Wall clock time and date at job start Tue Mar 31 2020 17:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47217 * 120.00184 * 2 1 3 5 5 H 1.08001 * 120.00328 * 120.00051 * 4 2 1 6 6 C 1.37871 * 119.99961 * 300.00183 * 4 2 1 7 7 N 1.31512 * 120.00373 * 0.02562 * 6 4 2 8 8 Si 1.86812 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46626 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47126 * 119.99958 * 8 6 4 11 11 H 1.48498 * 109.46818 * 240.00222 * 8 6 4 12 12 N 1.46497 * 109.47188 * 240.00423 * 2 1 3 13 13 C 1.46496 * 119.99839 * 299.99768 * 12 2 1 14 14 S 1.65603 * 120.00091 * 120.00111 * 12 2 1 15 15 O 1.42095 * 106.40145 * 156.46077 * 14 12 2 16 16 O 1.42095 * 106.40055 * 23.53705 * 14 12 2 17 17 N 1.65603 * 107.21444 * 269.99650 * 14 12 2 18 18 C 1.46503 * 119.99684 * 65.00174 * 17 14 12 19 19 C 1.52999 * 109.46859 * 164.09102 * 18 17 14 20 20 H 1.08997 * 109.47433 * 185.51000 * 19 18 17 21 21 C 1.53004 * 109.47123 * 65.50866 * 19 18 17 22 22 N 1.46901 * 109.47306 * 305.51140 * 19 18 17 23 23 C 1.46846 * 110.99974 * 182.94183 * 22 19 18 24 24 C 1.53043 * 109.52364 * 185.84073 * 23 22 19 25 25 C 1.53129 * 109.27272 * 300.82031 * 24 23 22 26 26 C 1.53113 * 109.21574 * 57.62530 * 25 24 23 27 27 C 1.46842 * 110.99994 * 307.15059 * 22 19 18 28 28 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47336 * 299.99142 * 1 2 3 30 30 H 1.08997 * 109.47579 * 60.00053 * 1 2 3 31 31 H 0.97006 * 120.00708 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47070 * 269.99715 * 13 12 2 33 33 H 1.09000 * 109.47470 * 29.99933 * 13 12 2 34 34 H 1.08998 * 109.47063 * 150.00083 * 13 12 2 35 35 H 0.96998 * 120.00111 * 244.99677 * 17 14 12 36 36 H 1.08999 * 109.47619 * 44.09330 * 18 17 14 37 37 H 1.09002 * 109.47138 * 284.09079 * 18 17 14 38 38 H 1.09000 * 109.46690 * 60.00534 * 21 19 18 39 39 H 1.08998 * 109.47103 * 179.97438 * 21 19 18 40 40 H 1.08990 * 109.47299 * 300.00000 * 21 19 18 41 41 H 1.08995 * 109.46603 * 65.82445 * 23 22 19 42 42 H 1.08997 * 109.45796 * 305.84594 * 23 22 19 43 43 H 1.08996 * 109.50456 * 180.88194 * 24 23 22 44 44 H 1.09001 * 109.50377 * 60.75775 * 24 23 22 45 45 H 1.09005 * 109.51436 * 177.55715 * 25 24 23 46 46 H 1.08998 * 109.52142 * 297.68362 * 25 24 23 47 47 H 1.09002 * 109.50654 * 62.30860 * 26 25 24 48 48 H 1.08992 * 109.50604 * 182.43614 * 26 25 24 49 49 H 1.09007 * 109.46264 * 294.17786 * 27 22 19 50 50 H 1.09000 * 109.46390 * 54.15069 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0080 9 1 3.1474 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9704 0.1144 -2.2862 15 8 3.7118 -0.8787 -2.9815 16 8 3.5793 1.1830 -1.5747 17 7 1.9606 0.8092 -3.3998 18 6 1.0290 1.8620 -2.9873 19 6 0.5118 2.5986 -4.2246 20 1 -0.1036 3.4429 -3.9140 21 6 -0.3265 1.6417 -5.0746 22 7 1.6497 3.0868 -5.0151 23 6 1.1907 3.8603 -6.1759 24 6 2.3903 4.2276 -7.0525 25 6 3.3853 5.0499 -6.2286 26 6 3.8107 4.2421 -4.9995 27 6 2.5697 3.8729 -4.1834 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7086 1.1611 3.4845 32 1 2.4158 -2.7376 -0.9718 33 1 0.6904 -2.3002 -0.9847 34 1 1.6238 -2.2850 -2.5002 35 1 1.9860 0.5192 -4.3250 36 1 1.5431 2.5665 -2.3335 37 1 0.1902 1.4160 -2.4529 38 1 -1.1708 1.2795 -4.4880 39 1 -0.6953 2.1666 -5.9557 40 1 0.2889 0.7975 -5.3852 41 1 0.6984 4.7707 -5.8341 42 1 0.4871 3.2626 -6.7554 43 1 2.0512 4.8151 -7.9057 44 1 2.8749 3.3176 -7.4060 45 1 4.2612 5.2769 -6.8364 46 1 2.9132 5.9788 -5.9086 47 1 4.3183 3.3322 -5.3198 48 1 4.4857 4.8397 -4.3870 49 1 2.0708 4.7833 -3.8508 50 1 2.8677 3.2845 -3.3156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800902233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:20 Heat of formation + Delta-G solvation = -78.080036 kcal Electronic energy + Delta-G solvation = -29402.131422 eV Core-core repulsion = 25590.880408 eV Total energy + Delta-G solvation = -3811.251014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.52421 -36.63560 -36.16064 -35.98029 -35.11627 -32.97281 -32.55296 -31.02267 -29.83921 -29.08035 -26.21444 -25.55299 -25.12754 -24.11938 -22.75372 -20.74791 -20.43171 -19.75247 -18.70814 -17.29956 -16.81118 -16.70898 -16.20522 -15.55526 -14.99415 -14.82490 -14.70363 -14.36389 -14.11941 -13.90568 -13.58163 -13.48066 -13.39849 -13.10454 -13.00436 -12.76362 -12.10629 -11.96796 -11.83340 -11.67579 -11.65329 -11.51615 -11.33278 -11.32327 -11.26003 -11.18032 -11.03232 -10.94664 -10.78470 -10.76309 -10.41427 -10.35666 -10.27046 -10.18140 -9.99111 -9.23004 -9.07487 -8.44616 -8.34779 -7.93197 -6.06731 -4.12496 1.32208 3.28418 3.36703 3.41306 3.60541 3.79100 4.24944 4.41606 4.62353 4.70983 4.79590 4.88470 4.98584 5.06810 5.18031 5.24993 5.30883 5.34201 5.38526 5.50330 5.57862 5.60388 5.65602 5.74264 5.75210 5.76190 5.88043 5.89099 5.91346 6.03901 6.05447 6.19041 6.20088 6.25676 6.31415 6.44406 6.66176 6.79042 6.81148 7.01067 7.06207 7.08884 7.34711 7.56697 7.66082 7.80843 8.05317 8.29361 8.90205 9.53395 10.98948 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.003519 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.024653 B = 7955.877914 C = 8003.746528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.517 4.517 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.993 5.993 13 C 0.112 3.888 14 S 2.781 3.219 15 O -0.999 6.999 16 O -0.978 6.978 17 N -1.120 6.120 18 C 0.124 3.876 19 C 0.075 3.925 20 H 0.051 0.949 21 C -0.144 4.144 22 N -0.528 5.528 23 C 0.053 3.947 24 C -0.116 4.116 25 C -0.121 4.121 26 C -0.117 4.117 27 C 0.045 3.955 28 H 0.033 0.967 29 H 0.092 0.908 30 H 0.012 0.988 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.413 0.587 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.029 0.971 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.056 0.944 47 H 0.070 0.930 48 H 0.066 0.934 49 H 0.031 0.969 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.321 5.688 -17.368 18.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.835 5.835 13 C -0.035 4.035 14 S 2.789 3.211 15 O -0.983 6.983 16 O -0.961 6.961 17 N -0.881 5.881 18 C -0.003 4.003 19 C -0.034 4.034 20 H 0.069 0.931 21 C -0.202 4.202 22 N -0.254 5.254 23 C -0.075 4.075 24 C -0.154 4.154 25 C -0.159 4.159 26 C -0.155 4.155 27 C -0.082 4.082 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.031 0.969 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.247 0.753 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.047 0.953 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.075 0.925 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.196 5.527 -17.191 18.191 hybrid contribution -0.626 0.152 0.854 1.070 sum -2.821 5.678 -16.337 17.524 Atomic orbital electron populations 1.22173 0.98412 0.99785 1.00521 1.18713 0.91156 0.92981 0.80727 0.92406 1.21384 1.31336 1.12924 0.90076 0.91949 1.24896 0.94991 0.95017 0.98974 1.69858 1.36729 1.22796 1.23604 0.86461 0.78602 0.79711 0.82763 1.19740 1.20919 1.21039 1.57710 1.70112 1.19866 1.35850 1.21104 1.01498 0.82111 0.98751 1.01881 0.73596 0.73173 0.72442 1.93538 1.69741 1.60251 1.74806 1.93579 1.73976 1.55893 1.72628 1.55916 1.57131 1.51072 1.23963 1.21378 0.93449 0.89825 0.95688 1.21814 0.91279 0.96898 0.93414 0.93065 1.21860 0.99293 0.99515 0.99496 1.61895 1.15945 1.38883 1.08679 1.22138 0.96914 0.95847 0.92625 1.21574 0.96145 1.00250 0.97382 1.21585 0.98941 0.98278 0.97054 1.21579 0.97177 1.00353 0.96406 1.22250 0.93311 0.96039 0.96624 0.94754 0.88902 0.96935 0.92821 0.93465 0.91108 0.93331 0.75287 0.90436 0.90697 0.91804 0.92633 0.91582 0.95251 0.90545 0.91956 0.91101 0.92083 0.92514 0.91082 0.91487 0.95062 0.89087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.25 8.95 37.16 0.33 -2.92 16 2 C 0.27 6.38 2.62 -69.09 -0.18 6.20 16 3 H 0.06 1.53 6.91 -51.93 -0.36 1.17 16 4 C -0.52 -13.87 8.37 -34.44 -0.29 -14.16 16 5 H 0.06 1.69 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 N -0.99 -20.39 3.12 -115.86 -0.36 -20.75 16 13 C 0.11 2.01 9.53 59.84 0.57 2.58 16 14 S 2.78 54.40 6.09 -107.50 -0.66 53.75 16 15 O -1.00 -21.15 17.21 -57.17 -0.98 -22.13 16 16 O -0.98 -22.48 16.16 -57.17 -0.92 -23.41 16 17 N -1.12 -16.53 5.56 -10.61 -0.06 -16.59 16 18 C 0.12 1.70 5.11 -4.04 -0.02 1.68 16 19 C 0.08 0.83 2.36 -67.71 -0.16 0.68 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 21 C -0.14 -1.35 8.93 37.16 0.33 -1.02 16 22 N -0.53 -5.93 4.17 -226.68 -0.95 -6.87 16 23 C 0.05 0.49 5.27 -3.83 -0.02 0.47 16 24 C -0.12 -1.00 6.10 -26.64 -0.16 -1.17 16 25 C -0.12 -1.11 6.00 -26.61 -0.16 -1.27 16 26 C -0.12 -1.31 6.10 -26.65 -0.16 -1.47 16 27 C 0.05 0.56 5.06 -3.83 -0.02 0.54 16 28 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 29 H 0.09 2.26 6.07 -51.93 -0.32 1.95 16 30 H 0.01 0.22 6.21 -51.93 -0.32 -0.10 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.07 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.05 0.74 7.79 -51.93 -0.40 0.33 16 35 H 0.41 5.39 7.35 -34.47 -0.25 5.13 16 36 H 0.08 1.20 6.13 -51.93 -0.32 0.88 16 37 H 0.08 1.03 6.21 -51.93 -0.32 0.71 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.05 0.45 6.35 -51.93 -0.33 0.12 16 40 H 0.07 0.64 6.92 -51.93 -0.36 0.28 16 41 H 0.03 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.65 6.10 -51.93 -0.32 0.33 16 43 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 47 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.03 0.38 8.14 -51.92 -0.42 -0.05 16 50 H 0.09 1.35 5.88 -51.93 -0.31 1.05 16 LS Contribution 384.71 15.07 5.80 5.80 Total: -1.00 -31.03 384.71 -11.03 -42.06 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: -8.47 Total: 4.12 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: -0.03 Total: -8.24 kcal Atomic # 7 Polarization: -67.28 SS G_CDS: -0.74 Total: -68.02 kcal Atomic # 8 Polarization: -43.63 SS G_CDS: -1.91 Total: -45.54 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 54.40 SS G_CDS: -0.66 Total: 53.75 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.03 -11.03 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.022 kcal (2) G-P(sol) polarization free energy of solvation -31.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds