Wall clock time and date at job start Tue Mar 31 2020 17:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46508 * 109.47051 * 2 1 4 4 C 1.46496 * 119.99788 * 274.99903 * 3 2 1 5 5 C 1.50700 * 109.47413 * 274.94924 * 4 3 2 6 6 H 1.08004 * 119.99902 * 4.86676 * 5 4 3 7 7 C 1.37871 * 120.00375 * 184.86444 * 5 4 3 8 8 N 1.31515 * 120.00159 * 5.21795 * 7 5 4 9 9 Si 1.86804 * 120.00389 * 185.21741 * 7 5 4 10 10 H 1.48502 * 109.46877 * 5.00242 * 9 7 5 11 11 H 1.48495 * 109.47316 * 125.00378 * 9 7 5 12 12 H 1.48500 * 109.46948 * 245.00945 * 9 7 5 13 13 S 1.65597 * 120.00246 * 95.00171 * 3 2 1 14 14 O 1.42101 * 106.40010 * 341.79289 * 13 3 2 15 15 O 1.42098 * 106.39994 * 208.87739 * 13 3 2 16 16 N 1.65598 * 107.22072 * 95.33288 * 13 3 2 17 17 C 1.46502 * 119.99800 * 297.77197 * 16 13 3 18 18 C 1.53004 * 109.47113 * 160.96066 * 17 16 13 19 19 N 1.46897 * 109.47398 * 173.88653 * 18 17 16 20 20 C 1.48533 * 110.99842 * 296.21155 * 19 18 17 21 21 C 1.54940 * 103.37783 * 159.63660 * 20 19 18 22 22 C 1.54775 * 102.83345 * 322.79930 * 21 20 19 23 23 C 1.53000 * 110.15401 * 262.84266 * 22 21 20 24 24 C 1.53005 * 110.47847 * 140.76950 * 22 21 20 25 25 C 1.47898 * 111.00007 * 53.60612 * 19 18 17 26 26 H 1.09003 * 109.46801 * 299.99968 * 1 2 3 27 27 H 1.09004 * 109.47040 * 60.00128 * 1 2 3 28 28 H 1.08996 * 109.46933 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47278 * 240.00091 * 2 1 3 30 30 H 1.08995 * 109.47170 * 119.99639 * 2 1 3 31 31 H 1.09007 * 109.47074 * 34.94616 * 4 3 2 32 32 H 1.09000 * 109.47290 * 154.94588 * 4 3 2 33 33 H 0.97001 * 120.00250 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99851 * 117.76537 * 16 13 3 35 35 H 1.09000 * 109.47507 * 40.95800 * 17 16 13 36 36 H 1.09002 * 109.47288 * 280.95501 * 17 16 13 37 37 H 1.09002 * 109.47109 * 53.88484 * 18 17 16 38 38 H 1.08999 * 109.46895 * 293.89070 * 18 17 16 39 39 H 1.08999 * 110.66850 * 278.15648 * 20 19 18 40 40 H 1.09002 * 110.67022 * 41.11993 * 20 19 18 41 41 H 1.09004 * 110.72270 * 81.03110 * 21 20 19 42 42 H 1.09008 * 110.72162 * 204.30839 * 21 20 19 43 43 H 1.08995 * 109.47177 * 180.46064 * 23 22 21 44 44 H 1.09000 * 109.47559 * 300.47024 * 23 22 21 45 45 H 1.09010 * 109.46753 * 60.46684 * 23 22 21 46 46 H 1.08994 * 109.47126 * 304.09897 * 24 22 21 47 47 H 1.09000 * 109.47033 * 64.09455 * 24 22 21 48 48 H 1.08995 * 109.47464 * 184.09137 * 24 22 21 49 49 H 1.08996 * 109.91793 * 333.50972 * 25 19 18 50 50 H 1.08999 * 109.91601 * 94.60718 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4953 1.7898 -1.8817 6 1 4.1399 1.0539 -1.4242 7 6 3.8957 2.4375 -3.0311 8 7 3.1590 3.4054 -3.5311 9 14 5.4846 1.9403 -3.8783 10 1 6.0616 0.7562 -3.1925 11 1 5.2046 1.6030 -5.2970 12 1 6.4508 3.0664 -3.8184 13 16 2.4122 2.1203 1.4286 14 8 1.7870 1.3647 2.4569 15 8 2.1848 3.5099 1.2375 16 7 4.0444 1.9383 1.6410 17 6 4.6210 0.5980 1.7722 18 6 6.1223 0.6580 1.4829 19 7 6.7265 -0.6528 1.7560 20 6 6.6101 -1.0032 3.1947 21 6 6.7861 -2.5425 3.2042 22 6 6.0533 -2.9803 1.9131 23 6 4.6300 -3.4345 2.2431 24 6 6.8211 -4.1061 1.2173 25 6 6.0207 -1.7251 1.0215 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 1.3622 1.8090 -1.9457 32 1 2.0912 3.1802 -1.0758 33 1 3.4405 3.8609 -4.3400 34 1 4.6187 2.7192 1.6785 35 1 4.1408 -0.0753 1.0622 36 1 4.4609 0.2311 2.7861 37 1 6.5853 1.4114 2.1202 38 1 6.2804 0.9202 0.4368 39 1 7.3991 -0.5221 3.7728 40 1 5.6289 -0.7258 3.5801 41 1 7.8417 -2.8103 3.1568 42 1 6.3155 -2.9791 4.0852 43 1 4.1273 -3.7477 1.3281 44 1 4.6680 -4.2706 2.9414 45 1 4.0806 -2.6085 2.6949 46 1 7.8432 -3.7820 1.0218 47 1 6.8357 -4.9867 1.8594 48 1 6.3312 -4.3516 0.2751 49 1 4.9885 -1.4295 0.8341 50 1 6.5272 -1.9237 0.0770 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000908083273.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:52:01 Heat of formation + Delta-G solvation = -103.185802 kcal Electronic energy + Delta-G solvation = -29447.021884 eV Core-core repulsion = 25634.682202 eV Total energy + Delta-G solvation = -3812.339682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.187 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.77834 -38.35544 -37.71232 -36.97110 -36.92102 -34.70203 -34.51809 -31.54908 -30.94363 -28.64184 -28.50924 -28.10397 -26.21485 -24.95555 -24.05029 -23.30534 -21.51607 -20.45623 -19.95787 -18.70005 -18.66366 -18.21558 -17.69227 -16.99318 -16.39467 -16.22618 -15.98322 -15.75896 -15.41077 -15.12421 -14.81068 -14.67202 -14.46405 -14.28749 -13.88665 -13.80503 -13.62944 -13.61336 -13.39222 -13.31310 -13.21413 -13.07655 -12.86094 -12.78939 -12.68818 -12.59062 -12.33777 -12.30027 -12.27311 -12.10695 -12.04646 -11.75708 -11.64100 -11.53321 -11.46382 -11.32437 -10.59788 -10.41595 -9.81620 -9.31445 -8.16631 -6.29254 -0.29719 1.41445 1.44359 1.54645 1.93864 2.42393 2.57317 3.09495 3.15496 3.41773 3.60015 3.73865 3.83976 3.88369 3.96844 4.03909 4.26096 4.37640 4.39814 4.41321 4.43494 4.48852 4.55773 4.68128 4.76884 4.83141 4.84397 4.89069 4.91630 4.95846 4.99503 5.08831 5.12021 5.12682 5.17239 5.23891 5.26127 5.34762 5.38202 5.41078 5.50854 5.52198 5.75400 5.89574 5.95208 6.02286 6.11189 6.14125 6.83204 7.40745 8.91671 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.009657 B = 0.005157 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2898.781348 B = 5427.883554 C = 6697.093654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.119 3.881 3 N -0.994 5.994 4 C 0.261 3.739 5 C -0.534 4.534 6 H 0.073 0.927 7 C 0.012 3.988 8 N -0.929 5.929 9 Si 0.956 3.044 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.284 1.284 13 S 2.800 3.200 14 O -1.005 7.005 15 O -1.021 7.021 16 N -1.113 6.113 17 C 0.090 3.910 18 C 0.043 3.957 19 N -0.514 5.514 20 C 0.021 3.979 21 C -0.109 4.109 22 C -0.075 4.075 23 C -0.140 4.140 24 C -0.132 4.132 25 C 0.025 3.975 26 H 0.045 0.955 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.021 0.979 32 H 0.018 0.982 33 H 0.264 0.736 34 H 0.421 0.579 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.047 0.953 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.053 0.947 49 H 0.050 0.950 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.550 -14.948 12.280 20.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.007 4.007 3 N -0.836 5.836 4 C 0.137 3.863 5 C -0.573 4.573 6 H 0.091 0.909 7 C -0.187 4.187 8 N -0.568 5.568 9 Si 0.782 3.218 10 H -0.181 1.181 11 H -0.209 1.209 12 H -0.210 1.210 13 S 2.807 3.193 14 O -0.988 6.988 15 O -1.005 7.005 16 N -0.875 5.875 17 C -0.037 4.037 18 C -0.087 4.087 19 N -0.237 5.237 20 C -0.107 4.107 21 C -0.146 4.146 22 C -0.076 4.076 23 C -0.198 4.198 24 C -0.189 4.189 25 C -0.103 4.103 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.111 0.889 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.036 0.964 33 H 0.073 0.927 34 H 0.256 0.744 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.096 0.904 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.090 0.910 45 H 0.066 0.934 46 H 0.073 0.927 47 H 0.086 0.914 48 H 0.072 0.928 49 H 0.068 0.932 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.362 -14.518 12.562 20.225 hybrid contribution 0.098 0.652 -1.056 1.245 sum 6.460 -13.867 11.505 19.141 Atomic orbital electron populations 1.22192 0.95772 1.03354 1.01366 1.21305 0.94881 0.81347 1.03127 1.57587 1.79285 1.23961 1.22717 1.18738 0.96466 0.90872 0.80198 1.21819 1.03238 1.22669 1.09621 0.90924 1.25773 1.00347 0.94490 0.98118 1.70084 1.40577 1.23643 1.22542 0.85538 0.79457 0.78594 0.78257 1.18144 1.20943 1.21042 1.01159 0.73436 0.71944 0.72731 1.93523 1.75571 1.73245 1.56443 1.93535 1.85294 1.34816 1.86836 1.55559 1.27540 1.14272 1.90160 1.22013 0.97489 0.82767 1.01471 1.22455 0.90226 0.93060 1.03007 1.65020 1.50551 1.01066 1.07037 1.23445 1.01179 0.96959 0.89078 1.22652 1.01172 0.93798 0.97012 1.21452 0.96400 0.94509 0.95210 1.21931 0.94610 1.01341 1.01906 1.21805 0.99560 0.97379 1.00154 1.23258 0.97634 0.91363 0.98002 0.93608 0.93169 0.88904 0.89886 0.89926 0.96131 0.96420 0.92663 0.74440 0.91201 0.90755 0.88664 0.90875 0.89204 0.93109 0.90383 0.89600 0.92417 0.91024 0.93372 0.92699 0.91416 0.92788 0.93223 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.24 71.98 0.74 -4.27 16 2 C 0.12 3.89 5.79 86.38 0.50 4.39 16 3 N -0.99 -40.14 2.82 -519.83 -1.47 -41.61 16 4 C 0.26 12.96 5.46 85.63 0.47 13.43 16 5 C -0.53 -27.18 9.38 25.60 0.24 -26.94 16 6 H 0.07 3.48 7.82 -2.91 -0.02 3.45 16 7 C 0.01 0.65 5.45 84.65 0.46 1.11 16 8 N -0.93 -53.58 13.29 21.45 0.28 -53.29 16 9 Si 0.96 41.78 29.54 68.60 2.03 43.80 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 S 2.80 110.72 6.08 -56.49 -0.34 110.38 16 14 O -1.00 -39.81 16.75 -128.00 -2.14 -41.95 16 15 O -1.02 -48.81 16.81 -128.00 -2.15 -50.96 16 16 N -1.11 -35.65 6.03 -187.48 -1.13 -36.78 16 17 C 0.09 2.45 5.47 86.38 0.47 2.92 16 18 C 0.04 1.07 5.64 86.31 0.49 1.55 16 19 N -0.51 -11.67 5.54 -883.03 -4.89 -16.56 16 20 C 0.02 0.38 6.40 86.65 0.55 0.93 16 21 C -0.11 -1.67 6.18 31.86 0.20 -1.47 16 22 C -0.08 -1.29 0.97 -51.24 -0.05 -1.34 16 23 C -0.14 -2.26 8.20 71.98 0.59 -1.67 16 24 C -0.13 -2.00 8.24 71.98 0.59 -1.41 16 25 C 0.03 0.57 5.78 86.45 0.50 1.06 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.08 2.36 7.11 -2.39 -0.02 2.35 16 31 H 0.02 1.07 8.11 -2.38 -0.02 1.05 16 32 H 0.02 1.01 6.98 -2.39 -0.02 0.99 16 33 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.42 12.32 8.68 -96.75 -0.84 11.48 16 35 H 0.07 1.99 5.41 -2.39 -0.01 1.97 16 36 H 0.07 1.85 5.98 -2.39 -0.01 1.83 16 37 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 0.96 5.82 -2.39 -0.01 0.94 16 41 H 0.08 1.15 7.85 -2.38 -0.02 1.13 16 42 H 0.09 1.08 7.86 -2.38 -0.02 1.07 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 46 H 0.05 0.88 8.12 -2.39 -0.02 0.86 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.05 1.21 4.76 -2.39 -0.01 1.19 16 50 H 0.07 1.72 7.69 -2.39 -0.02 1.70 16 Total: -1.00 -66.48 399.52 -3.99 -70.47 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 0.07 Total: 28.19 kcal Atomic # 6 Polarization: -17.45 SS G_CDS: 5.75 Total: -11.70 kcal Atomic # 7 Polarization: -141.03 SS G_CDS: -7.21 Total: -148.23 kcal Atomic # 8 Polarization: -88.62 SS G_CDS: -4.30 Total: -92.91 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 110.72 SS G_CDS: -0.34 Total: 110.38 kcal Total: -66.48 -3.99 -70.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000908083273.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.711 kcal (2) G-P(sol) polarization free energy of solvation -66.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds