Wall clock time and date at job start Tue Mar 31 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47051 * 2 1 4 4 C 1.46496 * 119.99788 * 274.99903 * 3 2 1 5 5 C 1.50700 * 109.47413 * 274.94924 * 4 3 2 6 6 H 1.08004 * 119.99902 * 4.86676 * 5 4 3 7 7 C 1.37871 * 120.00375 * 184.86444 * 5 4 3 8 8 N 1.31515 * 120.00159 * 5.21795 * 7 5 4 9 9 Si 1.86804 * 120.00389 * 185.21741 * 7 5 4 10 10 H 1.48502 * 109.46877 * 5.00242 * 9 7 5 11 11 H 1.48495 * 109.47316 * 125.00378 * 9 7 5 12 12 H 1.48500 * 109.46948 * 245.00945 * 9 7 5 13 13 S 1.65597 * 120.00246 * 95.00171 * 3 2 1 14 14 O 1.42101 * 106.40010 * 341.79289 * 13 3 2 15 15 O 1.42098 * 106.39994 * 208.87739 * 13 3 2 16 16 N 1.65598 * 107.22072 * 95.33288 * 13 3 2 17 17 C 1.46502 * 119.99800 * 297.77197 * 16 13 3 18 18 C 1.53004 * 109.47113 * 160.96066 * 17 16 13 19 19 N 1.46897 * 109.47398 * 173.88653 * 18 17 16 20 20 C 1.48533 * 110.99842 * 296.21155 * 19 18 17 21 21 C 1.54940 * 103.37783 * 159.63660 * 20 19 18 22 22 C 1.54775 * 102.83345 * 322.79930 * 21 20 19 23 23 C 1.53000 * 110.15401 * 262.84266 * 22 21 20 24 24 C 1.53005 * 110.47847 * 140.76950 * 22 21 20 25 25 C 1.47898 * 111.00007 * 53.60612 * 19 18 17 26 26 H 1.09003 * 109.46801 * 299.99968 * 1 2 3 27 27 H 1.09004 * 109.47040 * 60.00128 * 1 2 3 28 28 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47278 * 240.00091 * 2 1 3 30 30 H 1.08995 * 109.47170 * 119.99639 * 2 1 3 31 31 H 1.09007 * 109.47074 * 34.94616 * 4 3 2 32 32 H 1.09000 * 109.47290 * 154.94588 * 4 3 2 33 33 H 0.97001 * 120.00250 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99851 * 117.76537 * 16 13 3 35 35 H 1.09000 * 109.47507 * 40.95800 * 17 16 13 36 36 H 1.09002 * 109.47288 * 280.95501 * 17 16 13 37 37 H 1.09002 * 109.47109 * 53.88484 * 18 17 16 38 38 H 1.08999 * 109.46895 * 293.89070 * 18 17 16 39 39 H 1.08999 * 110.66850 * 278.15648 * 20 19 18 40 40 H 1.09002 * 110.67022 * 41.11993 * 20 19 18 41 41 H 1.09004 * 110.72270 * 81.03110 * 21 20 19 42 42 H 1.09008 * 110.72162 * 204.30839 * 21 20 19 43 43 H 1.08995 * 109.47177 * 180.46064 * 23 22 21 44 44 H 1.09000 * 109.47559 * 300.47024 * 23 22 21 45 45 H 1.09010 * 109.46753 * 60.46684 * 23 22 21 46 46 H 1.08994 * 109.47126 * 304.09897 * 24 22 21 47 47 H 1.09000 * 109.47033 * 64.09455 * 24 22 21 48 48 H 1.08995 * 109.47464 * 184.09137 * 24 22 21 49 49 H 1.08996 * 109.91793 * 333.50972 * 25 19 18 50 50 H 1.08999 * 109.91601 * 94.60718 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4953 1.7898 -1.8817 6 1 4.1399 1.0539 -1.4242 7 6 3.8957 2.4375 -3.0311 8 7 3.1590 3.4054 -3.5311 9 14 5.4846 1.9403 -3.8783 10 1 6.0616 0.7562 -3.1925 11 1 5.2046 1.6030 -5.2970 12 1 6.4508 3.0664 -3.8184 13 16 2.4122 2.1203 1.4286 14 8 1.7870 1.3647 2.4569 15 8 2.1848 3.5099 1.2375 16 7 4.0444 1.9383 1.6410 17 6 4.6210 0.5980 1.7722 18 6 6.1223 0.6580 1.4829 19 7 6.7265 -0.6528 1.7560 20 6 6.6101 -1.0032 3.1947 21 6 6.7861 -2.5425 3.2042 22 6 6.0533 -2.9803 1.9131 23 6 4.6300 -3.4345 2.2431 24 6 6.8211 -4.1061 1.2173 25 6 6.0207 -1.7251 1.0215 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.3622 1.8090 -1.9457 32 1 2.0912 3.1802 -1.0758 33 1 3.4405 3.8609 -4.3400 34 1 4.6187 2.7192 1.6785 35 1 4.1408 -0.0753 1.0622 36 1 4.4609 0.2311 2.7861 37 1 6.5853 1.4114 2.1202 38 1 6.2804 0.9202 0.4368 39 1 7.3991 -0.5221 3.7728 40 1 5.6289 -0.7258 3.5801 41 1 7.8417 -2.8103 3.1568 42 1 6.3155 -2.9791 4.0852 43 1 4.1273 -3.7477 1.3281 44 1 4.6680 -4.2706 2.9414 45 1 4.0806 -2.6085 2.6949 46 1 7.8432 -3.7820 1.0218 47 1 6.8357 -4.9867 1.8594 48 1 6.3312 -4.3516 0.2751 49 1 4.9885 -1.4295 0.8341 50 1 6.5272 -1.9237 0.0770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000908083273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:01 Heat of formation + Delta-G solvation = -80.389991 kcal Electronic energy + Delta-G solvation = -29446.033383 eV Core-core repulsion = 25634.682202 eV Total energy + Delta-G solvation = -3811.351181 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.90100 -36.69824 -36.08836 -35.84956 -35.22540 -33.47742 -32.74024 -30.10031 -29.96339 -27.66776 -27.35742 -26.65194 -25.24954 -23.26013 -23.03868 -21.73808 -20.54774 -19.25911 -18.83691 -17.12890 -16.98743 -16.39485 -16.32526 -15.59386 -15.29905 -14.98766 -14.73613 -14.38889 -14.18849 -13.86866 -13.66523 -13.46795 -13.37640 -12.97989 -12.85431 -12.73236 -12.31075 -12.13510 -11.98317 -11.90028 -11.68677 -11.62042 -11.51225 -11.47152 -11.40348 -11.34067 -11.09191 -11.02048 -10.95188 -10.75222 -10.71605 -10.57332 -10.53078 -10.40582 -10.10242 -9.80456 -9.14096 -8.51375 -8.35399 -8.09308 -6.13320 -4.19477 1.29554 3.22569 3.31364 3.32888 3.46074 3.98294 4.19187 4.34489 4.39550 4.52577 4.70168 4.88348 5.02437 5.09954 5.13519 5.19754 5.20940 5.24792 5.35581 5.40888 5.50418 5.55980 5.58299 5.66736 5.71532 5.74759 5.77218 5.78680 5.85320 5.87263 5.91676 6.03972 6.05497 6.07924 6.16547 6.23072 6.26251 6.31158 6.60857 6.63281 6.85204 6.98694 7.20962 7.36906 7.46178 7.64548 7.83905 8.13161 8.85216 9.46445 10.94512 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.005157 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.781348 B = 5427.883554 C = 6697.093654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.127 3.873 3 N -0.991 5.991 4 C 0.245 3.755 5 C -0.537 4.537 6 H 0.062 0.938 7 C 0.065 3.935 8 N -0.888 5.888 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.787 3.213 14 O -1.001 7.001 15 O -0.981 6.981 16 N -1.120 6.120 17 C 0.092 3.908 18 C 0.036 3.964 19 N -0.508 5.508 20 C 0.023 3.977 21 C -0.114 4.114 22 C -0.077 4.077 23 C -0.142 4.142 24 C -0.135 4.135 25 C 0.030 3.970 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.264 0.736 34 H 0.413 0.587 35 H 0.075 0.925 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.060 0.940 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -12.620 11.152 17.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.001 3.999 3 N -0.833 5.833 4 C 0.123 3.877 5 C -0.577 4.577 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.795 3.205 14 O -0.985 6.985 15 O -0.965 6.965 16 N -0.879 5.879 17 C -0.037 4.037 18 C -0.093 4.093 19 N -0.231 5.231 20 C -0.104 4.104 21 C -0.152 4.152 22 C -0.077 4.077 23 C -0.199 4.199 24 C -0.192 4.192 25 C -0.098 4.098 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.052 0.948 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.247 0.753 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.078 0.922 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.998 -12.161 11.411 17.409 hybrid contribution 0.534 -0.029 -0.771 0.938 sum 5.532 -12.190 10.640 17.100 Atomic orbital electron populations 1.22195 0.96852 1.01411 1.02383 1.21025 0.93862 0.83075 1.01962 1.57703 1.78568 1.22782 1.24235 1.19201 0.97081 0.92456 0.78929 1.21545 1.03011 1.23183 1.09913 0.91969 1.24956 0.97161 0.94514 0.97242 1.69953 1.38544 1.22211 1.21896 0.86551 0.83370 0.78693 0.79435 1.19598 1.21019 1.20918 1.01704 0.72779 0.73065 0.72999 1.93535 1.74882 1.73465 1.56609 1.93591 1.84255 1.32262 1.86380 1.55830 1.28658 1.12852 1.90553 1.21833 0.96817 0.84237 1.00763 1.22553 0.90992 0.91880 1.03908 1.65010 1.50835 1.01553 1.05717 1.23354 1.00934 0.95821 0.90316 1.22649 1.00827 0.94853 0.96845 1.21447 0.95757 0.95269 0.95269 1.21942 0.95166 1.01165 1.01669 1.21837 1.00069 0.97258 1.00050 1.23215 0.98517 0.90257 0.97778 0.92778 0.91982 0.92304 0.90252 0.91974 0.94765 0.92863 0.92639 0.75346 0.90742 0.92134 0.90031 0.88894 0.90158 0.92910 0.90800 0.91105 0.92236 0.92514 0.92517 0.92283 0.92818 0.92527 0.92221 0.90025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.62 10.24 37.16 0.38 -2.24 16 2 C 0.13 2.15 5.79 -4.04 -0.02 2.13 16 3 N -0.99 -19.96 2.82 -115.66 -0.33 -20.29 16 4 C 0.25 5.95 5.46 -5.20 -0.03 5.92 16 5 C -0.54 -13.62 9.38 -34.44 -0.32 -13.95 16 6 H 0.06 1.51 7.82 -52.48 -0.41 1.10 16 7 C 0.06 1.71 5.45 -17.82 -0.10 1.62 16 8 N -0.89 -25.12 13.29 55.43 0.74 -24.39 16 9 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 S 2.79 55.18 6.08 -107.50 -0.65 54.53 16 14 O -1.00 -20.34 16.75 -57.17 -0.96 -21.30 16 15 O -0.98 -22.91 16.81 -57.17 -0.96 -23.87 16 16 N -1.12 -18.33 6.03 -10.61 -0.06 -18.39 16 17 C 0.09 1.31 5.47 -4.04 -0.02 1.29 16 18 C 0.04 0.48 5.64 -3.82 -0.02 0.46 16 19 N -0.51 -6.22 5.54 -230.46 -1.28 -7.49 16 20 C 0.02 0.24 6.40 -1.90 -0.01 0.23 16 21 C -0.11 -1.03 6.18 -24.77 -0.15 -1.19 16 22 C -0.08 -0.75 0.97 -153.05 -0.15 -0.89 16 23 C -0.14 -1.31 8.20 37.16 0.30 -1.01 16 24 C -0.13 -1.18 8.24 37.16 0.31 -0.87 16 25 C 0.03 0.36 5.78 -2.76 -0.02 0.34 16 26 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 1.32 8.11 -51.93 -0.42 0.90 16 30 H 0.06 0.95 7.11 -51.93 -0.37 0.58 16 31 H 0.03 0.86 8.11 -51.92 -0.42 0.44 16 32 H 0.05 1.45 6.98 -51.93 -0.36 1.09 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.41 6.16 8.68 -34.47 -0.30 5.86 16 35 H 0.07 1.11 5.41 -51.93 -0.28 0.83 16 36 H 0.06 0.81 5.98 -51.93 -0.31 0.50 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.56 5.82 -51.93 -0.30 0.26 16 41 H 0.07 0.66 7.85 -51.93 -0.41 0.25 16 42 H 0.07 0.57 7.86 -51.92 -0.41 0.16 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.57 8.14 -51.92 -0.42 0.14 16 46 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 47 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 49 H 0.06 0.76 4.76 -51.93 -0.25 0.51 16 50 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 LS Contribution 399.52 15.07 6.02 6.02 Total: -1.00 -31.09 399.52 -11.20 -42.29 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -8.85 Total: 5.66 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 0.15 Total: -8.16 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -0.93 Total: -70.56 kcal Atomic # 8 Polarization: -43.25 SS G_CDS: -1.92 Total: -45.17 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 55.18 SS G_CDS: -0.65 Total: 54.53 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.09 -11.20 -42.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908083273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.097 kcal (2) G-P(sol) polarization free energy of solvation -31.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds