Wall clock time and date at job start Tue Mar 31 2020 17:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46498 * 109.47391 * 2 1 4 4 C 1.46503 * 119.99872 * 275.00137 * 3 2 1 5 5 C 1.53004 * 109.46867 * 275.17111 * 4 3 2 6 6 S 1.65602 * 120.00359 * 94.99288 * 3 2 1 7 7 O 1.42106 * 106.40098 * 336.27310 * 6 3 2 8 8 O 1.42095 * 106.40365 * 203.35364 * 6 3 2 9 9 N 1.65602 * 107.21633 * 89.81190 * 6 3 2 10 10 C 1.47078 * 120.88126 * 275.91386 * 9 6 3 11 11 C 1.53243 * 108.51944 * 231.16351 * 10 9 6 12 12 N 1.46905 * 109.33558 * 306.16616 * 11 10 9 13 13 C 1.46905 * 110.99513 * 187.25454 * 12 11 10 14 14 H 1.08994 * 109.46897 * 55.00552 * 13 12 11 15 15 C 1.53005 * 109.47197 * 295.00140 * 13 12 11 16 16 C 1.53001 * 109.46838 * 175.00277 * 13 12 11 17 17 C 1.50697 * 109.46817 * 294.99990 * 16 13 12 18 18 H 1.08000 * 120.00474 * 0.02562 * 17 16 13 19 19 C 1.37885 * 119.99776 * 180.02562 * 17 16 13 20 20 N 1.31514 * 119.99710 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00187 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46962 * 60.00125 * 21 19 17 23 23 H 1.48503 * 109.47436 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.47381 * 300.00218 * 21 19 17 25 25 C 1.46899 * 111.26767 * 63.10863 * 12 11 10 26 26 C 1.47080 * 120.88060 * 95.88819 * 9 6 3 27 27 H 1.08998 * 109.46317 * 60.00518 * 1 2 3 28 28 H 1.09001 * 109.47077 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47166 * 300.00331 * 1 2 3 30 30 H 1.08995 * 109.47377 * 239.99177 * 2 1 3 31 31 H 1.09008 * 109.47020 * 119.99739 * 2 1 3 32 32 H 1.09001 * 109.47170 * 35.17073 * 4 3 2 33 33 H 1.08998 * 109.47544 * 155.17072 * 4 3 2 34 34 H 1.08992 * 109.47019 * 174.17159 * 5 4 3 35 35 H 1.08993 * 109.47053 * 294.17147 * 5 4 3 36 36 H 1.08997 * 109.46934 * 54.16812 * 5 4 3 37 37 H 1.09000 * 109.63158 * 111.44899 * 10 9 6 38 38 H 1.09001 * 109.63096 * 350.86893 * 10 9 6 39 39 H 1.09003 * 109.48978 * 186.20930 * 11 10 9 40 40 H 1.08998 * 109.51567 * 66.13966 * 11 10 9 41 41 H 1.08998 * 109.46826 * 300.00111 * 15 13 12 42 42 H 1.08998 * 109.46828 * 59.99821 * 15 13 12 43 43 H 1.08994 * 109.46772 * 180.02562 * 15 13 12 44 44 H 1.09004 * 109.47001 * 54.99873 * 16 13 12 45 45 H 1.08995 * 109.47127 * 174.99994 * 16 13 12 46 46 H 0.97006 * 119.99704 * 179.97438 * 20 19 17 47 47 H 1.09003 * 109.49412 * 56.85265 * 25 12 11 48 48 H 1.08998 * 109.49113 * 176.92753 * 25 12 11 49 49 H 1.09004 * 109.62437 * 248.54787 * 26 9 6 50 50 H 1.08996 * 109.62706 * 8.93254 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1584 2.1086 -1.2639 5 6 3.5135 1.7804 -1.8939 6 16 2.4122 2.1203 1.4287 7 8 1.6833 1.4445 2.4443 8 8 2.3101 3.5187 1.1985 9 7 4.0131 1.8094 1.7164 10 6 4.4346 0.5574 2.3630 11 6 5.3581 0.9024 3.5362 12 7 6.4551 1.7543 3.0576 13 6 7.4555 1.9663 4.1123 14 1 7.8033 1.0019 4.4822 15 6 6.8257 2.7564 5.2613 16 6 8.6389 2.7509 3.5423 17 6 9.3341 1.9205 2.4944 18 1 8.9683 0.9321 2.2582 19 6 10.4374 2.4225 1.8371 20 7 10.8826 3.6261 2.1244 21 14 11.2996 1.3929 0.5387 22 1 10.3457 1.0737 -0.5537 23 1 12.4482 2.1544 -0.0146 24 1 11.7901 0.1324 1.1517 25 6 5.9504 3.0353 2.5455 26 6 5.0512 2.7777 1.3317 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 1.3600 1.8119 -1.9442 33 1 2.0954 3.1803 -1.0753 34 1 3.5757 2.2382 -2.8811 35 1 4.3117 2.1697 -1.2620 36 1 3.6185 0.6996 -1.9873 37 1 4.9709 -0.0630 1.6450 38 1 3.5591 0.0226 2.7312 39 1 5.7678 -0.0152 3.9586 40 1 4.7920 1.4339 4.3011 41 1 6.4779 3.7208 4.8912 42 1 5.9826 2.1975 5.6672 43 1 7.5681 2.9140 6.0435 44 1 8.2786 3.6761 3.0926 45 1 9.3394 2.9852 4.3439 46 1 11.6590 3.9792 1.6622 47 1 5.3757 3.5372 3.3239 48 1 6.7897 3.6646 2.2495 49 1 5.6468 2.3707 0.5146 50 1 4.5831 3.7097 1.0148 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839460710.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:12 Heat of formation + Delta-G solvation = -91.072536 kcal Electronic energy + Delta-G solvation = -29337.688725 eV Core-core repulsion = 25525.874314 eV Total energy + Delta-G solvation = -3811.814411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.29689 -38.53395 -38.07717 -37.02687 -36.88028 -34.66709 -32.83341 -32.22838 -31.83162 -29.70243 -29.18710 -26.92636 -25.21949 -24.67145 -24.53694 -23.08634 -22.21750 -20.66308 -19.58237 -18.69284 -18.57865 -18.29452 -17.46357 -16.76955 -16.53824 -16.30399 -15.83804 -15.63864 -15.48096 -15.10796 -14.83260 -14.78603 -14.58861 -14.35189 -13.96008 -13.90996 -13.74094 -13.56965 -13.51776 -13.28210 -13.08746 -13.00065 -12.90789 -12.87260 -12.69879 -12.63169 -12.55162 -12.41892 -12.32650 -11.95589 -11.92611 -11.87153 -11.66291 -11.51972 -11.06840 -10.97254 -10.42689 -10.19356 -10.03195 -8.92387 -8.05536 -6.10244 -0.52942 1.46054 1.47906 1.55339 1.79056 2.39336 2.51137 3.08373 3.18390 3.31176 3.62402 3.77378 4.08829 4.16016 4.20652 4.28038 4.29107 4.31021 4.39142 4.43325 4.47666 4.48155 4.54813 4.57403 4.58676 4.67455 4.76978 4.79780 4.86431 4.97334 5.00787 5.03302 5.05738 5.09366 5.11577 5.20269 5.28247 5.33841 5.35072 5.41707 5.49665 5.54859 5.73927 5.77223 5.93927 6.32758 6.41492 6.53354 7.03692 7.55724 9.06324 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015247 B = 0.003752 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.962449 B = 7461.122320 C = 8354.825340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.114 3.886 3 N -1.000 6.000 4 C 0.109 3.891 5 C -0.174 4.174 6 S 2.792 3.208 7 O -0.998 6.998 8 O -1.007 7.007 9 N -1.004 6.004 10 C 0.129 3.871 11 C 0.039 3.961 12 N -0.519 5.519 13 C 0.095 3.905 14 H 0.072 0.928 15 C -0.176 4.176 16 C 0.035 3.965 17 C -0.496 4.496 18 H 0.062 0.938 19 C -0.004 4.004 20 N -0.941 5.941 21 Si 0.956 3.044 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.272 1.272 25 C 0.047 3.953 26 C 0.134 3.866 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.039 0.961 30 H 0.103 0.897 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.043 0.957 36 H 0.068 0.932 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.030 0.970 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.057 0.943 44 H 0.000 1.000 45 H -0.011 1.011 46 H 0.257 0.743 47 H 0.027 0.973 48 H 0.073 0.927 49 H 0.079 0.921 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.530 -8.574 -6.587 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.010 4.010 3 N -0.841 5.841 4 C -0.016 4.016 5 C -0.233 4.233 6 S 2.803 3.197 7 O -0.982 6.982 8 O -0.991 6.991 9 N -0.844 5.844 10 C 0.004 3.996 11 C -0.091 4.091 12 N -0.243 5.243 13 C -0.013 4.013 14 H 0.090 0.910 15 C -0.235 4.235 16 C -0.002 4.002 17 C -0.535 4.535 18 H 0.080 0.920 19 C -0.200 4.200 20 N -0.584 5.584 21 Si 0.782 3.218 22 H -0.194 1.194 23 H -0.218 1.218 24 H -0.197 1.197 25 C -0.083 4.083 26 C 0.008 3.992 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.121 0.879 31 H 0.097 0.903 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.104 0.896 38 H 0.121 0.879 39 H 0.113 0.887 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.018 0.982 45 H 0.008 0.992 46 H 0.066 0.934 47 H 0.045 0.955 48 H 0.091 0.909 49 H 0.097 0.903 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.790 -8.212 -6.489 23.276 hybrid contribution 0.868 0.361 0.091 0.945 sum -19.922 -7.850 -6.398 22.348 Atomic orbital electron populations 1.22225 0.95625 1.03423 1.01908 1.21442 0.94831 0.80350 1.04383 1.57877 1.79423 1.24640 1.22196 1.21484 0.99235 0.96298 0.84538 1.22250 0.96524 1.02950 1.01576 1.01496 0.72510 0.72445 0.73299 1.93553 1.70890 1.76367 1.57367 1.93529 1.86519 1.32657 1.86386 1.58026 1.24035 1.28267 1.74108 1.21615 0.98835 0.84491 0.94642 1.22516 0.92177 0.98281 0.96106 1.61939 1.12382 1.14822 1.35185 1.21651 0.92123 0.98515 0.89048 0.91024 1.22411 1.01104 1.00467 0.99504 1.19088 0.91872 0.94733 0.94545 1.21446 1.10522 1.01890 1.19596 0.91999 1.25832 0.98432 0.96075 0.99624 1.70096 1.25828 1.18155 1.44277 0.85641 0.77794 0.78679 0.79674 1.19413 1.21812 1.19684 1.22334 0.97562 0.92006 0.96373 1.21455 0.88763 0.91943 0.97018 0.91486 0.89623 0.94202 0.87870 0.90283 0.87712 0.90435 0.90136 0.93739 0.91332 0.89577 0.87937 0.88675 0.95133 0.93642 0.91809 0.92384 0.98209 0.99236 0.93392 0.95477 0.90878 0.90288 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 71.98 0.74 -1.53 16 2 C 0.11 1.57 6.07 86.38 0.52 2.09 16 3 N -1.00 -18.32 2.84 -515.76 -1.47 -19.78 16 4 C 0.11 1.69 6.40 86.38 0.55 2.24 16 5 C -0.17 -2.60 10.24 71.98 0.74 -1.86 16 6 S 2.79 72.56 6.10 -56.49 -0.34 72.22 16 7 O -1.00 -29.58 15.89 -128.00 -2.03 -31.62 16 8 O -1.01 -31.99 15.17 -128.00 -1.94 -33.94 16 9 N -1.00 -25.96 3.39 -512.17 -1.73 -27.69 16 10 C 0.13 3.04 6.65 86.35 0.57 3.61 16 11 C 0.04 1.08 5.14 86.38 0.44 1.52 16 12 N -0.52 -18.43 4.33 -869.98 -3.77 -22.19 16 13 C 0.09 3.73 2.30 44.92 0.10 3.83 16 14 H 0.07 2.81 8.06 -2.39 -0.02 2.79 16 15 C -0.18 -5.98 8.51 71.98 0.61 -5.36 16 16 C 0.03 1.75 4.27 29.85 0.13 1.88 16 17 C -0.50 -27.03 8.84 25.60 0.23 -26.81 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 -0.21 5.46 84.66 0.46 0.25 16 20 N -0.94 -56.72 13.29 21.45 0.28 -56.43 16 21 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 C 0.05 1.66 4.77 86.38 0.41 2.07 16 26 C 0.13 3.94 6.23 86.35 0.54 4.48 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.93 8.02 -2.39 -0.02 0.91 16 31 H 0.08 1.09 7.62 -2.38 -0.02 1.07 16 32 H 0.10 1.09 8.11 -2.39 -0.02 1.07 16 33 H 0.08 1.42 6.91 -2.39 -0.02 1.41 16 34 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.04 0.83 7.14 -2.39 -0.02 0.81 16 36 H 0.07 0.92 8.06 -2.39 -0.02 0.90 16 37 H 0.09 1.86 8.14 -2.39 -0.02 1.85 16 38 H 0.10 2.04 7.08 -2.39 -0.02 2.02 16 39 H 0.10 2.38 8.05 -2.39 -0.02 2.37 16 40 H 0.03 0.87 6.81 -2.39 -0.02 0.86 16 41 H 0.04 1.59 6.56 -2.39 -0.02 1.57 16 42 H 0.06 1.87 6.69 -2.39 -0.02 1.86 16 43 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.00 -0.01 6.03 -2.39 -0.01 -0.03 16 45 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 46 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 47 H 0.03 0.95 6.71 -2.39 -0.02 0.93 16 48 H 0.07 3.03 5.87 -2.39 -0.01 3.02 16 49 H 0.08 2.31 7.62 -2.38 -0.02 2.29 16 50 H 0.09 2.64 6.82 -2.39 -0.02 2.62 16 Total: -1.00 -70.10 392.14 -2.03 -72.13 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.90 Total: 14.79 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: 6.05 Total: -13.59 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.68 Total: -126.10 kcal Atomic # 8 Polarization: -61.58 SS G_CDS: -3.98 Total: -65.55 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Atomic # 16 Polarization: 72.56 SS G_CDS: -0.34 Total: 72.22 kcal Total: -70.10 -2.03 -72.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839460710.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.943 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds