Wall clock time and date at job start Tue Mar 31 2020 17:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47169 * 2 1 4 4 C 1.50706 * 109.46626 * 240.00825 * 2 1 3 5 5 H 1.07999 * 119.99433 * 239.99768 * 4 2 1 6 6 C 1.37871 * 120.00236 * 59.99711 * 4 2 1 7 7 N 1.31509 * 120.00376 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99846 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47019 * 90.00103 * 8 6 4 10 10 H 1.48501 * 109.47000 * 210.00061 * 8 6 4 11 11 H 1.48501 * 109.47230 * 330.00284 * 8 6 4 12 12 N 1.46489 * 109.47367 * 120.00634 * 2 1 3 13 13 C 1.46504 * 120.00051 * 59.99646 * 12 2 1 14 14 S 1.65606 * 120.00129 * 239.99892 * 12 2 1 15 15 O 1.42105 * 106.40008 * 336.45751 * 14 12 2 16 16 O 1.42098 * 106.40370 * 203.53936 * 14 12 2 17 17 N 1.65595 * 107.22013 * 89.99663 * 14 12 2 18 18 C 1.46508 * 119.99876 * 65.00349 * 17 14 12 19 19 C 1.52991 * 109.47282 * 164.99994 * 18 17 14 20 20 H 1.09002 * 109.47259 * 64.99767 * 19 18 17 21 21 C 1.52999 * 109.47494 * 184.99639 * 19 18 17 22 22 N 1.46905 * 109.47360 * 305.00194 * 19 18 17 23 23 C 1.46845 * 110.99421 * 299.21196 * 22 19 18 24 24 C 1.53038 * 109.52157 * 174.15938 * 23 22 19 25 25 C 1.53122 * 109.27948 * 59.17659 * 24 23 22 26 26 C 1.53118 * 109.16064 * 302.34753 * 25 24 23 27 27 C 1.46839 * 111.00129 * 174.99866 * 22 19 18 28 28 H 1.09001 * 109.47294 * 59.99252 * 1 2 3 29 29 H 1.08997 * 109.47095 * 179.97438 * 1 2 3 30 30 H 1.09010 * 109.46956 * 299.99542 * 1 2 3 31 31 H 0.96998 * 120.00587 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47095 * 270.00091 * 13 12 2 33 33 H 1.08991 * 109.46942 * 30.00504 * 13 12 2 34 34 H 1.09009 * 109.46796 * 150.00143 * 13 12 2 35 35 H 0.96997 * 120.00034 * 245.00377 * 17 14 12 36 36 H 1.09006 * 109.46715 * 285.00199 * 18 17 14 37 37 H 1.08993 * 109.46869 * 44.99478 * 18 17 14 38 38 H 1.09002 * 109.46763 * 59.99825 * 21 19 18 39 39 H 1.08997 * 109.47642 * 179.97438 * 21 19 18 40 40 H 1.08996 * 109.47199 * 300.00452 * 21 19 18 41 41 H 1.09008 * 109.46270 * 294.17258 * 23 22 19 42 42 H 1.08996 * 109.46872 * 54.13875 * 23 22 19 43 43 H 1.08991 * 109.50211 * 299.23643 * 24 23 22 44 44 H 1.09001 * 109.53289 * 179.13310 * 24 23 22 45 45 H 1.08994 * 109.52551 * 182.44011 * 25 24 23 46 46 H 1.09000 * 109.57319 * 62.27991 * 25 24 23 47 47 H 1.09002 * 109.50125 * 297.71439 * 26 25 24 48 48 H 1.08998 * 109.53422 * 177.61411 * 26 25 24 49 49 H 1.09000 * 109.46858 * 305.85178 * 27 22 19 50 50 H 1.09004 * 109.46263 * 65.83354 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2307 5 1 2.6531 -1.5884 -1.1316 6 6 1.6991 -0.2391 -2.4828 7 7 0.9434 0.8304 -2.6034 8 14 2.3222 -1.1192 -4.0081 9 1 1.3445 -2.1612 -4.4126 10 1 2.4870 -0.1397 -5.1121 11 1 3.6306 -1.7563 -3.7122 12 7 2.0184 -0.6907 1.1960 13 6 1.6644 -2.0933 1.4277 14 16 2.9705 0.1140 2.2861 15 8 3.5795 1.1828 1.5748 16 8 3.7119 -0.8791 2.9812 17 7 1.9609 0.8088 3.3998 18 6 1.1512 -0.0356 4.2817 19 6 0.6090 0.8070 5.4379 20 1 -0.0774 1.5591 5.0487 21 6 -0.1319 -0.0975 6.4246 22 7 1.7247 1.4713 6.1250 23 6 2.6620 0.4864 6.6798 24 6 3.8804 1.2095 7.2584 25 6 3.4213 2.1776 8.3524 26 6 2.4093 3.1621 7.7599 27 6 1.2336 2.3824 7.1666 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 0.7093 1.1621 -3.4843 32 1 0.7376 -2.1445 1.9991 33 1 1.5295 -2.5968 0.4706 34 1 2.4630 -2.5820 1.9861 35 1 1.9057 1.7748 3.4682 36 1 0.3190 -0.4570 3.7177 37 1 1.7672 -0.8427 4.6780 38 1 0.5544 -0.8496 6.8138 39 1 -0.5178 0.5027 7.2486 40 1 -0.9597 -0.5903 5.9148 41 1 2.1680 -0.0811 7.4685 42 1 2.9839 -0.1933 5.8908 43 1 4.3828 1.7660 6.4674 44 1 4.5692 0.4797 7.6840 45 1 4.2808 2.7262 8.7374 46 1 2.9537 1.6180 9.1625 47 1 2.8887 3.7494 6.9767 48 1 2.0465 3.8274 8.5433 49 1 0.5180 3.0799 6.7312 50 1 0.7464 1.8060 7.9532 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800902228.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:10 Heat of formation + Delta-G solvation = -103.845774 kcal Electronic energy + Delta-G solvation = -29081.413649 eV Core-core repulsion = 25269.045349 eV Total energy + Delta-G solvation = -3812.368300 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.49205 -38.26975 -37.85874 -36.87765 -36.82224 -34.50769 -34.20575 -31.71835 -30.89573 -30.67725 -27.21938 -27.02631 -26.71377 -25.18466 -23.90622 -22.59599 -21.70715 -20.17671 -20.06190 -18.74398 -18.56137 -18.08616 -17.53519 -17.04021 -16.74001 -16.10903 -15.72440 -15.44475 -15.13273 -15.09489 -14.98284 -14.77340 -14.46559 -14.25602 -13.94804 -13.75008 -13.58018 -13.44186 -13.39851 -13.12222 -13.09549 -12.98629 -12.93379 -12.86011 -12.68180 -12.59350 -12.38922 -12.27177 -12.15299 -12.11031 -11.88343 -11.61955 -11.58390 -11.21011 -11.14335 -11.11197 -10.49447 -10.32532 -9.62141 -9.12012 -8.10510 -6.23972 -0.23782 1.42347 1.44728 1.54161 2.13618 2.44432 2.67923 3.00126 3.17700 3.50600 3.76435 3.90824 4.00450 4.07188 4.13138 4.23809 4.35911 4.37541 4.47013 4.51690 4.62495 4.65365 4.71372 4.77271 4.78897 4.81413 4.88130 4.95795 5.00468 5.03925 5.05818 5.10786 5.12428 5.15876 5.20075 5.25885 5.28930 5.35191 5.36896 5.52249 5.62902 5.73439 5.90445 6.12050 6.20827 6.27442 6.31804 6.33801 6.83840 7.44781 8.93654 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023533 B = 0.003172 C = 0.003095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.509669 B = 8824.721801 C = 9044.912502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.274 3.726 3 H 0.022 0.978 4 C -0.540 4.540 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.913 5.913 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.284 1.284 11 H -0.275 1.275 12 N -0.997 5.997 13 C 0.091 3.909 14 S 2.796 3.204 15 O -1.024 7.024 16 O -1.011 7.011 17 N -1.105 6.105 18 C 0.123 3.877 19 C 0.079 3.921 20 H 0.097 0.903 21 C -0.179 4.179 22 N -0.542 5.542 23 C 0.049 3.951 24 C -0.122 4.122 25 C -0.116 4.116 26 C -0.117 4.117 27 C 0.055 3.945 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.422 0.578 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.047 0.953 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.078 0.922 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.261 -0.228 22.811 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.170 3.830 3 H 0.040 0.960 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.781 3.219 9 H -0.194 1.194 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.839 5.839 13 C -0.054 4.054 14 S 2.805 3.195 15 O -1.008 7.008 16 O -0.995 6.995 17 N -0.868 5.868 18 C -0.004 4.004 19 C -0.031 4.031 20 H 0.115 0.885 21 C -0.239 4.239 22 N -0.266 5.266 23 C -0.079 4.079 24 C -0.160 4.160 25 C -0.153 4.153 26 C -0.155 4.155 27 C -0.072 4.072 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.257 0.743 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.085 0.915 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.097 0.903 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.104 0.003 22.316 22.531 hybrid contribution -0.298 -0.335 -0.680 0.814 sum -3.402 -0.333 21.636 21.904 Atomic orbital electron populations 1.21887 0.96673 1.00188 1.00430 1.18365 0.92314 0.91211 0.81134 0.96029 1.21681 1.31627 1.13055 0.91594 0.92535 1.25633 0.95245 0.95714 1.01652 1.69974 1.37354 1.23613 1.24325 0.85606 0.78785 0.78448 0.79080 1.19363 1.20961 1.20022 1.57546 1.69961 1.21068 1.35320 1.21493 1.00541 0.80777 1.02623 1.01136 0.73704 0.72229 0.72382 1.93538 1.76125 1.57539 1.73579 1.93484 1.70063 1.61404 1.74504 1.55461 1.62131 1.18050 1.51147 1.21538 0.94845 0.92997 0.91011 1.21897 0.91827 0.96179 0.93225 0.88489 1.22359 1.01244 1.00340 0.99940 1.62036 1.15727 1.19536 1.29332 1.22137 0.93634 0.94051 0.98095 1.21611 0.97084 0.98913 0.98356 1.21542 0.99206 0.97271 0.97290 1.21597 0.96036 0.97769 1.00082 1.22134 0.97004 0.95204 0.92895 0.91711 0.93912 0.94488 0.92653 0.91185 0.91118 0.91158 0.74287 0.90209 0.91153 0.92227 0.91147 0.90593 0.93506 0.91996 0.93068 0.91132 0.91461 0.91524 0.92475 0.90118 0.90346 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.90 8.97 71.98 0.65 -5.25 16 2 C 0.27 13.60 2.62 44.25 0.12 13.71 16 3 H 0.02 1.24 6.91 -2.38 -0.02 1.22 16 4 C -0.54 -29.56 7.99 25.60 0.20 -29.36 16 5 H 0.06 3.07 7.33 -2.91 -0.02 3.05 16 6 C 0.02 0.95 5.30 84.65 0.45 1.40 16 7 N -0.91 -51.71 11.32 21.44 0.24 -51.47 16 8 Si 0.96 43.62 29.54 68.60 2.03 45.65 16 9 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 N -1.00 -41.05 3.12 -520.44 -1.62 -42.68 16 13 C 0.09 3.09 9.66 127.77 1.23 4.33 16 14 S 2.80 111.26 6.14 -56.49 -0.35 110.91 16 15 O -1.02 -50.48 16.70 -128.00 -2.14 -52.61 16 16 O -1.01 -41.69 16.21 -128.00 -2.07 -43.76 16 17 N -1.10 -32.39 5.80 -187.49 -1.09 -33.47 16 18 C 0.12 2.76 5.26 86.37 0.45 3.22 16 19 C 0.08 1.39 2.48 44.91 0.11 1.50 16 20 H 0.10 1.62 8.08 -2.39 -0.02 1.60 16 21 C -0.18 -2.40 8.50 71.98 0.61 -1.79 16 22 N -0.54 -10.42 4.30 -871.13 -3.75 -14.17 16 23 C 0.05 0.98 4.63 86.33 0.40 1.38 16 24 C -0.12 -2.36 6.09 30.65 0.19 -2.17 16 25 C -0.12 -1.73 6.00 30.67 0.18 -1.55 16 26 C -0.12 -1.74 6.09 30.65 0.19 -1.55 16 27 C 0.05 0.84 5.02 86.33 0.43 1.27 16 28 H 0.06 3.27 6.07 -2.39 -0.01 3.25 16 29 H 0.04 1.77 7.67 -2.39 -0.02 1.75 16 30 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.07 2.56 7.02 -2.39 -0.02 2.55 16 34 H 0.07 2.25 7.02 -2.38 -0.02 2.23 16 35 H 0.42 11.77 8.58 -96.75 -0.83 10.94 16 36 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 1.65 6.17 -2.39 -0.01 1.63 16 38 H 0.06 0.83 6.52 -2.39 -0.02 0.82 16 39 H 0.07 0.82 6.65 -2.39 -0.02 0.81 16 40 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.05 0.81 6.62 -2.38 -0.02 0.80 16 42 H 0.06 1.52 6.14 -2.39 -0.01 1.51 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 47 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 48 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 50 H 0.04 0.59 6.73 -2.38 -0.02 0.57 16 Total: -1.00 -68.84 388.41 -3.44 -72.28 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: 0.09 Total: 24.18 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: 5.22 Total: -14.86 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -6.22 Total: -141.78 kcal Atomic # 8 Polarization: -92.16 SS G_CDS: -4.21 Total: -96.38 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Atomic # 16 Polarization: 111.26 SS G_CDS: -0.35 Total: 110.91 kcal Total: -68.84 -3.44 -72.28 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902228.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.563 kcal (2) G-P(sol) polarization free energy of solvation -68.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds