3334 4.6510 44 1 5.1105 5.9746 4.0201 45 1 6.7115 5.3881 5.8461 46 1 7.5452 5.6850 4.3011 47 1 6.8008 2.9550 5.4493 48 1 8.4389 3.6475 5.3678 49 1 8.0312 2.0667 3.4934 50 1 8.2915 3.7239 2.8986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800013695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:55 Heat of formation + Delta-G solvation = -86.892989 kcal Electronic energy + Delta-G solvation = -29661.116594 eV Core-core repulsion = 25849.483421 eV Total energy + Delta-G solvation = -3811.633172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.36009 -36.57336 -36.04454 -35.78936 -35.09498 -32.85182 -32.67467 -30.90978 -29.89029 -29.66565 -26.65029 -25.93567 -23.97106 -23.14161 -22.62146 -21.63237 -20.24185 -19.63289 -18.67757 -17.10434 -16.74769 -16.65638 -16.30258 -15.45053 -14.99904 -14.76709 -14.56700 -14.36362 -14.05981 -13.77947 -13.62477 -13.36169 -13.31054 -13.19604 -12.84820 -12.76847 -12.04791 -12.00690 -11.83228 -11.67001 -11.63258 -11.56762 -11.38748 -11.26986 -11.21993 -11.15901 -11.05178 -10.97209 -10.89498 -10.66191 -10.49860 -10.36739 -10.24603 -10.08305 -9.96671 -9.78237 -8.77692 -8.52651 -8.19399 -8.01324 -6.13573 -4.20075 1.43029 3.21420 3.28509 3.29024 3.67173 3.93522 4.31093 4.32520 4.77529 4.82324 4.90415 5.04213 5.17603 5.18316 5.19864 5.30372 5.45952 5.49044 5.51067 5.52168 5.61525 5.69281 5.80305 5.81042 5.85107 5.88527 5.95413 5.97565 6.00446 6.12185 6.12913 6.14812 6.22312 6.26026 6.35655 6.38420 6.48644 6.56797 6.71041 6.76669 7.23561 7.24758 7.36715 7.42709 7.58537 7.75860 7.85709 8.14974 8.84435 9.45036 10.94024 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.005168 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.844261 B = 5416.609657 C = 6854.430056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.132 3.868 3 N -0.994 5.994 4 C 0.244 3.756 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.786 3.214 14 O -1.004 7.004 15 O -0.985 6.985 16 N -1.115 6.115 17 C 0.123 3.877 18 C 0.073 3.927 19 H 0.050 0.950 20 C -0.143 4.143 21 N -0.528 5.528 22 C 0.046 3.954 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.115 4.115 26 C 0.052 3.948 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.032 0.968 33 H 0.054 0.946 34 H 0.265 0.735 35 H 0.410 0.590 36 H 0.076 0.924 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.064 0.936 41 H 0.030 0.970 42 H 0.091 0.909 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.061 0.939 49 H 0.076 0.924 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.494 -2.344 12.245 14.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.122 3.878 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.138 4.138 8 N -0.525 5.525 9 Si 0.717 3.283 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.201 1.201 13 S 2.794 3.206 14 O -0.988 6.988 15 O -0.968 6.968 16 N -0.876 5.876 17 C -0.003 4.003 18 C -0.036 4.036 19 H 0.068 0.932 20 C -0.201 4.201 21 N -0.253 5.253 22 C -0.082 4.082 23 C -0.154 4.154 24 C -0.158 4.158 25 C -0.153 4.153 26 C -0.076 4.076 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.244 0.756 36 H 0.094 0.906 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.094 0.906 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 6.520 -1.851 12.753 14.442 hybrid contribution 1.874 -0.165 -1.147 2.204 sum 8.394 -2.016 11.606 14.465 Atomic orbital electron populations 1.22202 0.97142 1.01285 1.02272 1.20936 0.93498 0.83015 1.02050 1.57747 1.78761 1.22865 1.24155 1.19173 0.97111 0.92399 0.79135 1.21491 1.07944 1.19678 1.08606 0.91800 1.24950 0.97009 0.94782 0.97041 1.69927 1.38201 1.23416 1.20929 0.86705 0.83708 0.78679 0.79192 1.20207 1.21269 1.20058 1.01646 0.72774 0.73647 0.72522 1.93533 1.71926 1.75451 1.57865 1.93558 1.85798 1.31529 1.85929 1.55674 1.24877 1.66305 1.40704 1.21527 0.86258 0.99645 0.92902 1.21873 0.96916 0.95661 0.89158 0.93238 1.21854 1.00767 0.95198 1.02247 1.61923 1.23179 1.19864 1.20362 1.22234 1.00776 0.88157 0.97024 1.21580 0.97235 1.00712 0.95921 1.21583 0.97178 0.96863 1.00198 1.21569 1.00542 0.96743 0.96441 1.22141 0.90116 1.00634 0.94742 0.92439 0.92781 0.92140 0.90268 0.91934 0.94991 0.92826 0.92528 0.75581 0.90589 0.88669 0.91739 0.92896 0.91697 0.95149 0.89055 0.91147 0.91636 0.92184 0.92547 0.91156 0.92073 0.90575 0.95359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.73 10.24 37.16 0.38 -2.35 16 2 C 0.13 2.29 6.03 -4.05 -0.02 2.27 16 3 N -0.99 -20.11 2.84 -115.66 -0.33 -20.44 16 4 C 0.24 5.85 5.48 -5.19 -0.03 5.82 16 5 C -0.54 -13.21 7.81 -34.44 -0.27 -13.48 16 6 H 0.06 1.50 6.94 -52.48 -0.36 1.13 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -24.52 13.29 55.43 0.74 -23.78 16 9 Si 0.89 19.74 29.54 -169.99 -5.02 14.72 16 10 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 13 S 2.79 55.01 6.12 -107.50 -0.66 54.36 16 14 O -1.00 -20.73 17.06 -57.17 -0.98 -21.71 16 15 O -0.98 -22.56 16.08 -57.17 -0.92 -23.48 16 16 N -1.12 -18.27 5.57 -10.61 -0.06 -18.33 16 17 C 0.12 2.06 5.01 -4.04 -0.02 2.04 16 18 C 0.07 1.00 2.36 -67.71 -0.16 0.84 16 19 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 20 C -0.14 -1.69 8.91 37.16 0.33 -1.36 16 21 N -0.53 -6.83 4.17 -226.69 -0.94 -7.78 16 22 C 0.05 0.64 5.08 -3.83 -0.02 0.62 16 23 C -0.12 -1.42 6.09 -26.65 -0.16 -1.58 16 24 C -0.12 -1.22 6.00 -26.60 -0.16 -1.38 16 25 C -0.12 -1.13 6.09 -26.64 -0.16 -1.29 16 26 C 0.05 0.56 5.25 -3.83 -0.02 0.54 16 27 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.06 1.01 8.10 -51.93 -0.42 0.59 16 30 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 31 H 0.06 0.98 7.57 -51.93 -0.39 0.59 16 32 H 0.03 0.81 8.10 -51.93 -0.42 0.39 16 33 H 0.05 1.43 6.86 -51.93 -0.36 1.07 16 34 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.41 5.94 7.37 -34.47 -0.25 5.69 16 36 H 0.08 1.41 6.10 -51.93 -0.32 1.10 16 37 H 0.10 1.74 5.67 -51.93 -0.29 1.45 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.54 6.33 -51.93 -0.33 0.21 16 40 H 0.06 0.75 6.93 -51.93 -0.36 0.39 16 41 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.09 1.50 5.92 -51.93 -0.31 1.19 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 48 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.76 6.07 -51.93 -0.32 0.45 16 50 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -29.41 391.83 -11.43 -40.85 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -8.76 Total: 7.39 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -0.41 Total: -7.71 kcal Atomic # 7 Polarization: -69.73 SS G_CDS: -0.60 Total: -70.32 kcal Atomic # 8 Polarization: -43.29 SS G_CDS: -1.89 Total: -45.19 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.72 kcal Atomic # 16 Polarization: 55.01 SS G_CDS: -0.66 Total: 54.36 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -29.41 -11.43 -40.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800013695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.047 kcal (2) G-P(sol) polarization free energy of solvation -29.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds