Wall clock time and date at job start Tue Mar 31 2020 18:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00045 * 2 1 4 4 H 1.48498 * 109.46905 * 240.00541 * 3 2 1 5 5 H 1.48501 * 109.46858 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47112 * 120.00348 * 3 2 1 7 7 C 1.37885 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50691 * 120.00024 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.34968 * 125.97957 * 124.99862 * 10 9 7 12 12 C 1.35243 * 107.85904 * 179.70697 * 11 10 9 13 13 C 1.40393 * 107.86777 * 0.43303 * 12 11 10 14 14 N 1.40200 * 125.97066 * 179.82586 * 13 12 11 15 15 C 1.34775 * 120.00254 * 359.71380 * 14 13 12 16 16 O 1.21595 * 119.99731 * 5.31332 * 15 14 13 17 17 N 1.34777 * 120.00121 * 185.31060 * 15 14 13 18 18 C 1.48195 * 118.39283 * 357.24344 * 17 15 14 19 19 C 1.54399 * 110.82113 * 138.59075 * 18 17 15 20 20 N 1.44683 * 109.31473 * 320.82496 * 19 18 17 21 21 C 1.45898 * 110.12181 * 96.03249 * 20 19 18 22 22 C 1.47971 * 114.46115 * 269.28851 * 21 20 19 23 23 C 1.44454 * 118.39160 * 177.23862 * 17 15 14 24 24 C 1.53232 * 114.99963 * 137.71322 * 23 17 15 25 25 C 1.53872 * 86.97634 * 268.62019 * 24 23 17 26 26 C 1.53553 * 114.87387 * 38.18134 * 23 17 15 27 27 N 1.31205 * 108.05643 * 359.56304 * 13 12 11 28 28 H 0.96991 * 120.00338 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47160 * 60.00073 * 9 7 2 30 30 H 1.09001 * 109.47500 * 300.00043 * 9 7 2 31 31 H 1.07999 * 126.06819 * 0.02562 * 11 10 9 32 32 H 1.08008 * 126.06609 * 180.25367 * 12 11 10 33 33 H 0.96998 * 119.99777 * 179.71448 * 14 13 12 34 34 H 1.09007 * 109.21096 * 18.24374 * 18 17 15 35 35 H 1.09002 * 109.17363 * 258.90829 * 18 17 15 36 36 H 1.08995 * 109.49759 * 200.87588 * 19 18 17 37 37 H 1.08999 * 109.52377 * 80.79273 * 19 18 17 38 38 H 1.00900 * 111.00487 * 219.35755 * 20 19 18 39 39 H 1.08997 * 108.49037 * 148.00199 * 21 20 19 40 40 H 1.09002 * 108.48151 * 30.57168 * 21 20 19 41 41 H 1.08999 * 109.74324 * 301.34704 * 22 21 20 42 42 H 1.08999 * 109.78064 * 180.64654 * 22 21 20 43 43 H 1.08996 * 113.63259 * 154.09709 * 24 23 17 44 44 H 1.09004 * 113.71116 * 23.14564 * 24 23 17 45 45 H 1.09001 * 113.60228 * 89.61721 * 25 24 23 46 46 H 1.09008 * 113.59599 * 220.39214 * 25 24 23 47 47 H 1.09004 * 113.71239 * 337.01273 * 26 23 17 48 48 H 1.09001 * 113.63306 * 205.96858 * 26 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6964 -1.2126 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.2422 -4.6224 0.8942 12 6 3.2567 -5.4461 0.5458 13 6 3.8684 -4.9151 -0.6008 14 7 4.9643 -5.4662 -1.2797 15 6 5.5284 -6.6066 -0.8350 16 8 5.0292 -7.2091 0.0957 17 7 6.6459 -7.0791 -1.4220 18 6 7.1891 -6.3505 -2.5925 19 6 8.7287 -6.2622 -2.5179 20 7 9.1287 -6.0255 -1.1478 21 6 9.4723 -7.2868 -0.5001 22 6 8.3416 -7.9522 0.1841 23 6 7.2555 -8.2709 -0.8791 24 6 7.7412 -9.2826 -1.9224 25 6 6.3545 -9.9402 -1.8110 26 6 6.2651 -9.3406 -0.3967 27 7 3.2317 -3.8159 -0.9293 28 1 -0.4850 0.8399 0.0004 29 1 0.6241 -2.5567 -0.8904 30 1 0.6248 -2.5572 0.8897 31 1 1.5777 -4.7525 1.7356 32 1 3.5468 -6.3504 1.0603 33 1 5.3165 -5.0268 -2.0695 34 1 6.7727 -5.3433 -2.6129 35 1 6.9038 -6.8749 -3.5045 36 1 9.0769 -5.4419 -3.1455 37 1 9.1646 -7.1981 -2.8676 38 1 9.8984 -5.3746 -1.1031 39 1 10.2562 -7.0967 0.2330 40 1 9.8677 -7.9664 -1.2551 41 1 7.9292 -7.2887 0.9442 42 1 8.6842 -8.8768 0.6489 43 1 8.5550 -9.9166 -1.5705 44 1 7.9390 -8.8432 -2.9002 45 1 5.6206 -9.5314 -2.5055 46 1 6.3862 -11.0298 -1.8218 47 1 5.2792 -8.9461 -0.1508 48 1 6.6681 -9.9907 0.3799 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883542241.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:08 Heat of formation + Delta-G solvation = 94.215961 kcal Electronic energy + Delta-G solvation = -29680.587348 eV Core-core repulsion = 25773.656449 eV Total energy + Delta-G solvation = -3906.930899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.51429 -41.77258 -39.60821 -37.68234 -36.11119 -35.55434 -34.76581 -32.59258 -32.42322 -30.89228 -28.92385 -28.41092 -26.61722 -25.96162 -24.98154 -23.63701 -22.48214 -22.10349 -21.87117 -20.84391 -19.72072 -18.67384 -18.62550 -18.09519 -17.50547 -17.16407 -16.82025 -16.50247 -16.17728 -15.83525 -15.74070 -15.55888 -15.45043 -15.10486 -14.50989 -14.24479 -13.99636 -13.91122 -13.83270 -13.63904 -13.47381 -13.15678 -12.93983 -12.72130 -12.61065 -12.47589 -12.26825 -12.23557 -12.16414 -11.86476 -11.73312 -11.56092 -11.36356 -11.27615 -11.15761 -10.71103 -10.27492 -9.72196 -9.48826 -9.35163 -8.96286 -8.31496 -6.46072 1.11938 1.18515 1.38519 1.40833 1.49761 1.75781 2.05978 2.36077 2.47285 2.79754 2.99610 3.32867 3.58563 3.74227 3.84581 3.94771 3.97159 4.03495 4.08198 4.25935 4.31162 4.48472 4.59788 4.70182 4.71059 4.72228 4.81013 4.84469 4.87738 4.90958 4.93086 4.97872 5.02413 5.07169 5.07423 5.13271 5.20073 5.30712 5.50889 5.52596 5.57182 5.71742 5.85549 6.01034 6.04713 6.21490 6.31873 6.56647 6.64286 6.72931 7.16436 7.23730 7.53680 8.75674 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.018587 B = 0.002786 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.098794 B =10047.050013 C =10935.856043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.019 3.981 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.274 3.726 10 N -0.346 5.346 11 C 0.055 3.945 12 C -0.292 4.292 13 C 0.287 3.713 14 N -0.641 5.641 15 C 0.709 3.291 16 O -0.588 6.588 17 N -0.573 5.573 18 C 0.102 3.898 19 C 0.051 3.949 20 N -0.701 5.701 21 C 0.065 3.935 22 C -0.117 4.117 23 C 0.166 3.834 24 C -0.120 4.120 25 C -0.137 4.137 26 C -0.167 4.167 27 N -0.350 5.350 28 H 0.273 0.727 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.200 0.800 32 H 0.165 0.835 33 H 0.413 0.587 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.066 0.934 38 H 0.356 0.644 39 H 0.065 0.935 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.080 0.920 45 H 0.059 0.941 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.681 -19.338 -5.578 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.182 4.182 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.155 3.845 10 N -0.128 5.128 11 C -0.093 4.093 12 C -0.323 4.323 13 C 0.031 3.969 14 N -0.295 5.295 15 C 0.410 3.590 16 O -0.467 6.467 17 N -0.308 5.308 18 C -0.020 4.020 19 C -0.080 4.080 20 N -0.333 5.333 21 C -0.064 4.064 22 C -0.157 4.157 23 C 0.080 3.920 24 C -0.158 4.158 25 C -0.175 4.175 26 C -0.204 4.204 27 N -0.182 5.182 28 H 0.082 0.918 29 H 0.038 0.962 30 H 0.075 0.925 31 H 0.217 0.783 32 H 0.183 0.817 33 H 0.253 0.747 34 H 0.091 0.909 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.176 0.824 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.113 0.887 43 H 0.131 0.869 44 H 0.098 0.902 45 H 0.078 0.922 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 20.449 -18.597 -5.528 28.188 hybrid contribution 0.772 0.603 -0.057 0.982 sum 21.221 -17.994 -5.585 28.378 Atomic orbital electron populations 1.69985 1.07231 1.28840 1.49931 1.25748 0.95850 1.02726 0.93861 0.85403 0.78298 0.77812 0.78939 1.19770 1.19705 1.19499 1.21380 0.93363 0.91020 1.52878 0.93019 1.19307 0.85667 0.81530 0.97986 1.48796 1.23952 1.20364 1.19640 1.23126 1.00562 0.88887 0.96758 1.21657 1.02220 1.06415 1.01990 1.19119 0.90794 0.92883 0.94085 1.41806 1.30480 1.25549 1.31631 1.15893 0.81177 0.79724 0.82159 1.90684 1.65575 1.58492 1.31962 1.46295 1.24295 1.27477 1.32693 1.22534 0.96388 0.96001 0.87101 1.22290 0.93177 1.02731 0.89760 1.58999 1.44314 1.13525 1.16481 1.20814 0.96391 0.90493 0.98720 1.21536 0.96095 1.00764 0.97268 1.21099 0.93455 0.82789 0.94656 1.23136 0.97579 0.96381 0.98686 1.22799 0.97314 1.00684 0.96656 1.23681 1.02418 0.96718 0.97617 1.77228 1.05028 1.18299 1.17610 0.91819 0.96159 0.92467 0.78349 0.81741 0.74684 0.90945 0.89559 0.88480 0.91578 0.82446 0.91597 0.92663 0.94528 0.88651 0.86950 0.90174 0.92175 0.90189 0.89828 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.09 13.29 21.45 0.28 -52.81 16 2 C 0.02 1.04 5.46 84.66 0.46 1.50 16 3 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.55 -31.73 9.24 25.60 0.24 -31.49 16 8 H 0.05 3.11 7.81 -2.91 -0.02 3.08 16 9 C 0.27 14.68 6.26 85.63 0.54 15.22 16 10 N -0.35 -16.98 3.67 -351.86 -1.29 -18.27 16 11 C 0.06 2.31 11.44 83.52 0.96 3.26 16 12 C -0.29 -12.25 9.61 22.10 0.21 -12.04 16 13 C 0.29 12.32 8.11 133.31 1.08 13.40 16 14 N -0.64 -21.87 5.30 -321.23 -1.70 -23.57 16 15 C 0.71 22.61 8.00 179.05 1.43 24.04 16 16 O -0.59 -21.93 10.22 -4.01 -0.04 -21.97 16 17 N -0.57 -12.88 2.49 -784.22 -1.95 -14.83 16 18 C 0.10 1.62 5.64 86.53 0.49 2.10 16 19 C 0.05 0.55 6.07 87.19 0.53 1.08 16 20 N -0.70 -10.05 6.27 -527.50 -3.30 -13.36 16 21 C 0.06 0.84 5.61 84.91 0.48 1.31 16 22 C -0.12 -2.08 5.33 29.80 0.16 -1.92 16 23 C 0.17 3.16 0.40 5.03 0.00 3.16 16 24 C -0.12 -1.49 5.70 30.97 0.18 -1.31 16 25 C -0.14 -2.30 8.04 31.19 0.25 -2.04 16 26 C -0.17 -3.65 6.72 31.08 0.21 -3.44 16 27 N -0.35 -17.15 12.42 -54.44 -0.68 -17.82 16 28 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 29 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 30 H 0.06 2.99 8.07 -2.39 -0.02 2.98 16 31 H 0.20 6.64 8.06 -2.91 -0.02 6.62 16 32 H 0.17 6.77 5.93 -2.91 -0.02 6.75 16 33 H 0.41 12.02 6.20 -92.71 -0.57 11.44 16 34 H 0.07 1.26 5.63 -2.38 -0.01 1.25 16 35 H 0.09 1.04 7.98 -2.39 -0.02 1.02 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 0.52 5.65 -2.39 -0.01 0.51 16 38 H 0.36 3.94 8.88 -89.69 -0.80 3.15 16 39 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.51 6.22 -2.39 -0.01 0.49 16 41 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.30 8.00 -2.39 -0.02 1.28 16 43 H 0.11 0.93 8.05 -2.39 -0.02 0.92 16 44 H 0.08 0.84 6.18 -2.39 -0.01 0.82 16 45 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.08 2.55 5.01 -7.57 -0.04 2.52 16 48 H 0.09 1.75 7.96 -2.39 -0.02 1.73 16 Total: -1.00 -73.36 368.91 0.16 -73.21 By element: Atomic # 1 Polarization: 30.69 SS G_CDS: -0.39 Total: 30.30 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.21 Total: 12.84 kcal Atomic # 7 Polarization: -132.02 SS G_CDS: -8.64 Total: -140.67 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -73.36 0.16 -73.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883542241.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.422 kcal (2) G-P(sol) polarization free energy of solvation -73.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds