Wall clock time and date at job start Tue Mar 31 2020 18:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46905 * 240.00541 * 3 2 1 5 5 H 1.48501 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00348 * 3 2 1 7 7 C 1.37885 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00024 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97957 * 124.99862 * 10 9 7 12 12 C 1.35243 * 107.85904 * 179.70697 * 11 10 9 13 13 C 1.40393 * 107.86777 * 0.43303 * 12 11 10 14 14 N 1.40200 * 125.97066 * 179.82586 * 13 12 11 15 15 C 1.34775 * 120.00254 * 359.71380 * 14 13 12 16 16 O 1.21595 * 119.99731 * 5.31332 * 15 14 13 17 17 N 1.34777 * 120.00121 * 185.31060 * 15 14 13 18 18 C 1.48195 * 118.39283 * 357.24344 * 17 15 14 19 19 C 1.54399 * 110.82113 * 138.59075 * 18 17 15 20 20 N 1.44683 * 109.31473 * 320.82496 * 19 18 17 21 21 C 1.45898 * 110.12181 * 96.03249 * 20 19 18 22 22 C 1.47971 * 114.46115 * 269.28851 * 21 20 19 23 23 C 1.44454 * 118.39160 * 177.23862 * 17 15 14 24 24 C 1.53232 * 114.99963 * 137.71322 * 23 17 15 25 25 C 1.53872 * 86.97634 * 268.62019 * 24 23 17 26 26 C 1.53553 * 114.87387 * 38.18134 * 23 17 15 27 27 N 1.31205 * 108.05643 * 359.56304 * 13 12 11 28 28 H 0.96991 * 120.00338 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47160 * 60.00073 * 9 7 2 30 30 H 1.09001 * 109.47500 * 300.00043 * 9 7 2 31 31 H 1.07999 * 126.06819 * 0.02562 * 11 10 9 32 32 H 1.08008 * 126.06609 * 180.25367 * 12 11 10 33 33 H 0.96998 * 119.99777 * 179.71448 * 14 13 12 34 34 H 1.09007 * 109.21096 * 18.24374 * 18 17 15 35 35 H 1.09002 * 109.17363 * 258.90829 * 18 17 15 36 36 H 1.08995 * 109.49759 * 200.87588 * 19 18 17 37 37 H 1.08999 * 109.52377 * 80.79273 * 19 18 17 38 38 H 1.00900 * 111.00487 * 219.35755 * 20 19 18 39 39 H 1.08997 * 108.49037 * 148.00199 * 21 20 19 40 40 H 1.09002 * 108.48151 * 30.57168 * 21 20 19 41 41 H 1.08999 * 109.74324 * 301.34704 * 22 21 20 42 42 H 1.08999 * 109.78064 * 180.64654 * 22 21 20 43 43 H 1.08996 * 113.63259 * 154.09709 * 24 23 17 44 44 H 1.09004 * 113.71116 * 23.14564 * 24 23 17 45 45 H 1.09001 * 113.60228 * 89.61721 * 25 24 23 46 46 H 1.09008 * 113.59599 * 220.39214 * 25 24 23 47 47 H 1.09004 * 113.71239 * 337.01273 * 26 23 17 48 48 H 1.09001 * 113.63306 * 205.96858 * 26 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2567 -5.4461 0.5458 13 6 3.8684 -4.9151 -0.6008 14 7 4.9643 -5.4662 -1.2797 15 6 5.5284 -6.6066 -0.8350 16 8 5.0292 -7.2091 0.0957 17 7 6.6459 -7.0791 -1.4220 18 6 7.1891 -6.3505 -2.5925 19 6 8.7287 -6.2622 -2.5179 20 7 9.1287 -6.0255 -1.1478 21 6 9.4723 -7.2868 -0.5001 22 6 8.3416 -7.9522 0.1841 23 6 7.2555 -8.2709 -0.8791 24 6 7.7412 -9.2826 -1.9224 25 6 6.3545 -9.9402 -1.8110 26 6 6.2651 -9.3406 -0.3967 27 7 3.2317 -3.8159 -0.9293 28 1 -0.4850 0.8399 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6248 -2.5572 0.8897 31 1 1.5777 -4.7525 1.7356 32 1 3.5468 -6.3504 1.0603 33 1 5.3165 -5.0268 -2.0695 34 1 6.7727 -5.3433 -2.6129 35 1 6.9038 -6.8749 -3.5045 36 1 9.0769 -5.4419 -3.1455 37 1 9.1646 -7.1981 -2.8676 38 1 9.8984 -5.3746 -1.1031 39 1 10.2562 -7.0967 0.2330 40 1 9.8677 -7.9664 -1.2551 41 1 7.9292 -7.2887 0.9442 42 1 8.6842 -8.8768 0.6489 43 1 8.5550 -9.9166 -1.5705 44 1 7.9390 -8.8432 -2.9002 45 1 5.6206 -9.5314 -2.5055 46 1 6.3862 -11.0298 -1.8218 47 1 5.2792 -8.9461 -0.1508 48 1 6.6681 -9.9907 0.3799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883542241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:09 Heat of formation + Delta-G solvation = 115.901761 kcal Electronic energy + Delta-G solvation = -29679.646981 eV Core-core repulsion = 25773.656449 eV Total energy + Delta-G solvation = -3905.990532 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43947 -40.25622 -38.46386 -36.99820 -34.74171 -34.13602 -33.10610 -31.77519 -30.71527 -29.18272 -28.05321 -26.59021 -25.86397 -25.11708 -23.25546 -22.44670 -21.46698 -21.21410 -20.49265 -19.43646 -18.55565 -17.72375 -16.81879 -16.55570 -16.42304 -16.16800 -15.57396 -15.19481 -15.15272 -14.75384 -14.56976 -14.37886 -14.07677 -13.73160 -13.29538 -13.10023 -12.94527 -12.70276 -12.42692 -12.27084 -12.15821 -11.87435 -11.84769 -11.64054 -11.55045 -11.23652 -11.09902 -10.92650 -10.81007 -10.55673 -10.43082 -10.24450 -10.19955 -9.81766 -9.43011 -9.09496 -8.78189 -8.59499 -8.53661 -7.98860 -7.29735 -6.19587 -4.24403 2.44172 2.77044 3.21925 3.28644 3.31506 3.35777 3.43356 3.86813 3.94841 4.13939 4.34562 4.38756 4.50413 4.52396 4.61138 4.64446 4.82077 4.90638 5.13640 5.15265 5.15666 5.28019 5.36270 5.40591 5.49743 5.54650 5.59139 5.60763 5.71481 5.74183 5.90209 5.98158 6.05643 6.25826 6.28357 6.33757 6.63851 6.72748 6.75841 6.90079 6.96887 7.04340 7.08855 7.16564 7.62119 7.74805 7.88459 8.04826 8.15302 8.74712 8.76878 8.87342 9.40865 10.89036 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.002786 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.098794 B =10047.050013 C =10935.856043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.062 3.938 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.068 0.932 9 C 0.260 3.740 10 N -0.322 5.322 11 C 0.049 3.951 12 C -0.285 4.285 13 C 0.278 3.722 14 N -0.645 5.645 15 C 0.718 3.282 16 O -0.561 6.561 17 N -0.585 5.585 18 C 0.114 3.886 19 C 0.046 3.954 20 N -0.679 5.679 21 C 0.064 3.936 22 C -0.121 4.121 23 C 0.179 3.821 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.157 4.157 27 N -0.311 5.311 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.056 0.944 31 H 0.166 0.834 32 H 0.160 0.840 33 H 0.404 0.596 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.050 0.950 38 H 0.347 0.653 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.122 0.878 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.005 -18.561 -4.746 26.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.142 3.858 10 N -0.104 5.104 11 C -0.100 4.100 12 C -0.317 4.317 13 C 0.024 3.976 14 N -0.297 5.297 15 C 0.420 3.580 16 O -0.438 6.438 17 N -0.321 5.321 18 C -0.010 4.010 19 C -0.085 4.085 20 N -0.309 5.309 21 C -0.065 4.065 22 C -0.161 4.161 23 C 0.092 3.908 24 C -0.179 4.179 25 C -0.178 4.178 26 C -0.194 4.194 27 N -0.142 5.142 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.183 0.817 32 H 0.178 0.822 33 H 0.241 0.759 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.068 0.932 38 H 0.165 0.835 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.083 0.917 47 H 0.140 0.860 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 17.720 -17.792 -4.668 25.541 hybrid contribution 1.579 0.500 -0.338 1.691 sum 19.299 -17.292 -5.006 26.392 Atomic orbital electron populations 1.69905 1.06035 1.27663 1.49881 1.24942 0.94967 0.99497 0.94677 0.86395 0.79378 0.81851 0.78914 1.19964 1.21089 1.20045 1.21239 0.93981 0.89446 1.51902 0.91360 1.19695 0.85629 0.81326 0.99139 1.49018 1.23350 1.19778 1.18247 1.22535 1.00460 0.90263 0.96788 1.21496 1.02082 1.06243 1.01844 1.18813 0.90644 0.93890 0.94245 1.41730 1.31405 1.25120 1.31422 1.15601 0.80200 0.80170 0.82046 1.90687 1.64508 1.57927 1.30639 1.46172 1.25886 1.27341 1.32695 1.22197 0.94615 0.96501 0.87647 1.22279 0.95133 1.01067 0.90034 1.59062 1.43456 1.12883 1.15535 1.20839 0.97201 0.90336 0.98094 1.21537 0.95766 1.00480 0.98283 1.20815 0.93555 0.83151 0.93292 1.23188 0.97956 0.97776 0.98999 1.22854 0.96592 0.99748 0.98601 1.23704 1.04068 0.95638 0.95973 1.77309 1.03899 1.16553 1.16413 0.92323 0.93848 0.92641 0.81684 0.82231 0.75883 0.90113 0.91574 0.90409 0.93225 0.83477 0.92348 0.94722 0.90606 0.90505 0.89361 0.91458 0.90621 0.91736 0.86022 0.90018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.53 -14.92 9.24 -34.44 -0.32 -15.24 16 8 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 9 C 0.26 6.74 6.26 -5.20 -0.03 6.71 16 10 N -0.32 -7.70 3.67 -62.57 -0.23 -7.93 16 11 C 0.05 1.02 11.44 -17.24 -0.20 0.83 16 12 C -0.29 -5.87 9.61 -39.84 -0.38 -6.26 16 13 C 0.28 5.82 8.11 -154.36 -1.25 4.57 16 14 N -0.64 -10.79 5.30 -15.51 -0.08 -10.88 16 15 C 0.72 11.28 8.00 -86.92 -0.70 10.58 16 16 O -0.56 -10.09 10.22 5.28 0.05 -10.04 16 17 N -0.59 -6.82 2.49 -161.85 -0.40 -7.22 16 18 C 0.11 1.01 5.64 -2.38 -0.01 1.00 16 19 C 0.05 0.32 6.07 -4.28 -0.03 0.29 16 20 N -0.68 -5.64 6.27 -118.08 -0.74 -6.38 16 21 C 0.06 0.50 5.61 -6.81 -0.04 0.47 16 22 C -0.12 -1.17 5.33 -27.96 -0.15 -1.32 16 23 C 0.18 1.84 0.40 -131.29 -0.05 1.78 16 24 C -0.14 -1.12 5.70 -26.16 -0.15 -1.27 16 25 C -0.14 -1.30 8.04 -25.82 -0.21 -1.51 16 26 C -0.16 -1.75 6.72 -25.98 -0.17 -1.92 16 27 N -0.31 -7.37 12.42 31.44 0.39 -6.98 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.04 1.19 8.14 -51.92 -0.42 0.76 16 30 H 0.06 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.17 2.81 8.06 -52.49 -0.42 2.39 16 32 H 0.16 3.21 5.93 -52.48 -0.31 2.90 16 33 H 0.40 5.78 6.20 -40.82 -0.25 5.53 16 34 H 0.08 0.75 5.63 -51.93 -0.29 0.45 16 35 H 0.07 0.49 7.98 -51.93 -0.41 0.07 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.05 0.31 5.65 -51.93 -0.29 0.01 16 38 H 0.35 2.32 8.88 -39.29 -0.35 1.97 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.03 0.24 6.22 -51.93 -0.32 -0.09 16 41 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 42 H 0.08 0.61 8.00 -51.93 -0.42 0.19 16 43 H 0.09 0.58 8.05 -51.93 -0.42 0.16 16 44 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 45 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.12 1.78 5.01 -52.25 -0.26 1.52 16 48 H 0.08 0.81 7.96 -51.93 -0.41 0.39 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -32.87 368.91 -10.51 -43.38 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -6.99 Total: 8.49 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -3.78 Total: 0.34 kcal Atomic # 7 Polarization: -63.99 SS G_CDS: -0.33 Total: -64.32 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.05 Total: -10.04 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.87 -10.51 -43.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883542241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.279 kcal (2) G-P(sol) polarization free energy of solvation -32.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds