Wall clock time and date at job start Tue Mar 31 2020 17:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47269 * 2 1 4 4 C 1.50700 * 109.47036 * 239.99510 * 2 1 3 5 5 H 1.07996 * 120.00341 * 245.61315 * 4 2 1 6 6 C 1.37875 * 119.99815 * 65.61740 * 4 2 1 7 7 N 1.31518 * 120.00181 * 199.73455 * 6 4 2 8 8 Si 1.86807 * 120.00227 * 20.01275 * 6 4 2 9 9 H 1.48493 * 109.47388 * 179.72427 * 8 6 4 10 10 H 1.48506 * 109.46956 * 299.72635 * 8 6 4 11 11 H 1.48498 * 109.46822 * 59.72231 * 8 6 4 12 12 N 1.46504 * 109.46666 * 120.00128 * 2 1 3 13 13 C 1.46496 * 120.00285 * 59.99710 * 12 2 1 14 14 S 1.65599 * 119.99602 * 239.99681 * 12 2 1 15 15 O 1.42102 * 106.40094 * 203.53960 * 14 12 2 16 16 O 1.42100 * 106.40481 * 336.45941 * 14 12 2 17 17 N 1.65599 * 107.22020 * 90.00361 * 14 12 2 18 18 C 1.46501 * 119.99912 * 64.99056 * 17 14 12 19 19 C 1.53003 * 109.46767 * 162.74262 * 18 17 14 20 20 H 1.08997 * 109.47532 * 295.66569 * 19 18 17 21 21 C 1.53005 * 109.47189 * 175.66114 * 19 18 17 22 22 N 1.46903 * 109.46919 * 55.66434 * 19 18 17 23 23 C 1.46848 * 110.99695 * 188.60023 * 22 19 18 24 24 C 1.53037 * 109.51924 * 174.16181 * 23 22 19 25 25 C 1.53117 * 109.28123 * 59.17801 * 24 23 22 26 26 C 1.53113 * 109.16208 * 302.34447 * 25 24 23 27 27 C 1.46840 * 110.99988 * 64.39075 * 22 19 18 28 28 H 1.09003 * 109.46500 * 54.46754 * 1 2 3 29 29 H 1.08995 * 109.47563 * 174.46396 * 1 2 3 30 30 H 1.09003 * 109.47149 * 294.47099 * 1 2 3 31 31 H 0.96997 * 119.99398 * 355.23751 * 7 6 4 32 32 H 1.09007 * 109.47048 * 89.99720 * 13 12 2 33 33 H 1.09001 * 109.47412 * 209.99812 * 13 12 2 34 34 H 1.09006 * 109.47090 * 329.99945 * 13 12 2 35 35 H 0.97001 * 119.99998 * 244.99995 * 17 14 12 36 36 H 1.08991 * 109.47551 * 282.74521 * 18 17 14 37 37 H 1.08997 * 109.47077 * 42.75189 * 18 17 14 38 38 H 1.08999 * 109.46899 * 300.00228 * 21 19 18 39 39 H 1.08998 * 109.46670 * 60.00384 * 21 19 18 40 40 H 1.08994 * 109.47257 * 180.02562 * 21 19 18 41 41 H 1.08995 * 109.46200 * 294.17165 * 23 22 19 42 42 H 1.08998 * 109.46657 * 54.14517 * 23 22 19 43 43 H 1.08998 * 109.50375 * 299.23339 * 24 23 22 44 44 H 1.09003 * 109.50304 * 179.11683 * 24 23 22 45 45 H 1.09001 * 109.52358 * 182.43656 * 25 24 23 46 46 H 1.08999 * 109.57719 * 62.28320 * 25 24 23 47 47 H 1.09002 * 109.50194 * 297.71611 * 26 25 24 48 48 H 1.09004 * 109.54215 * 177.61521 * 26 25 24 49 49 H 1.09000 * 109.46601 * 305.85157 * 27 22 19 50 50 H 1.09003 * 109.46885 * 65.83272 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5764 -1.6384 -1.1339 6 6 1.7974 -0.1759 -2.4794 7 7 1.8731 -0.9404 -3.5468 8 14 1.3790 1.6361 -2.6562 9 1 1.1802 1.9605 -4.0915 10 1 0.1328 1.9320 -1.9046 11 1 2.4913 2.4562 -2.1127 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7117 -0.8790 2.9815 16 8 3.5795 1.1828 1.5749 17 7 1.9607 0.8090 3.3998 18 6 1.1508 -0.0352 4.2816 19 6 0.6551 0.7944 5.4678 20 1 1.5068 1.1194 6.0652 21 6 -0.2784 -0.0569 6.3310 22 7 -0.0728 1.9704 4.9726 23 6 -0.3873 2.8949 6.0694 24 6 -1.0131 4.1700 5.4998 25 6 -2.2870 3.8083 4.7311 26 6 -1.9398 2.8074 3.6257 27 6 -1.2871 1.5717 4.2496 28 1 -0.3632 0.5973 -0.8364 29 1 -0.3634 -1.0228 -0.0991 30 1 -0.3633 0.4257 0.9354 31 1 2.1614 -1.8627 -3.4632 32 1 2.4156 -2.7378 0.9717 33 1 1.6236 -2.2852 2.5003 34 1 0.6902 -2.3002 0.9847 35 1 1.9054 1.7750 3.4682 36 1 0.2964 -0.4244 3.7280 37 1 1.7559 -0.8651 4.6465 38 1 -1.1301 -0.3818 5.7335 39 1 0.2618 -0.9294 6.6984 40 1 -0.6319 0.5342 7.1757 41 1 -1.0898 2.4202 6.7543 42 1 0.5277 3.1474 6.6052 43 1 -0.3058 4.6526 4.8253 44 1 -1.2607 4.8495 6.3153 45 1 -2.7126 4.7083 4.2873 46 1 -3.0105 3.3614 5.4130 47 1 -1.2471 3.2686 2.9217 48 1 -2.8492 2.5132 3.1015 49 1 -1.0257 0.8632 3.4636 50 1 -1.9856 1.1034 4.9431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800902230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:14 Heat of formation + Delta-G solvation = -79.281312 kcal Electronic energy + Delta-G solvation = -29499.637197 eV Core-core repulsion = 25688.334091 eV Total energy + Delta-G solvation = -3811.303105 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.78711 -36.73332 -36.33897 -35.99321 -35.24530 -33.30163 -32.51924 -31.04331 -30.00368 -29.78229 -26.01247 -25.69849 -24.58478 -24.44449 -23.24560 -21.01963 -20.56652 -19.41593 -18.67644 -17.52652 -17.25746 -16.83083 -16.50780 -16.13134 -15.19976 -14.95026 -14.70237 -14.42850 -14.11281 -13.87021 -13.82168 -13.60462 -13.26089 -13.19813 -12.94188 -12.91909 -12.44478 -12.28481 -12.11553 -12.04861 -12.01586 -11.70094 -11.60802 -11.53944 -11.48387 -11.27205 -11.20220 -10.98210 -10.86409 -10.73866 -10.56706 -10.46361 -10.40413 -9.94202 -9.76353 -9.25837 -9.13521 -8.47076 -8.35637 -7.99799 -6.45844 -4.07084 1.18715 3.36553 3.42703 3.51321 3.62832 3.69406 4.12525 4.47312 4.48719 4.56785 4.69566 4.72036 4.86182 4.95494 5.06422 5.06946 5.13515 5.23048 5.26562 5.31136 5.36536 5.40577 5.47972 5.49473 5.53494 5.62481 5.73829 5.75107 5.79617 5.90569 5.96378 6.02008 6.03684 6.09606 6.22138 6.25599 6.39758 6.42338 6.57513 6.61943 6.90002 6.92347 6.98371 7.29153 7.37402 7.59149 8.02234 8.39181 8.92371 9.60474 10.92559 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.004498 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.509517 B = 6223.483846 C = 7348.864859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.248 3.752 3 H 0.047 0.953 4 C -0.606 4.606 5 H 0.063 0.937 6 C 0.036 3.964 7 N -0.901 5.901 8 Si 1.033 2.967 9 H -0.283 1.283 10 H -0.273 1.273 11 H -0.276 1.276 12 N -0.985 5.985 13 C 0.112 3.888 14 S 2.778 3.222 15 O -0.996 6.996 16 O -0.976 6.976 17 N -1.123 6.123 18 C 0.130 3.870 19 C 0.075 3.925 20 H 0.090 0.910 21 C -0.186 4.186 22 N -0.529 5.529 23 C 0.056 3.944 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.119 4.119 27 C 0.049 3.951 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.026 0.974 31 H 0.268 0.732 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.070 0.930 35 H 0.420 0.580 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.082 0.918 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.598 5.740 21.203 23.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.143 3.857 3 H 0.064 0.936 4 C -0.645 4.645 5 H 0.081 0.919 6 C -0.170 4.170 7 N -0.534 5.534 8 Si 0.861 3.139 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.201 1.201 12 N -0.827 5.827 13 C -0.034 4.034 14 S 2.787 3.213 15 O -0.980 6.980 16 O -0.960 6.960 17 N -0.884 5.884 18 C 0.003 3.997 19 C -0.035 4.035 20 H 0.108 0.892 21 C -0.246 4.246 22 N -0.253 5.253 23 C -0.072 4.072 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.157 4.157 27 C -0.078 4.078 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.255 0.745 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.100 0.900 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -8.729 6.985 19.738 22.685 hybrid contribution -0.575 -1.358 1.697 2.249 sum -9.305 5.627 21.435 24.036 Atomic orbital electron populations 1.22501 0.98770 1.01287 0.99270 1.18936 0.90718 0.92998 0.83051 0.93552 1.22146 1.41006 1.10591 0.90802 0.91858 1.25664 0.94287 1.05082 0.92001 1.70871 1.41923 1.08854 1.31779 0.84225 0.77515 0.75818 0.76330 1.20917 1.19961 1.20145 1.57485 1.70072 1.19789 1.35317 1.21134 1.01665 0.82041 0.98590 1.01966 0.73704 0.73125 0.72510 1.93536 1.69123 1.60863 1.74446 1.93605 1.74391 1.55980 1.72032 1.55994 1.61924 1.18060 1.52398 1.21235 0.94889 0.92810 0.90799 1.21909 0.96745 0.90100 0.94776 0.89168 1.22424 1.00785 1.00963 1.00386 1.62016 1.23091 1.14575 1.25668 1.22077 0.99614 0.93265 0.92244 1.21588 0.97360 0.96666 0.99906 1.21566 0.97217 0.99259 0.97740 1.21598 1.00429 0.95689 0.97975 1.22188 0.90316 0.97587 0.97730 0.92095 0.93022 0.95462 0.92177 0.93250 0.93324 0.91116 0.74524 0.92005 0.90356 0.91856 0.91547 0.92219 0.94858 0.90907 0.90903 0.91855 0.91955 0.92621 0.90749 0.91581 0.89963 0.94690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 8.73 37.16 0.32 -2.90 16 2 C 0.25 5.76 2.21 -69.08 -0.15 5.61 16 3 H 0.05 1.14 5.53 -51.93 -0.29 0.85 16 4 C -0.61 -16.75 8.65 -34.44 -0.30 -17.05 16 5 H 0.06 1.88 7.75 -52.49 -0.41 1.48 16 6 C 0.04 1.03 5.32 -17.82 -0.09 0.93 16 7 N -0.90 -27.24 13.70 55.43 0.76 -26.48 16 8 Si 1.03 25.06 26.49 -169.99 -4.50 20.56 16 9 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 10 H -0.27 -5.92 5.63 56.52 0.32 -5.60 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 12 N -0.98 -19.91 3.12 -115.85 -0.36 -20.27 16 13 C 0.11 1.97 9.47 59.84 0.57 2.54 16 14 S 2.78 53.53 6.09 -107.50 -0.66 52.87 16 15 O -1.00 -20.58 16.65 -57.17 -0.95 -21.53 16 16 O -0.98 -22.51 16.70 -57.17 -0.95 -23.46 16 17 N -1.12 -15.95 5.97 -10.61 -0.06 -16.01 16 18 C 0.13 1.49 5.41 -4.04 -0.02 1.46 16 19 C 0.07 0.69 2.55 -67.71 -0.17 0.52 16 20 H 0.09 0.82 8.01 -51.93 -0.42 0.40 16 21 C -0.19 -1.40 8.47 37.16 0.31 -1.09 16 22 N -0.53 -5.02 3.89 -226.69 -0.88 -5.90 16 23 C 0.06 0.45 5.10 -3.83 -0.02 0.43 16 24 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 25 C -0.12 -0.96 6.00 -26.61 -0.16 -1.12 16 26 C -0.12 -1.12 6.09 -26.65 -0.16 -1.28 16 27 C 0.05 0.47 4.57 -3.83 -0.02 0.45 16 28 H 0.06 1.28 5.04 -51.93 -0.26 1.02 16 29 H 0.05 1.03 6.90 -51.93 -0.36 0.67 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.27 8.08 8.73 -40.82 -0.36 7.72 16 32 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.05 0.70 7.79 -51.93 -0.40 0.29 16 34 H 0.07 1.19 6.54 -51.93 -0.34 0.85 16 35 H 0.42 5.64 8.10 -34.47 -0.28 5.36 16 36 H 0.06 0.68 6.60 -51.93 -0.34 0.34 16 37 H 0.08 0.89 7.71 -51.93 -0.40 0.49 16 38 H 0.06 0.49 6.47 -51.93 -0.34 0.15 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.42 6.76 -51.93 -0.35 0.07 16 41 H 0.03 0.26 6.83 -51.93 -0.35 -0.10 16 42 H 0.07 0.56 8.03 -51.93 -0.42 0.14 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.08 0.89 6.25 -51.93 -0.32 0.56 16 50 H 0.03 0.31 6.58 -51.93 -0.34 -0.03 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -33.13 383.99 -10.54 -43.67 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.66 Total: 3.33 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -0.06 Total: -12.57 kcal Atomic # 7 Polarization: -68.12 SS G_CDS: -0.55 Total: -68.66 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.91 Total: -44.99 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -4.50 Total: 20.56 kcal Atomic # 16 Polarization: 53.53 SS G_CDS: -0.66 Total: 52.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.13 -10.54 -43.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.609 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds