Wall clock time and date at job start Tue Mar 31 2020 17:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47006 * 2 1 4 4 C 1.50699 * 109.47217 * 120.00184 * 2 1 3 5 5 H 1.08001 * 120.00328 * 120.00051 * 4 2 1 6 6 C 1.37871 * 119.99961 * 300.00183 * 4 2 1 7 7 N 1.31512 * 120.00373 * 0.02562 * 6 4 2 8 8 Si 1.86812 * 120.00186 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.46626 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47126 * 119.99958 * 8 6 4 11 11 H 1.48498 * 109.46818 * 240.00222 * 8 6 4 12 12 N 1.46497 * 109.47188 * 240.00423 * 2 1 3 13 13 C 1.46496 * 119.99839 * 299.99768 * 12 2 1 14 14 S 1.65603 * 120.00091 * 120.00111 * 12 2 1 15 15 O 1.42095 * 106.40145 * 156.46077 * 14 12 2 16 16 O 1.42095 * 106.40055 * 23.53705 * 14 12 2 17 17 N 1.65603 * 107.21444 * 269.99650 * 14 12 2 18 18 C 1.46503 * 119.99684 * 65.00174 * 17 14 12 19 19 C 1.52999 * 109.46859 * 164.09102 * 18 17 14 20 20 H 1.08997 * 109.47433 * 185.51000 * 19 18 17 21 21 C 1.53004 * 109.47123 * 65.50866 * 19 18 17 22 22 N 1.46901 * 109.47306 * 305.51140 * 19 18 17 23 23 C 1.46846 * 110.99974 * 182.94183 * 22 19 18 24 24 C 1.53043 * 109.52364 * 185.84073 * 23 22 19 25 25 C 1.53129 * 109.27272 * 300.82031 * 24 23 22 26 26 C 1.53113 * 109.21574 * 57.62530 * 25 24 23 27 27 C 1.46842 * 110.99994 * 307.15059 * 22 19 18 28 28 H 1.09001 * 109.47006 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47336 * 299.99142 * 1 2 3 30 30 H 1.08997 * 109.47579 * 60.00053 * 1 2 3 31 31 H 0.97006 * 120.00708 * 180.02562 * 7 6 4 32 32 H 1.09002 * 109.47070 * 269.99715 * 13 12 2 33 33 H 1.09000 * 109.47470 * 29.99933 * 13 12 2 34 34 H 1.08998 * 109.47063 * 150.00083 * 13 12 2 35 35 H 0.96998 * 120.00111 * 244.99677 * 17 14 12 36 36 H 1.08999 * 109.47619 * 44.09330 * 18 17 14 37 37 H 1.09002 * 109.47138 * 284.09079 * 18 17 14 38 38 H 1.09000 * 109.46690 * 60.00534 * 21 19 18 39 39 H 1.08998 * 109.47103 * 179.97438 * 21 19 18 40 40 H 1.08990 * 109.47299 * 300.00000 * 21 19 18 41 41 H 1.08995 * 109.46603 * 65.82445 * 23 22 19 42 42 H 1.08997 * 109.45796 * 305.84594 * 23 22 19 43 43 H 1.08996 * 109.50456 * 180.88194 * 24 23 22 44 44 H 1.09001 * 109.50377 * 60.75775 * 24 23 22 45 45 H 1.09005 * 109.51436 * 177.55715 * 25 24 23 46 46 H 1.08998 * 109.52142 * 297.68362 * 25 24 23 47 47 H 1.09002 * 109.50654 * 62.30860 * 26 25 24 48 48 H 1.08992 * 109.50604 * 182.43614 * 26 25 24 49 49 H 1.09007 * 109.46264 * 294.17786 * 27 22 19 50 50 H 1.09000 * 109.46390 * 54.15069 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2395 2.4827 7 7 0.9427 0.8295 2.6034 8 14 2.3225 -1.1197 4.0080 9 1 3.1474 -2.2864 3.6037 10 1 3.1472 -0.1859 4.8161 11 1 1.1678 -1.5868 4.8164 12 7 2.0183 -0.6905 -1.1962 13 6 1.6644 -2.0930 -1.4281 14 16 2.9704 0.1144 -2.2862 15 8 3.7118 -0.8787 -2.9815 16 8 3.5793 1.1830 -1.5747 17 7 1.9606 0.8092 -3.3998 18 6 1.0290 1.8620 -2.9873 19 6 0.5118 2.5986 -4.2246 20 1 -0.1036 3.4429 -3.9140 21 6 -0.3265 1.6417 -5.0746 22 7 1.6497 3.0868 -5.0151 23 6 1.1907 3.8603 -6.1759 24 6 2.3903 4.2276 -7.0525 25 6 3.3853 5.0499 -6.2286 26 6 3.8107 4.2421 -4.9995 27 6 2.5697 3.8729 -4.1834 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 0.7086 1.1611 3.4845 32 1 2.4158 -2.7376 -0.9718 33 1 0.6904 -2.3002 -0.9847 34 1 1.6238 -2.2850 -2.5002 35 1 1.9860 0.5192 -4.3250 36 1 1.5431 2.5665 -2.3335 37 1 0.1902 1.4160 -2.4529 38 1 -1.1708 1.2795 -4.4880 39 1 -0.6953 2.1666 -5.9557 40 1 0.2889 0.7975 -5.3852 41 1 0.6984 4.7707 -5.8341 42 1 0.4871 3.2626 -6.7554 43 1 2.0512 4.8151 -7.9057 44 1 2.8749 3.3176 -7.4060 45 1 4.2612 5.2769 -6.8364 46 1 2.9132 5.9788 -5.9086 47 1 4.3183 3.3322 -5.3198 48 1 4.4857 4.8397 -4.3870 49 1 2.0708 4.7833 -3.8508 50 1 2.8677 3.2845 -3.3156 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800902233.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:19 Heat of formation + Delta-G solvation = -100.362737 kcal Electronic energy + Delta-G solvation = -29403.097673 eV Core-core repulsion = 25590.880408 eV Total energy + Delta-G solvation = -3812.217265 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.41029 -38.30299 -37.86066 -37.04368 -36.82691 -34.50880 -34.01749 -31.84487 -30.89376 -30.70456 -27.30957 -27.19534 -26.95902 -24.97715 -23.59173 -22.56042 -21.34216 -20.67869 -20.15153 -18.89852 -18.49288 -18.04315 -17.75934 -17.04157 -16.53216 -16.01963 -15.66765 -15.61371 -15.26094 -15.08061 -14.82267 -14.74449 -14.58542 -14.35253 -14.21765 -13.91109 -13.71072 -13.33036 -13.24874 -13.10691 -13.05030 -12.97016 -12.81955 -12.74309 -12.57887 -12.56597 -12.36219 -12.18264 -12.14722 -12.08769 -11.98788 -11.86012 -11.56755 -11.15508 -11.10098 -11.04841 -10.51189 -10.33772 -9.64489 -9.22096 -8.10880 -6.23502 -0.26293 1.40730 1.44053 1.54242 2.12893 2.44019 2.66938 2.93753 3.17481 3.48232 3.72453 3.91443 3.94558 4.08158 4.10096 4.16116 4.34495 4.40753 4.44787 4.52702 4.63487 4.66305 4.71238 4.72852 4.81706 4.83443 4.88172 4.95001 5.01070 5.06772 5.07313 5.09942 5.14885 5.15159 5.17988 5.22642 5.24290 5.33685 5.44018 5.51190 5.63732 5.75642 5.90928 6.14448 6.16147 6.25145 6.30973 6.36004 6.83970 7.45281 8.93076 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018489 B = 0.003519 C = 0.003498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.024653 B = 7955.877914 C = 8003.746528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.274 3.726 3 H 0.026 0.974 4 C -0.539 4.539 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.952 3.048 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.274 1.274 12 N -0.998 5.998 13 C 0.105 3.895 14 S 2.795 3.205 15 O -1.015 7.015 16 O -1.017 7.017 17 N -1.098 6.098 18 C 0.121 3.879 19 C 0.080 3.920 20 H 0.060 0.940 21 C -0.140 4.140 22 N -0.534 5.534 23 C 0.051 3.949 24 C -0.113 4.113 25 C -0.117 4.117 26 C -0.119 4.119 27 C 0.046 3.954 28 H 0.041 0.959 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.424 0.576 36 H 0.055 0.945 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.032 0.968 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.064 0.936 49 H 0.032 0.968 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.626 5.516 -19.212 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.199 1.199 12 N -0.840 5.840 13 C -0.040 4.040 14 S 2.804 3.196 15 O -0.999 6.999 16 O -1.000 7.000 17 N -0.863 5.863 18 C -0.005 4.005 19 C -0.030 4.030 20 H 0.077 0.923 21 C -0.197 4.197 22 N -0.260 5.260 23 C -0.076 4.076 24 C -0.151 4.151 25 C -0.154 4.154 26 C -0.157 4.157 27 C -0.082 4.082 28 H 0.060 0.940 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.262 0.738 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.050 0.950 42 H 0.110 0.890 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.077 0.923 48 H 0.083 0.917 49 H 0.050 0.950 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.501 5.334 -19.057 20.096 hybrid contribution -0.197 0.240 1.379 1.413 sum -3.698 5.574 -17.678 18.901 Atomic orbital electron populations 1.21961 0.96625 1.00295 1.00722 1.18398 0.92362 0.91259 0.81057 0.95636 1.21691 1.31510 1.12928 0.91692 0.92935 1.25577 0.95257 0.95721 1.01450 1.69963 1.37272 1.23587 1.24200 0.85608 0.78301 0.78600 0.79721 1.19697 1.21034 1.19911 1.57595 1.70060 1.21037 1.35318 1.21303 1.01556 0.80370 1.00803 1.01210 0.73580 0.72449 0.72351 1.93505 1.70639 1.60840 1.74934 1.93530 1.75334 1.57232 1.73938 1.55390 1.56590 1.50747 1.23533 1.21479 0.92731 0.89231 0.97100 1.21810 0.91372 0.97250 0.92558 0.92264 1.21845 0.99010 0.99019 0.99847 1.61920 1.15969 1.39195 1.08935 1.22239 0.97511 0.95974 0.91855 1.21580 0.95622 1.00176 0.97718 1.21561 0.99651 0.98075 0.96153 1.21587 0.96562 1.00214 0.97336 1.22158 0.94276 0.95666 0.96146 0.93958 0.91504 0.93896 0.92677 0.94440 0.90228 0.90270 0.73837 0.92673 0.90384 0.91152 0.90878 0.91810 0.94992 0.89015 0.89888 0.91697 0.91052 0.92093 0.92275 0.91712 0.94965 0.92194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.89 8.95 71.98 0.64 -5.24 16 2 C 0.27 13.24 2.62 44.24 0.12 13.36 16 3 H 0.03 1.41 6.91 -2.39 -0.02 1.39 16 4 C -0.54 -29.29 8.37 25.60 0.21 -29.08 16 5 H 0.05 2.88 7.65 -2.91 -0.02 2.86 16 6 C 0.02 1.08 5.30 84.65 0.45 1.53 16 7 N -0.91 -50.61 11.32 21.44 0.24 -50.37 16 8 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 9 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -1.00 -40.98 3.12 -520.47 -1.62 -42.61 16 13 C 0.11 3.66 9.53 127.77 1.22 4.88 16 14 S 2.80 110.49 6.09 -56.49 -0.34 110.15 16 15 O -1.02 -42.70 17.21 -128.00 -2.20 -44.90 16 16 O -1.02 -48.70 16.16 -128.00 -2.07 -50.77 16 17 N -1.10 -31.81 5.56 -187.48 -1.04 -32.85 16 18 C 0.12 3.29 5.11 86.38 0.44 3.73 16 19 C 0.08 1.63 2.36 44.92 0.11 1.74 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 C -0.14 -2.20 8.93 71.98 0.64 -1.56 16 22 N -0.53 -11.26 4.17 -871.10 -3.64 -14.90 16 23 C 0.05 0.83 5.27 86.33 0.45 1.28 16 24 C -0.11 -1.68 6.10 30.65 0.19 -1.50 16 25 C -0.12 -1.95 6.00 30.68 0.18 -1.77 16 26 C -0.12 -2.65 6.10 30.65 0.19 -2.46 16 27 C 0.05 1.14 5.06 86.33 0.44 1.57 16 28 H 0.04 1.71 6.66 -2.39 -0.02 1.70 16 29 H 0.07 3.26 6.07 -2.39 -0.01 3.25 16 30 H 0.04 1.53 6.21 -2.39 -0.01 1.52 16 31 H 0.26 13.92 8.31 -92.70 -0.77 13.15 16 32 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 33 H 0.08 2.61 6.43 -2.39 -0.02 2.59 16 34 H 0.08 2.24 7.79 -2.39 -0.02 2.22 16 35 H 0.42 10.49 7.35 -96.75 -0.71 9.78 16 36 H 0.05 1.77 6.13 -2.39 -0.01 1.76 16 37 H 0.08 2.06 6.21 -2.39 -0.01 2.05 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 0.92 6.35 -2.39 -0.02 0.90 16 40 H 0.06 1.04 6.92 -2.39 -0.02 1.03 16 41 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.09 1.22 6.10 -2.39 -0.01 1.20 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 47 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.06 1.87 5.88 -2.39 -0.01 1.86 16 Total: -1.00 -67.45 384.71 -3.15 -70.60 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: 0.22 Total: 23.63 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.28 Total: -13.51 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -6.06 Total: -140.72 kcal Atomic # 8 Polarization: -91.40 SS G_CDS: -4.27 Total: -95.67 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 110.49 SS G_CDS: -0.34 Total: 110.15 kcal Total: -67.45 -3.15 -70.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800902233.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.760 kcal (2) G-P(sol) polarization free energy of solvation -67.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds