Wall clock time and date at job start Tue Mar 31 2020 17:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.47269 * 2 1 4 4 C 1.50700 * 109.47036 * 239.99510 * 2 1 3 5 5 H 1.07996 * 120.00341 * 245.61315 * 4 2 1 6 6 C 1.37875 * 119.99815 * 65.61740 * 4 2 1 7 7 N 1.31518 * 120.00181 * 199.73455 * 6 4 2 8 8 Si 1.86807 * 120.00227 * 20.01275 * 6 4 2 9 9 H 1.48493 * 109.47388 * 179.72427 * 8 6 4 10 10 H 1.48506 * 109.46956 * 299.72635 * 8 6 4 11 11 H 1.48498 * 109.46822 * 59.72231 * 8 6 4 12 12 N 1.46504 * 109.46666 * 120.00128 * 2 1 3 13 13 C 1.46496 * 120.00285 * 59.99710 * 12 2 1 14 14 S 1.65599 * 119.99602 * 239.99681 * 12 2 1 15 15 O 1.42102 * 106.40094 * 203.53960 * 14 12 2 16 16 O 1.42100 * 106.40481 * 336.45941 * 14 12 2 17 17 N 1.65599 * 107.22020 * 90.00361 * 14 12 2 18 18 C 1.46501 * 119.99912 * 64.99056 * 17 14 12 19 19 C 1.53003 * 109.46767 * 162.74262 * 18 17 14 20 20 H 1.08997 * 109.47532 * 295.66569 * 19 18 17 21 21 C 1.53005 * 109.47189 * 175.66114 * 19 18 17 22 22 N 1.46903 * 109.46919 * 55.66434 * 19 18 17 23 23 C 1.46848 * 110.99695 * 188.60023 * 22 19 18 24 24 C 1.53037 * 109.51924 * 174.16181 * 23 22 19 25 25 C 1.53117 * 109.28123 * 59.17801 * 24 23 22 26 26 C 1.53113 * 109.16208 * 302.34447 * 25 24 23 27 27 C 1.46840 * 110.99988 * 64.39075 * 22 19 18 28 28 H 1.09003 * 109.46500 * 54.46754 * 1 2 3 29 29 H 1.08995 * 109.47563 * 174.46396 * 1 2 3 30 30 H 1.09003 * 109.47149 * 294.47099 * 1 2 3 31 31 H 0.96997 * 119.99398 * 355.23751 * 7 6 4 32 32 H 1.09007 * 109.47048 * 89.99720 * 13 12 2 33 33 H 1.09001 * 109.47412 * 209.99812 * 13 12 2 34 34 H 1.09006 * 109.47090 * 329.99945 * 13 12 2 35 35 H 0.97001 * 119.99998 * 244.99995 * 17 14 12 36 36 H 1.08991 * 109.47551 * 282.74521 * 18 17 14 37 37 H 1.08997 * 109.47077 * 42.75189 * 18 17 14 38 38 H 1.08999 * 109.46899 * 300.00228 * 21 19 18 39 39 H 1.08998 * 109.46670 * 60.00384 * 21 19 18 40 40 H 1.08994 * 109.47257 * 180.02562 * 21 19 18 41 41 H 1.08995 * 109.46200 * 294.17165 * 23 22 19 42 42 H 1.08998 * 109.46657 * 54.14517 * 23 22 19 43 43 H 1.08998 * 109.50375 * 299.23339 * 24 23 22 44 44 H 1.09003 * 109.50304 * 179.11683 * 24 23 22 45 45 H 1.09001 * 109.52358 * 182.43656 * 25 24 23 46 46 H 1.08999 * 109.57719 * 62.28320 * 25 24 23 47 47 H 1.09002 * 109.50194 * 297.71611 * 26 25 24 48 48 H 1.09004 * 109.54215 * 177.61521 * 26 25 24 49 49 H 1.09000 * 109.46601 * 305.85157 * 27 22 19 50 50 H 1.09003 * 109.46885 * 65.83272 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5764 -1.6384 -1.1339 6 6 1.7974 -0.1759 -2.4794 7 7 1.8731 -0.9404 -3.5468 8 14 1.3790 1.6361 -2.6562 9 1 1.1802 1.9605 -4.0915 10 1 0.1328 1.9320 -1.9046 11 1 2.4913 2.4562 -2.1127 12 7 2.0183 -0.6907 1.1962 13 6 1.6643 -2.0932 1.4281 14 16 2.9703 0.1141 2.2863 15 8 3.7117 -0.8790 2.9815 16 8 3.5795 1.1828 1.5749 17 7 1.9607 0.8090 3.3998 18 6 1.1508 -0.0352 4.2816 19 6 0.6551 0.7944 5.4678 20 1 1.5068 1.1194 6.0652 21 6 -0.2784 -0.0569 6.3310 22 7 -0.0728 1.9704 4.9726 23 6 -0.3873 2.8949 6.0694 24 6 -1.0131 4.1700 5.4998 25 6 -2.2870 3.8083 4.7311 26 6 -1.9398 2.8074 3.6257 27 6 -1.2871 1.5717 4.2496 28 1 -0.3632 0.5973 -0.8364 29 1 -0.3634 -1.0228 -0.0991 30 1 -0.3633 0.4257 0.9354 31 1 2.1614 -1.8627 -3.4632 32 1 2.4156 -2.7378 0.9717 33 1 1.6236 -2.2852 2.5003 34 1 0.6902 -2.3002 0.9847 35 1 1.9054 1.7750 3.4682 36 1 0.2964 -0.4244 3.7280 37 1 1.7559 -0.8651 4.6465 38 1 -1.1301 -0.3818 5.7335 39 1 0.2618 -0.9294 6.6984 40 1 -0.6319 0.5342 7.1757 41 1 -1.0898 2.4202 6.7543 42 1 0.5277 3.1474 6.6052 43 1 -0.3058 4.6526 4.8253 44 1 -1.2607 4.8495 6.3153 45 1 -2.7126 4.7083 4.2873 46 1 -3.0105 3.3614 5.4130 47 1 -1.2471 3.2686 2.9217 48 1 -2.8492 2.5132 3.1015 49 1 -1.0257 0.8632 3.4636 50 1 -1.9856 1.1034 4.9431 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800902230.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:13 Heat of formation + Delta-G solvation = -104.725727 kcal Electronic energy + Delta-G solvation = -29500.740549 eV Core-core repulsion = 25688.334091 eV Total energy + Delta-G solvation = -3812.406458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48106 -38.37309 -38.02377 -36.91603 -36.87189 -34.60470 -34.22030 -31.70013 -31.55886 -30.68149 -27.29451 -26.82213 -26.54544 -25.15937 -23.90060 -22.45364 -21.67710 -20.20151 -20.07871 -19.56715 -18.77713 -18.30197 -17.42352 -17.32057 -16.50814 -15.84812 -15.70567 -15.41794 -15.34536 -15.06901 -15.03347 -14.78890 -14.60635 -14.48375 -14.04146 -13.95578 -13.65258 -13.55936 -13.42800 -13.40007 -13.27073 -13.15659 -12.93473 -12.89316 -12.85022 -12.50056 -12.34687 -12.23484 -12.11531 -11.78009 -11.64836 -11.58907 -11.53614 -11.20835 -11.14968 -11.11734 -10.42636 -10.35511 -9.82350 -9.13735 -8.69540 -6.32837 -0.34431 1.43890 1.57216 1.71979 2.03347 2.47295 2.62904 2.97854 3.08414 3.39548 3.78025 3.92235 3.96139 4.03469 4.09591 4.17954 4.35001 4.41337 4.46633 4.50747 4.52582 4.60405 4.64509 4.69123 4.74900 4.76723 4.80676 4.84312 4.89702 4.93692 4.99160 5.06362 5.07600 5.09592 5.15900 5.18199 5.31270 5.33406 5.35021 5.40032 5.56139 5.61605 5.79711 6.02479 6.07893 6.19302 6.26337 6.30526 6.64346 7.42789 8.65690 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012999 B = 0.004498 C = 0.003809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.509517 B = 6223.483846 C = 7348.864859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.248 3.752 3 H 0.038 0.962 4 C -0.608 4.608 5 H 0.026 0.974 6 C -0.013 4.013 7 N -0.932 5.932 8 Si 1.063 2.937 9 H -0.285 1.285 10 H -0.226 1.226 11 H -0.277 1.277 12 N -0.993 5.993 13 C 0.107 3.893 14 S 2.793 3.207 15 O -1.012 7.012 16 O -1.018 7.018 17 N -1.104 6.104 18 C 0.120 3.880 19 C 0.079 3.921 20 H 0.093 0.907 21 C -0.180 4.180 22 N -0.541 5.541 23 C 0.057 3.943 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.121 4.121 27 C 0.050 3.950 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.253 0.747 32 H 0.026 0.974 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.426 0.574 36 H 0.072 0.928 37 H 0.082 0.918 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.077 0.923 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.743 6.936 23.983 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.142 3.858 3 H 0.056 0.944 4 C -0.647 4.647 5 H 0.044 0.956 6 C -0.212 4.212 7 N -0.568 5.568 8 Si 0.884 3.116 9 H -0.211 1.211 10 H -0.150 1.150 11 H -0.203 1.203 12 N -0.833 5.833 13 C -0.038 4.038 14 S 2.803 3.197 15 O -0.996 6.996 16 O -1.002 7.002 17 N -0.869 5.869 18 C -0.006 4.006 19 C -0.031 4.031 20 H 0.111 0.889 21 C -0.239 4.239 22 N -0.266 5.266 23 C -0.071 4.071 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.077 4.077 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.263 0.737 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.095 0.905 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -10.886 8.159 22.545 26.332 hybrid contribution 0.159 -1.805 0.943 2.043 sum -10.727 6.353 23.488 26.592 Atomic orbital electron populations 1.22320 0.95848 1.01663 1.01025 1.18757 0.92757 0.92009 0.82295 0.94411 1.22383 1.39877 1.09296 0.93116 0.95567 1.26944 0.94128 1.08245 0.91904 1.70993 1.44588 1.08387 1.32858 0.83883 0.79448 0.71293 0.76933 1.21050 1.15001 1.20285 1.57412 1.70067 1.20889 1.34970 1.21292 1.01258 0.80393 1.00878 1.01278 0.73694 0.72285 0.72491 1.93511 1.69950 1.61521 1.74577 1.93541 1.75918 1.57279 1.73472 1.55513 1.61595 1.18505 1.51244 1.21562 0.94811 0.92969 0.91274 1.21857 0.97256 0.90115 0.93855 0.88898 1.22362 1.00347 1.00982 1.00224 1.62000 1.23279 1.14871 1.26480 1.22104 1.00050 0.92996 0.91935 1.21583 0.96945 0.96801 1.00072 1.21541 0.97426 0.99048 0.97448 1.21601 1.00146 0.95954 0.98140 1.22155 0.90550 0.97373 0.97639 0.92694 0.92968 0.91664 0.93796 0.95502 0.89653 0.90269 0.73681 0.90965 0.90021 0.91785 0.90882 0.91353 0.93995 0.90535 0.92238 0.90475 0.91724 0.91849 0.92508 0.91201 0.91088 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.67 8.73 71.98 0.63 -5.04 16 2 C 0.25 11.31 2.21 44.25 0.10 11.41 16 3 H 0.04 1.82 5.53 -2.39 -0.01 1.81 16 4 C -0.61 -34.23 8.65 25.60 0.22 -34.01 16 5 H 0.03 1.63 7.75 -2.91 -0.02 1.60 16 6 C -0.01 -0.73 5.32 84.65 0.45 -0.28 16 7 N -0.93 -58.09 13.70 21.45 0.29 -57.80 16 8 Si 1.06 49.88 26.49 68.60 1.82 51.70 16 9 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 10 H -0.23 -8.90 5.63 99.48 0.56 -8.34 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 N -0.99 -39.26 3.12 -520.43 -1.62 -40.88 16 13 C 0.11 3.68 9.47 127.77 1.21 4.89 16 14 S 2.79 105.08 6.09 -56.49 -0.34 104.73 16 15 O -1.01 -40.87 16.65 -128.00 -2.13 -43.00 16 16 O -1.02 -46.86 16.70 -128.00 -2.14 -49.00 16 17 N -1.10 -29.02 5.97 -187.50 -1.12 -30.14 16 18 C 0.12 2.40 5.41 86.38 0.47 2.86 16 19 C 0.08 1.22 2.55 44.92 0.11 1.33 16 20 H 0.09 1.40 8.01 -2.39 -0.02 1.38 16 21 C -0.18 -2.07 8.47 71.98 0.61 -1.46 16 22 N -0.54 -8.73 3.89 -871.11 -3.39 -12.12 16 23 C 0.06 0.75 5.10 86.33 0.44 1.19 16 24 C -0.12 -1.53 6.09 30.65 0.19 -1.34 16 25 C -0.12 -1.57 6.00 30.67 0.18 -1.38 16 26 C -0.12 -1.97 6.09 30.65 0.19 -1.78 16 27 C 0.05 0.82 4.57 86.33 0.39 1.21 16 28 H 0.05 2.14 5.04 -2.39 -0.01 2.13 16 29 H 0.05 1.96 6.90 -2.39 -0.02 1.94 16 30 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.25 15.99 8.73 -92.71 -0.81 15.18 16 32 H 0.03 1.01 8.09 -2.38 -0.02 0.99 16 33 H 0.09 2.26 7.79 -2.39 -0.02 2.24 16 34 H 0.08 2.55 6.54 -2.38 -0.02 2.54 16 35 H 0.43 10.57 8.10 -96.74 -0.78 9.79 16 36 H 0.07 1.33 6.60 -2.39 -0.02 1.32 16 37 H 0.08 1.61 7.71 -2.39 -0.02 1.59 16 38 H 0.06 0.75 6.47 -2.39 -0.02 0.73 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.70 6.76 -2.39 -0.02 0.68 16 41 H 0.04 0.50 6.83 -2.39 -0.02 0.48 16 42 H 0.08 0.96 8.03 -2.39 -0.02 0.94 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 47 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 49 H 0.07 1.30 6.25 -2.39 -0.01 1.29 16 50 H 0.04 0.64 6.58 -2.39 -0.02 0.62 16 Total: -1.00 -73.34 383.99 -3.49 -76.83 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -0.04 Total: 22.11 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 5.19 Total: -22.42 kcal Atomic # 7 Polarization: -135.11 SS G_CDS: -5.84 Total: -140.95 kcal Atomic # 8 Polarization: -87.73 SS G_CDS: -4.27 Total: -92.00 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 1.82 Total: 51.70 kcal Atomic # 16 Polarization: 105.08 SS G_CDS: -0.34 Total: 104.73 kcal Total: -73.34 -3.49 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902230.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.897 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds