Wall clock time and date at job start Tue Mar 31 2020 17:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47565 * 2 1 4 4 C 1.46501 * 120.00059 * 275.00217 * 3 2 1 5 5 C 1.50708 * 109.46874 * 280.74491 * 4 3 2 6 6 H 1.08004 * 119.99502 * 4.75049 * 5 4 3 7 7 C 1.37872 * 120.00079 * 184.74970 * 5 4 3 8 8 N 1.31515 * 119.99924 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99947 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47024 * 60.00400 * 9 7 5 11 11 H 1.48501 * 109.46718 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47111 * 300.00148 * 9 7 5 13 13 S 1.65600 * 120.00004 * 94.99785 * 3 2 1 14 14 O 1.42097 * 106.40247 * 337.93752 * 13 3 2 15 15 O 1.42105 * 106.40471 * 205.01694 * 13 3 2 16 16 N 1.65603 * 107.21798 * 91.47775 * 13 3 2 17 17 C 1.46495 * 119.99881 * 66.56892 * 16 13 3 18 18 C 1.53001 * 109.47217 * 162.92932 * 17 16 13 19 19 H 1.09002 * 109.47596 * 185.99005 * 18 17 16 20 20 C 1.53001 * 109.47126 * 65.98763 * 18 17 16 21 21 N 1.46903 * 109.46737 * 305.99129 * 18 17 16 22 22 C 1.46846 * 110.99804 * 306.38092 * 21 18 17 23 23 C 1.53039 * 109.52032 * 174.16252 * 22 21 18 24 24 C 1.53126 * 109.27837 * 59.18426 * 23 22 21 25 25 C 1.53123 * 109.15587 * 302.34083 * 24 23 22 26 26 C 1.46848 * 110.99452 * 182.17527 * 21 18 17 27 27 H 1.08991 * 109.47643 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47190 * 300.00717 * 1 2 3 29 29 H 1.09003 * 109.46790 * 59.99959 * 1 2 3 30 30 H 1.09007 * 109.46765 * 239.99556 * 2 1 3 31 31 H 1.09003 * 109.46790 * 120.00041 * 2 1 3 32 32 H 1.09000 * 109.47270 * 40.74342 * 4 3 2 33 33 H 1.08994 * 109.47280 * 160.75095 * 4 3 2 34 34 H 0.97003 * 119.99800 * 180.02562 * 8 7 5 35 35 H 0.96995 * 119.99405 * 246.56505 * 16 13 3 36 36 H 1.09000 * 109.47726 * 42.92396 * 17 16 13 37 37 H 1.09006 * 109.46951 * 282.92770 * 17 16 13 38 38 H 1.08999 * 109.47394 * 60.00277 * 20 18 17 39 39 H 1.09001 * 109.47258 * 180.02562 * 20 18 17 40 40 H 1.09003 * 109.47293 * 300.00048 * 20 18 17 41 41 H 1.08996 * 109.46555 * 294.17525 * 22 21 18 42 42 H 1.08996 * 109.45816 * 54.15241 * 22 21 18 43 43 H 1.08998 * 109.50524 * 299.24255 * 23 22 21 44 44 H 1.09004 * 109.50054 * 179.12200 * 23 22 21 45 45 H 1.09001 * 109.52159 * 182.44260 * 24 23 22 46 46 H 1.08994 * 109.57619 * 62.27847 * 24 23 22 47 47 H 1.09000 * 109.50856 * 297.71388 * 25 24 23 48 48 H 1.08995 * 109.53041 * 177.61515 * 25 24 23 49 49 H 1.08997 * 109.46854 * 305.84827 * 26 21 18 50 50 H 1.08997 * 109.46404 * 65.83750 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.4301 1.6819 -1.9509 6 1 4.0307 0.8886 -1.5309 7 6 3.8267 2.3043 -3.1155 8 7 3.0956 3.2707 -3.6265 9 14 5.4034 1.7759 -3.9666 10 1 5.3072 0.3421 -4.3410 11 1 5.6043 2.5948 -5.1890 12 1 6.5522 1.9712 -3.0462 13 16 2.4123 2.1201 1.4287 14 8 1.7139 1.4194 2.4487 15 8 2.2723 3.5172 1.2098 16 7 4.0241 1.8475 1.6935 17 6 5.0236 2.4425 0.8030 18 6 6.3953 2.4069 1.4797 19 1 7.1180 2.9435 0.8649 20 6 6.8452 0.9538 1.6444 21 7 6.3066 3.0447 2.8001 22 6 5.7334 4.3927 2.6959 23 6 5.5214 4.9680 4.0981 24 6 6.8645 5.0195 4.8318 25 6 7.4628 3.6110 4.8841 26 6 7.6186 3.0750 3.4590 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.3063 1.8874 -1.9067 33 1 2.1949 3.1795 -1.0646 34 1 3.3745 3.7083 -4.4460 35 1 4.3063 1.2939 2.4383 36 1 4.7506 3.4759 0.5892 37 1 5.0630 1.8772 -0.1282 38 1 6.9110 0.4806 0.6648 39 1 7.8223 0.9284 2.1270 40 1 6.1226 0.4172 2.2594 41 1 6.4153 5.0352 2.1390 42 1 4.7768 4.3413 2.1760 43 1 4.8289 4.3334 4.6510 44 1 5.1105 5.9746 4.0201 45 1 6.7115 5.3881 5.8461 46 1 7.5452 5.6850 4.3011 47 1 6.8008 2.9550 5.4493 48 1 8.4389 3.6475 5.3678 49 1 8.0312 2.0667 3.4934 50 1 8.2915 3.7239 2.8986 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800013695.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:54 Heat of formation + Delta-G solvation = -107.342117 kcal Electronic energy + Delta-G solvation = -29662.003335 eV Core-core repulsion = 25849.483421 eV Total energy + Delta-G solvation = -3812.519913 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39123 -38.25990 -37.66078 -36.98911 -36.82257 -34.65013 -33.97881 -31.84830 -31.48431 -30.69481 -28.48232 -27.14190 -24.96491 -24.91544 -23.58344 -23.22590 -21.31234 -20.69319 -20.17565 -18.70625 -18.52721 -18.24512 -17.64925 -17.05511 -16.46945 -16.11285 -15.74474 -15.61205 -15.28412 -15.05776 -14.80017 -14.69753 -14.57773 -14.36887 -14.21831 -13.87414 -13.74775 -13.59951 -13.33446 -13.14627 -13.05234 -12.98253 -12.80110 -12.70420 -12.65542 -12.58352 -12.35543 -12.21878 -12.10082 -12.06982 -11.97008 -11.71213 -11.56807 -11.55299 -11.14585 -11.03339 -10.53085 -10.23819 -9.73947 -9.22936 -8.12050 -6.25002 -0.20080 1.46850 1.47803 1.55044 2.10414 2.45967 2.66774 2.94578 3.20142 3.51073 3.78010 3.91845 3.95462 4.03667 4.11315 4.14685 4.35553 4.40727 4.46157 4.47478 4.50047 4.58851 4.66422 4.70854 4.74763 4.82234 4.90932 4.92865 4.95656 5.01521 5.07233 5.08641 5.13189 5.17175 5.18961 5.23940 5.30581 5.33582 5.42323 5.44268 5.51121 5.57175 5.81339 5.95800 6.14984 6.16565 6.26208 6.39675 6.86651 7.44361 8.95934 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.005168 C = 0.004084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.844261 B = 5416.609657 C = 6854.430056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.997 5.997 4 C 0.260 3.740 5 C -0.532 4.532 6 H 0.078 0.922 7 C 0.014 3.986 8 N -0.930 5.930 9 Si 0.952 3.048 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.260 1.260 13 S 2.798 3.202 14 O -1.009 7.009 15 O -1.021 7.021 16 N -1.096 6.096 17 C 0.128 3.872 18 C 0.077 3.923 19 H 0.049 0.951 20 C -0.138 4.138 21 N -0.530 5.530 22 C 0.045 3.955 23 C -0.117 4.117 24 C -0.117 4.117 25 C -0.112 4.112 26 C 0.049 3.951 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.013 0.987 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.422 0.578 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.845 -4.283 13.666 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.838 5.838 4 C 0.136 3.864 5 C -0.571 4.571 6 H 0.096 0.904 7 C -0.186 4.186 8 N -0.569 5.569 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.220 1.220 12 H -0.184 1.184 13 S 2.806 3.194 14 O -0.993 6.993 15 O -1.004 7.004 16 N -0.860 5.860 17 C 0.001 3.999 18 C -0.033 4.033 19 H 0.067 0.933 20 C -0.196 4.196 21 N -0.255 5.255 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.078 4.078 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.031 0.969 33 H 0.037 0.963 34 H 0.072 0.928 35 H 0.259 0.741 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.093 0.907 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.869 -3.828 14.213 17.185 hybrid contribution 1.090 0.445 -1.536 1.936 sum 9.960 -3.383 12.677 16.473 Atomic orbital electron populations 1.22196 0.96192 1.03190 1.01156 1.21225 0.94441 0.81392 1.03280 1.57652 1.79424 1.23985 1.22718 1.18723 0.96501 0.90911 0.80251 1.21736 1.07775 1.19353 1.08212 0.90414 1.25770 1.00134 0.94750 0.97922 1.70078 1.40279 1.25056 1.21514 0.85692 0.80256 0.78380 0.77934 1.19222 1.21975 1.18396 1.01112 0.73369 0.72724 0.72151 1.93515 1.72661 1.75310 1.57856 1.93515 1.86575 1.33987 1.86336 1.55273 1.23515 1.66231 1.41003 1.21422 0.88011 0.97694 0.92809 1.21826 0.94595 0.97388 0.89451 0.93278 1.21830 1.01932 0.93255 1.02554 1.61949 1.24760 1.19014 1.19811 1.22162 0.99219 0.89074 0.97852 1.21582 0.98612 1.00366 0.94918 1.21564 0.95709 0.97517 1.00622 1.21572 1.01624 0.96058 0.95688 1.22266 0.88720 1.01688 0.95114 0.89041 0.93702 0.93436 0.89926 0.89693 0.96935 0.96305 0.92764 0.74091 0.93303 0.90084 0.91824 0.90734 0.91410 0.95397 0.92309 0.92018 0.91604 0.90747 0.92251 0.91484 0.89837 0.89051 0.95330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.26 10.24 71.98 0.74 -4.52 16 2 C 0.12 4.12 6.03 86.38 0.52 4.64 16 3 N -1.00 -40.82 2.84 -519.84 -1.48 -42.30 16 4 C 0.26 12.91 5.48 85.64 0.47 13.38 16 5 C -0.53 -26.34 7.81 25.60 0.20 -26.14 16 6 H 0.08 3.57 6.94 -2.91 -0.02 3.55 16 7 C 0.01 0.71 5.46 84.65 0.46 1.17 16 8 N -0.93 -52.94 13.29 21.45 0.28 -52.65 16 9 Si 0.95 40.21 29.54 68.60 2.03 42.24 16 10 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 11 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 12 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 13 S 2.80 112.25 6.12 -56.49 -0.35 111.91 16 14 O -1.01 -41.18 17.06 -128.00 -2.18 -43.37 16 15 O -1.02 -49.02 16.08 -128.00 -2.06 -51.08 16 16 N -1.10 -35.71 5.57 -187.49 -1.04 -36.75 16 17 C 0.13 4.28 5.01 86.38 0.43 4.72 16 18 C 0.08 2.02 2.36 44.92 0.11 2.12 16 19 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 20 C -0.14 -2.88 8.91 71.98 0.64 -2.23 16 21 N -0.53 -13.04 4.17 -871.10 -3.63 -16.67 16 22 C 0.04 1.27 5.08 86.33 0.44 1.70 16 23 C -0.12 -2.79 6.09 30.65 0.19 -2.60 16 24 C -0.12 -2.12 6.00 30.68 0.18 -1.93 16 25 C -0.11 -1.86 6.09 30.65 0.19 -1.67 16 26 C 0.05 0.94 5.25 86.33 0.45 1.40 16 27 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.05 1.58 8.10 -2.39 -0.02 1.56 16 30 H 0.08 2.74 8.07 -2.38 -0.02 2.72 16 31 H 0.08 2.49 7.57 -2.39 -0.02 2.47 16 32 H 0.01 0.67 8.10 -2.39 -0.02 0.65 16 33 H 0.02 1.07 6.86 -2.39 -0.02 1.05 16 34 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 35 H 0.42 11.68 7.37 -96.75 -0.71 10.97 16 36 H 0.05 1.91 6.10 -2.39 -0.01 1.90 16 37 H 0.08 2.96 5.67 -2.38 -0.01 2.94 16 38 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.07 1.25 6.33 -2.39 -0.02 1.23 16 40 H 0.07 1.37 6.93 -2.39 -0.02 1.35 16 41 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.06 2.03 5.92 -2.39 -0.01 2.02 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.09 1.49 6.07 -2.39 -0.01 1.47 16 50 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -64.60 391.83 -3.21 -67.80 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.20 Total: 30.84 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: 5.02 Total: -9.96 kcal Atomic # 7 Polarization: -142.51 SS G_CDS: -5.87 Total: -148.38 kcal Atomic # 8 Polarization: -90.21 SS G_CDS: -4.24 Total: -94.45 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 2.03 Total: 42.24 kcal Atomic # 16 Polarization: 112.25 SS G_CDS: -0.35 Total: 111.91 kcal Total: -64.60 -3.21 -67.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800013695.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.538 kcal (2) G-P(sol) polarization free energy of solvation -64.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds