Wall clock time and date at job start Tue Mar 31 2020 17:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47391 * 2 1 4 4 C 1.46503 * 119.99872 * 275.00137 * 3 2 1 5 5 C 1.53004 * 109.46867 * 275.17111 * 4 3 2 6 6 S 1.65602 * 120.00359 * 94.99288 * 3 2 1 7 7 O 1.42106 * 106.40098 * 336.27310 * 6 3 2 8 8 O 1.42095 * 106.40365 * 203.35364 * 6 3 2 9 9 N 1.65602 * 107.21633 * 89.81190 * 6 3 2 10 10 C 1.47078 * 120.88126 * 275.91386 * 9 6 3 11 11 C 1.53243 * 108.51944 * 231.16351 * 10 9 6 12 12 N 1.46905 * 109.33558 * 306.16616 * 11 10 9 13 13 C 1.46905 * 110.99513 * 187.25454 * 12 11 10 14 14 H 1.08994 * 109.46897 * 55.00552 * 13 12 11 15 15 C 1.53005 * 109.47197 * 295.00140 * 13 12 11 16 16 C 1.53001 * 109.46838 * 175.00277 * 13 12 11 17 17 C 1.50697 * 109.46817 * 294.99990 * 16 13 12 18 18 H 1.08000 * 120.00474 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99776 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46962 * 60.00125 * 21 19 17 23 23 H 1.48503 * 109.47436 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47381 * 300.00218 * 21 19 17 25 25 C 1.46899 * 111.26767 * 63.10863 * 12 11 10 26 26 C 1.47080 * 120.88060 * 95.88819 * 9 6 3 27 27 H 1.08998 * 109.46317 * 60.00518 * 1 2 3 28 28 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47166 * 300.00331 * 1 2 3 30 30 H 1.08995 * 109.47377 * 239.99177 * 2 1 3 31 31 H 1.09008 * 109.47020 * 119.99739 * 2 1 3 32 32 H 1.09001 * 109.47170 * 35.17073 * 4 3 2 33 33 H 1.08998 * 109.47544 * 155.17072 * 4 3 2 34 34 H 1.08992 * 109.47019 * 174.17159 * 5 4 3 35 35 H 1.08993 * 109.47053 * 294.17147 * 5 4 3 36 36 H 1.08997 * 109.46934 * 54.16812 * 5 4 3 37 37 H 1.09000 * 109.63158 * 111.44899 * 10 9 6 38 38 H 1.09001 * 109.63096 * 350.86893 * 10 9 6 39 39 H 1.09003 * 109.48978 * 186.20930 * 11 10 9 40 40 H 1.08998 * 109.51567 * 66.13966 * 11 10 9 41 41 H 1.08998 * 109.46826 * 300.00111 * 15 13 12 42 42 H 1.08998 * 109.46828 * 59.99821 * 15 13 12 43 43 H 1.08994 * 109.46772 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47001 * 54.99873 * 16 13 12 45 45 H 1.08995 * 109.47127 * 174.99994 * 16 13 12 46 46 H 0.97006 * 119.99704 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.49412 * 56.85265 * 25 12 11 48 48 H 1.08998 * 109.49113 * 176.92753 * 25 12 11 49 49 H 1.09004 * 109.62437 * 248.54787 * 26 9 6 50 50 H 1.08996 * 109.62706 * 8.93254 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.5135 1.7804 -1.8939 6 16 2.4122 2.1203 1.4287 7 8 1.6833 1.4445 2.4443 8 8 2.3101 3.5187 1.1985 9 7 4.0131 1.8094 1.7164 10 6 4.4346 0.5574 2.3630 11 6 5.3581 0.9024 3.5362 12 7 6.4551 1.7543 3.0576 13 6 7.4555 1.9663 4.1123 14 1 7.8033 1.0019 4.4822 15 6 6.8257 2.7564 5.2613 16 6 8.6389 2.7509 3.5423 17 6 9.3341 1.9205 2.4944 18 1 8.9683 0.9321 2.2582 19 6 10.4374 2.4225 1.8371 20 7 10.8826 3.6261 2.1244 21 14 11.2996 1.3929 0.5387 22 1 10.3457 1.0737 -0.5537 23 1 12.4482 2.1544 -0.0146 24 1 11.7901 0.1324 1.1517 25 6 5.9504 3.0353 2.5455 26 6 5.0512 2.7777 1.3317 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3600 1.8119 -1.9442 33 1 2.0954 3.1803 -1.0753 34 1 3.5757 2.2382 -2.8811 35 1 4.3117 2.1697 -1.2620 36 1 3.6185 0.6996 -1.9873 37 1 4.9709 -0.0630 1.6450 38 1 3.5591 0.0226 2.7312 39 1 5.7678 -0.0152 3.9586 40 1 4.7920 1.4339 4.3011 41 1 6.4779 3.7208 4.8912 42 1 5.9826 2.1975 5.6672 43 1 7.5681 2.9140 6.0435 44 1 8.2786 3.6761 3.0926 45 1 9.3394 2.9852 4.3439 46 1 11.6590 3.9792 1.6622 47 1 5.3757 3.5372 3.3239 48 1 6.7897 3.6646 2.2495 49 1 5.6468 2.3707 0.5146 50 1 4.5831 3.7097 1.0148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839460710.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:13 Heat of formation + Delta-G solvation = -68.777239 kcal Electronic energy + Delta-G solvation = -29336.721928 eV Core-core repulsion = 25525.874314 eV Total energy + Delta-G solvation = -3810.847615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -38.94938 -37.39348 -37.33646 -35.86320 -35.50256 -32.67924 -32.16796 -30.94389 -30.34693 -28.98473 -27.34451 -25.63437 -23.97635 -23.65518 -22.96644 -22.32485 -20.86657 -19.29957 -18.54988 -17.59516 -17.52923 -16.54832 -16.16656 -15.54399 -15.16414 -14.71171 -14.61084 -14.43206 -14.25035 -14.14212 -14.00558 -13.71419 -13.43629 -13.11157 -13.08060 -12.56927 -12.34953 -12.31982 -12.14041 -12.12714 -11.99801 -11.92688 -11.83819 -11.67665 -11.53919 -11.27809 -11.20493 -11.09958 -10.96250 -10.78367 -10.63044 -10.40497 -10.32250 -9.93660 -9.35869 -9.25030 -9.02714 -8.90366 -8.27937 -7.50968 -5.91265 -3.89433 0.51554 2.76499 3.38021 3.40666 3.42554 3.45266 4.22681 4.43608 4.47808 4.54065 4.77781 4.83903 4.91554 5.10729 5.13113 5.17226 5.30532 5.32251 5.35506 5.45585 5.48327 5.53782 5.60189 5.62632 5.66486 5.72018 5.77322 5.89053 5.93482 5.94682 5.99032 6.02722 6.05956 6.08617 6.22572 6.31383 6.35419 6.41132 6.55074 6.65976 6.80450 6.94551 7.50718 7.64540 7.86488 7.98238 8.09891 8.54927 9.16476 9.72388 11.20542 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.003752 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.962449 B = 7461.122320 C = 8354.825340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.122 3.878 3 N -1.007 6.007 4 C 0.112 3.888 5 C -0.176 4.176 6 S 2.781 3.219 7 O -0.978 6.978 8 O -0.978 6.978 9 N -1.004 6.004 10 C 0.128 3.872 11 C 0.041 3.959 12 N -0.507 5.507 13 C 0.087 3.913 14 H 0.071 0.929 15 C -0.185 4.185 16 C 0.029 3.971 17 C -0.492 4.492 18 H 0.060 0.940 19 C 0.051 3.949 20 N -0.903 5.903 21 Si 0.890 3.110 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.045 3.955 26 C 0.124 3.876 27 H 0.057 0.943 28 H 0.066 0.934 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.032 0.968 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.056 0.944 44 H 0.020 0.980 45 H 0.019 0.981 46 H 0.258 0.742 47 H 0.028 0.972 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.097 -6.230 -5.183 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.003 4.003 3 N -0.846 5.846 4 C -0.013 4.013 5 C -0.235 4.235 6 S 2.791 3.209 7 O -0.962 6.962 8 O -0.962 6.962 9 N -0.845 5.845 10 C 0.002 3.998 11 C -0.089 4.089 12 N -0.231 5.231 13 C -0.021 4.021 14 H 0.090 0.910 15 C -0.244 4.244 16 C -0.008 4.008 17 C -0.530 4.530 18 H 0.078 0.922 19 C -0.148 4.148 20 N -0.544 5.544 21 Si 0.719 3.281 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.085 4.085 26 C -0.001 4.001 27 H 0.076 0.924 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.050 0.950 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.038 0.962 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.046 0.954 48 H 0.123 0.877 49 H 0.096 0.904 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.339 -5.849 -5.097 20.837 hybrid contribution 0.474 -0.358 -0.341 0.685 sum -18.865 -6.207 -5.438 20.591 Atomic orbital electron populations 1.22212 0.95985 1.02385 1.02590 1.21173 0.94491 0.81564 1.03086 1.58097 1.79858 1.23721 1.22958 1.21330 0.98051 0.97004 0.84905 1.22264 0.97471 1.02443 1.01332 1.02009 0.72818 0.73140 0.72936 1.93585 1.70516 1.76196 1.55905 1.93571 1.86197 1.30541 1.85859 1.58078 1.24426 1.28281 1.73715 1.21520 0.98373 0.84699 0.95173 1.22386 0.92875 0.98488 0.95140 1.62013 1.11276 1.14377 1.35455 1.21937 0.92928 0.99166 0.88062 0.91046 1.22535 1.00525 1.00900 1.00462 1.19238 0.90632 0.95045 0.95931 1.21126 1.10586 1.01816 1.19492 0.92155 1.25004 0.97450 0.95004 0.97349 1.69953 1.25226 1.16353 1.42860 0.86696 0.78980 0.80239 0.82198 1.20447 1.21709 1.20553 1.22433 0.98308 0.92436 0.95315 1.21652 0.88825 0.91240 0.98406 0.92370 0.91475 0.91962 0.90430 0.90323 0.90396 0.89171 0.91438 0.91897 0.92119 0.90681 0.89921 0.90130 0.94992 0.92966 0.94057 0.92492 0.96151 0.96305 0.93234 0.95372 0.87748 0.90377 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.97 16 2 C 0.12 1.02 6.07 -4.04 -0.02 0.99 16 3 N -1.01 -10.28 2.84 -114.37 -0.32 -10.61 16 4 C 0.11 0.99 6.40 -4.04 -0.03 0.97 16 5 C -0.18 -1.51 10.24 37.16 0.38 -1.13 16 6 S 2.78 37.70 6.10 -107.50 -0.66 37.05 16 7 O -0.98 -15.13 15.89 -57.17 -0.91 -16.04 16 8 O -0.98 -15.67 15.17 -57.17 -0.87 -16.54 16 9 N -1.00 -13.61 3.39 -113.24 -0.38 -14.00 16 10 C 0.13 1.65 6.65 -3.60 -0.02 1.62 16 11 C 0.04 0.61 5.14 -3.70 -0.02 0.59 16 12 N -0.51 -9.12 4.33 -226.33 -0.98 -10.10 16 13 C 0.09 1.70 2.30 -67.71 -0.16 1.55 16 14 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 15 C -0.19 -3.17 8.51 37.16 0.32 -2.85 16 16 C 0.03 0.69 4.27 -27.88 -0.12 0.58 16 17 C -0.49 -13.23 8.84 -34.44 -0.30 -13.53 16 18 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 19 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 20 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 25 C 0.04 0.78 4.77 -3.70 -0.02 0.76 16 26 C 0.12 1.83 6.23 -3.60 -0.02 1.81 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.51 8.02 -51.93 -0.42 0.09 16 31 H 0.08 0.66 7.62 -51.92 -0.40 0.26 16 32 H 0.08 0.53 8.11 -51.93 -0.42 0.11 16 33 H 0.09 0.88 6.91 -51.93 -0.36 0.52 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.63 7.14 -51.93 -0.37 0.26 16 36 H 0.06 0.50 8.06 -51.93 -0.42 0.08 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.94 7.08 -51.93 -0.37 0.57 16 39 H 0.08 1.11 8.05 -51.93 -0.42 0.69 16 40 H 0.03 0.49 6.81 -51.93 -0.35 0.13 16 41 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 42 H 0.04 0.64 6.69 -51.93 -0.35 0.29 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.02 0.52 6.03 -51.93 -0.31 0.21 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.03 0.48 6.71 -51.93 -0.35 0.13 16 48 H 0.10 2.05 5.87 -51.93 -0.30 1.75 16 49 H 0.08 1.15 7.62 -51.93 -0.40 0.76 16 50 H 0.09 1.25 6.82 -51.93 -0.35 0.90 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -32.24 392.14 -11.07 -43.31 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -8.84 Total: -1.33 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 0.27 Total: -8.29 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.95 Total: -60.51 kcal Atomic # 8 Polarization: -30.80 SS G_CDS: -1.78 Total: -32.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 37.70 SS G_CDS: -0.66 Total: 37.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.24 -11.07 -43.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839460710.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.471 kcal (2) G-P(sol) polarization free energy of solvation -32.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds