Wall clock time and date at job start Tue Mar 31 2020 17:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47019 * 90.00103 * 8 6 4 10 10 H 1.48501 * 109.47000 * 210.00061 * 8 6 4 11 11 H 1.48501 * 109.47230 * 330.00284 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.52991 * 109.47282 * 164.99994 * 18 17 14 20 20 H 1.09002 * 109.47259 * 64.99767 * 19 18 17 21 21 C 1.52999 * 109.47494 * 184.99639 * 19 18 17 22 22 N 1.46905 * 109.47360 * 305.00194 * 19 18 17 23 23 C 1.46845 * 110.99421 * 299.21196 * 22 19 18 24 24 C 1.53038 * 109.52157 * 174.15938 * 23 22 19 25 25 C 1.53122 * 109.27948 * 59.17659 * 24 23 22 26 26 C 1.53118 * 109.16064 * 302.34753 * 25 24 23 27 27 C 1.46839 * 111.00129 * 174.99866 * 22 19 18 28 28 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 31 31 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 33 33 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 34 34 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 35 35 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 36 36 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 37 37 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 38 38 H 1.09002 * 109.46763 * 59.99825 * 21 19 18 39 39 H 1.08997 * 109.47642 * 179.97438 * 21 19 18 40 40 H 1.08996 * 109.47199 * 300.00452 * 21 19 18 41 41 H 1.09008 * 109.46270 * 294.17258 * 23 22 19 42 42 H 1.08996 * 109.46872 * 54.13875 * 23 22 19 43 43 H 1.08991 * 109.50211 * 299.23643 * 24 23 22 44 44 H 1.09001 * 109.53289 * 179.13310 * 24 23 22 45 45 H 1.08994 * 109.52551 * 182.44011 * 25 24 23 46 46 H 1.09000 * 109.57319 * 62.27991 * 25 24 23 47 47 H 1.09002 * 109.50125 * 297.71439 * 26 25 24 48 48 H 1.08998 * 109.53422 * 177.61411 * 26 25 24 49 49 H 1.09000 * 109.46858 * 305.85178 * 27 22 19 50 50 H 1.09004 * 109.46263 * 65.83354 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4870 -0.1397 -5.1121 11 1 3.6306 -1.7563 -3.7122 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6090 0.8070 5.4379 20 1 -0.0774 1.5591 5.0487 21 6 -0.1319 -0.0975 6.4246 22 7 1.7247 1.4713 6.1250 23 6 2.6620 0.4864 6.6798 24 6 3.8804 1.2095 7.2584 25 6 3.4213 2.1776 8.3524 26 6 2.4093 3.1621 7.7599 27 6 1.2336 2.3824 7.1666 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7093 1.1621 -3.4843 32 1 0.7376 -2.1445 1.9991 33 1 1.5295 -2.5968 0.4706 34 1 2.4630 -2.5820 1.9861 35 1 1.9057 1.7748 3.4682 36 1 0.3190 -0.4570 3.7177 37 1 1.7672 -0.8427 4.6780 38 1 0.5544 -0.8496 6.8138 39 1 -0.5178 0.5027 7.2486 40 1 -0.9597 -0.5903 5.9148 41 1 2.1680 -0.0811 7.4685 42 1 2.9839 -0.1933 5.8908 43 1 4.3828 1.7660 6.4674 44 1 4.5692 0.4797 7.6840 45 1 4.2808 2.7262 8.7374 46 1 2.9537 1.6180 9.1625 47 1 2.8887 3.7494 6.9767 48 1 2.0465 3.8274 8.5433 49 1 0.5180 3.0799 6.7312 50 1 0.7464 1.8060 7.9532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800902228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:11 Heat of formation + Delta-G solvation = -80.806677 kcal Electronic energy + Delta-G solvation = -29080.414599 eV Core-core repulsion = 25269.045349 eV Total energy + Delta-G solvation = -3811.369250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.71780 -36.59147 -36.14220 -35.90599 -35.11360 -33.21600 -32.53669 -30.97820 -29.92445 -29.05776 -25.91659 -25.43693 -25.12955 -24.38960 -23.16784 -20.99738 -20.67094 -19.35906 -18.58329 -17.20312 -16.77036 -16.69488 -16.26463 -15.68109 -15.21098 -14.95964 -14.68250 -14.41173 -14.34306 -14.00069 -13.57787 -13.36439 -13.33835 -12.88442 -12.84081 -12.67288 -12.45620 -12.19914 -12.06665 -11.95481 -11.75393 -11.50600 -11.37285 -11.28682 -11.21794 -11.18293 -10.90667 -10.87837 -10.82075 -10.77719 -10.51452 -10.43421 -10.32850 -10.19222 -10.01941 -9.24212 -9.10434 -8.42768 -8.37598 -7.92146 -6.04542 -4.10922 1.33880 3.29937 3.37069 3.41400 3.57963 3.75518 4.25414 4.42888 4.54911 4.61992 4.73710 4.76910 4.94554 5.03394 5.11270 5.17809 5.20497 5.27191 5.33219 5.40977 5.43901 5.46481 5.53770 5.59199 5.67140 5.75395 5.79283 5.81527 5.84119 5.94785 5.99196 6.08421 6.12574 6.20346 6.26145 6.40731 6.69991 6.82614 6.88032 6.98550 7.00975 7.08228 7.35343 7.58466 7.67489 7.83510 8.08822 8.31302 8.91130 9.54595 11.01164 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.003172 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.509669 B = 8824.721801 C = 9044.912502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.991 5.991 13 C 0.096 3.904 14 S 2.781 3.219 15 O -0.977 6.977 16 O -1.001 7.001 17 N -1.120 6.120 18 C 0.131 3.869 19 C 0.075 3.925 20 H 0.091 0.909 21 C -0.186 4.186 22 N -0.526 5.526 23 C 0.047 3.953 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.117 4.117 27 C 0.055 3.945 28 H 0.091 0.909 29 H 0.031 0.969 30 H 0.010 0.990 31 H 0.263 0.737 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.061 0.939 35 H 0.416 0.584 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.034 0.966 42 H 0.085 0.915 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.061 0.939 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.063 0.937 49 H 0.073 0.927 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.912 0.502 21.119 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.833 5.833 13 C -0.050 4.050 14 S 2.790 3.210 15 O -0.960 6.960 16 O -0.984 6.984 17 N -0.879 5.879 18 C 0.003 3.997 19 C -0.035 4.035 20 H 0.109 0.891 21 C -0.246 4.246 22 N -0.250 5.250 23 C -0.081 4.081 24 C -0.156 4.156 25 C -0.158 4.158 26 C -0.155 4.155 27 C -0.073 4.073 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.250 0.750 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.052 0.948 42 H 0.103 0.897 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.081 0.919 49 H 0.091 0.909 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -1.752 0.753 20.613 20.701 hybrid contribution -0.735 -0.567 -0.246 0.961 sum -2.488 0.186 20.367 20.519 Atomic orbital electron populations 1.22101 0.98296 0.99625 1.00507 1.18699 0.91227 0.93020 0.80484 0.92387 1.21352 1.31518 1.12985 0.90137 0.91952 1.24902 0.94998 0.95005 0.98982 1.69857 1.36634 1.22652 1.23733 0.86508 0.79288 0.79280 0.82394 1.20696 1.21134 1.19829 1.57679 1.69954 1.19767 1.35922 1.21301 0.98541 0.82619 1.02581 1.01832 0.73669 0.73075 0.72439 1.93608 1.74470 1.55952 1.72019 1.93505 1.69392 1.60992 1.74508 1.55896 1.62352 1.17618 1.52072 1.21230 0.94978 0.92941 0.90526 1.21918 0.91901 0.95992 0.93685 0.89100 1.22427 1.01318 1.00661 1.00190 1.62053 1.15305 1.19256 1.28389 1.22206 0.93231 0.94124 0.98515 1.21590 0.97180 0.98557 0.98319 1.21572 0.98872 0.97567 0.97768 1.21588 0.96189 0.97719 1.00030 1.22089 0.96810 0.95380 0.93049 0.89043 0.94946 0.97078 0.92734 0.94663 0.89946 0.92005 0.74982 0.91495 0.90961 0.92019 0.92192 0.91511 0.94782 0.89705 0.90939 0.91654 0.92031 0.92585 0.90954 0.91866 0.90866 0.94875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.97 37.16 0.33 -2.97 16 2 C 0.27 6.60 2.62 -69.08 -0.18 6.42 16 3 H 0.06 1.59 6.91 -51.93 -0.36 1.23 16 4 C -0.52 -14.08 7.99 -34.44 -0.28 -14.36 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.29 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.89 11.32 55.43 0.63 -24.27 16 8 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.99 -20.53 3.12 -115.85 -0.36 -20.89 16 13 C 0.10 1.70 9.66 59.85 0.58 2.28 16 14 S 2.78 54.93 6.14 -107.50 -0.66 54.27 16 15 O -0.98 -23.30 16.70 -57.17 -0.95 -24.26 16 16 O -1.00 -20.64 16.21 -57.17 -0.93 -21.57 16 17 N -1.12 -16.76 5.80 -10.61 -0.06 -16.82 16 18 C 0.13 1.59 5.26 -4.04 -0.02 1.57 16 19 C 0.07 0.74 2.48 -67.72 -0.17 0.58 16 20 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 21 C -0.19 -1.53 8.50 37.16 0.32 -1.21 16 22 N -0.53 -5.47 4.30 -226.69 -0.98 -6.44 16 23 C 0.05 0.50 4.63 -3.83 -0.02 0.48 16 24 C -0.12 -1.19 6.09 -26.65 -0.16 -1.35 16 25 C -0.12 -1.00 6.00 -26.61 -0.16 -1.16 16 26 C -0.12 -0.98 6.09 -26.65 -0.16 -1.14 16 27 C 0.05 0.48 5.02 -3.84 -0.02 0.46 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.69 7.67 -51.93 -0.40 0.29 16 30 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 1.53 7.02 -51.93 -0.36 1.17 16 34 H 0.06 1.03 7.02 -51.92 -0.36 0.66 16 35 H 0.42 5.88 8.58 -34.47 -0.30 5.59 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.07 0.90 6.17 -51.93 -0.32 0.58 16 38 H 0.06 0.52 6.52 -51.93 -0.34 0.18 16 39 H 0.06 0.45 6.65 -51.93 -0.35 0.11 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.03 0.33 6.62 -51.92 -0.34 -0.01 16 42 H 0.08 1.06 6.14 -51.93 -0.32 0.74 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 50 H 0.03 0.27 6.73 -51.93 -0.35 -0.07 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -31.69 388.41 -11.21 -42.91 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -8.70 Total: 3.80 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -0.03 Total: -8.77 kcal Atomic # 7 Polarization: -67.65 SS G_CDS: -0.77 Total: -68.42 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -1.88 Total: -45.83 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.66 Total: 54.27 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.69 -11.21 -42.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.900 kcal (2) G-P(sol) polarization free energy of solvation -31.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds