Wall clock time and date at job start Tue Mar 31 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97780 * 124.71187 * 10 9 7 12 12 C 1.35250 * 107.85894 * 179.89399 * 11 10 9 13 13 C 1.40403 * 107.86439 * 0.37209 * 12 11 10 14 14 N 1.40203 * 125.96971 * 179.73326 * 13 12 11 15 15 C 1.34781 * 119.99787 * 0.02562 * 14 13 12 16 16 O 1.21593 * 120.00209 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99602 * 179.97438 * 15 14 13 18 18 C 1.46503 * 119.99752 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46969 * 180.02562 * 18 17 15 20 20 C 1.54117 * 111.69245 * 298.98510 * 19 18 17 21 21 C 1.54883 * 104.15655 * 262.30072 * 20 19 18 22 22 C 1.54821 * 102.74315 * 321.54954 * 21 20 19 23 23 C 1.54266 * 104.42818 * 37.79185 * 22 21 20 24 24 H 1.09003 * 110.67659 * 98.36995 * 23 22 21 25 25 N 1.47921 * 109.43174 * 222.10497 * 23 22 21 26 26 C 1.48475 * 105.99133 * 139.78766 * 25 23 22 27 27 C 1.54446 * 111.72136 * 61.40791 * 19 18 17 28 28 N 1.31208 * 108.05695 * 359.77079 * 13 12 11 29 29 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 30 30 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 31 31 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 32 32 H 1.07995 * 126.07130 * 0.02562 * 11 10 9 33 33 H 1.07996 * 126.06491 * 180.13594 * 12 11 10 34 34 H 0.96994 * 119.99604 * 180.02562 * 14 13 12 35 35 H 0.96999 * 119.99925 * 0.02562 * 17 15 14 36 36 H 1.09006 * 109.47130 * 300.00137 * 18 17 15 37 37 H 1.08995 * 109.47196 * 60.00343 * 18 17 15 38 38 H 1.09001 * 110.48913 * 20.96999 * 20 19 18 39 39 H 1.08998 * 110.49423 * 143.63056 * 20 19 18 40 40 H 1.09007 * 110.75498 * 79.86362 * 21 20 19 41 41 H 1.08996 * 110.75741 * 203.23563 * 21 20 19 42 42 H 1.08999 * 110.44516 * 156.53049 * 22 21 20 43 43 H 1.09003 * 110.44083 * 279.05725 * 22 21 20 44 44 H 1.00903 * 110.99948 * 19.17055 * 25 23 22 45 45 H 1.08999 * 110.67314 * 79.22660 * 26 25 23 46 46 H 1.09003 * 110.66895 * 202.18892 * 26 25 23 47 47 H 1.09000 * 110.72594 * 217.34635 * 27 19 18 48 48 H 1.09004 * 110.71602 * 340.62102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 7 3.9998 -2.5753 -0.0169 11 6 4.8467 -3.1138 -0.9193 12 6 5.0526 -4.4055 -0.5757 13 6 4.2960 -4.6704 0.5770 14 7 4.2268 -5.8969 1.2528 15 6 4.9293 -6.9552 0.8021 16 8 5.6234 -6.8462 -0.1903 17 7 4.8631 -8.1340 1.4520 18 6 5.6271 -9.2842 0.9624 19 6 5.3765 -10.4879 1.8731 20 6 5.8293 -10.2115 3.3201 21 6 7.2356 -10.8547 3.4063 22 6 7.0709 -12.1488 2.5727 23 6 6.1561 -11.7373 1.4007 24 1 6.7455 -11.5245 0.5088 25 7 5.1565 -12.8007 1.1599 26 6 3.8784 -12.1026 0.8705 27 6 3.8876 -10.8983 1.8812 28 7 3.6645 -3.5698 0.9108 29 1 -0.4849 0.8401 0.0041 30 1 3.8711 -0.6782 -0.9024 31 1 3.8785 -0.6825 0.8776 32 1 5.2841 -2.6031 -1.7645 33 1 5.6837 -5.1095 -1.0977 34 1 3.6734 -5.9837 2.0446 35 1 4.3096 -8.2209 2.2438 36 1 5.3110 -9.5250 -0.0526 37 1 6.6898 -9.0419 0.9642 38 1 5.8885 -9.1385 3.5030 39 1 5.1496 -10.6835 4.0295 40 1 7.9869 -10.2018 2.9619 41 1 7.4898 -11.0905 4.4397 42 1 8.0377 -12.4875 2.2003 43 1 6.5975 -12.9285 3.1696 44 1 5.0661 -13.4012 1.9657 45 1 3.8599 -11.7447 -0.1589 46 1 3.0295 -12.7586 1.0635 47 1 3.5815 -11.2199 2.8766 48 1 3.2600 -10.0795 1.5292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926038034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:22 Heat of formation + Delta-G solvation = 60.436963 kcal Electronic energy + Delta-G solvation = -28233.720428 eV Core-core repulsion = 24325.324761 eV Total energy + Delta-G solvation = -3908.395667 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.05164 -40.56759 -39.37275 -35.27257 -34.68499 -34.50549 -33.26119 -31.61661 -30.93053 -29.37774 -28.59836 -27.09548 -26.64719 -25.30029 -22.92703 -22.22359 -21.50080 -21.03900 -20.33190 -19.94160 -19.10282 -18.09161 -17.08338 -16.72236 -16.65582 -15.95786 -15.77133 -15.58959 -14.97180 -14.78840 -14.49407 -14.30744 -14.14966 -13.98750 -13.77729 -13.48737 -13.08206 -13.00450 -12.63909 -12.52113 -12.29516 -12.10838 -11.96758 -11.66167 -11.47174 -11.32063 -11.17786 -11.12476 -11.04938 -10.80838 -10.76581 -10.62250 -10.10447 -9.98853 -9.75416 -9.51416 -9.22395 -9.01081 -8.75870 -8.15103 -7.45719 -6.22826 -4.24824 2.35109 2.61457 3.07712 3.15903 3.23095 3.23807 3.50349 3.64997 3.81229 3.93224 4.06006 4.23484 4.26396 4.41198 4.61292 4.62233 4.73048 4.82136 4.91446 4.96728 5.05114 5.07998 5.18773 5.35601 5.39089 5.42801 5.46632 5.50087 5.53222 5.61982 5.68265 5.71986 5.77454 5.82861 5.87645 6.16652 6.26406 6.33721 6.36053 6.48596 6.58944 6.73818 6.91812 6.96945 7.29023 7.45517 7.84024 7.90604 8.35065 8.58179 8.61246 8.87307 9.32317 10.89904 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.001978 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.402314 B =14149.111445 C =14426.605176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.533 4.533 8 H 0.085 0.915 9 C 0.232 3.768 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.282 4.282 13 C 0.279 3.721 14 N -0.644 5.644 15 C 0.713 3.287 16 O -0.567 6.567 17 N -0.742 5.742 18 C 0.163 3.837 19 C -0.102 4.102 20 C -0.118 4.118 21 C -0.125 4.125 22 C -0.129 4.129 23 C 0.084 3.916 24 H 0.096 0.904 25 N -0.670 5.670 26 C 0.043 3.957 27 C -0.152 4.152 28 N -0.301 5.301 29 H 0.268 0.732 30 H 0.049 0.951 31 H 0.041 0.959 32 H 0.168 0.832 33 H 0.163 0.837 34 H 0.407 0.593 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.337 0.663 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.943 -24.791 6.715 28.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.572 4.572 8 H 0.103 0.897 9 C 0.113 3.887 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.313 4.313 13 C 0.025 3.975 14 N -0.294 5.294 15 C 0.412 3.588 16 O -0.443 6.443 17 N -0.399 5.399 18 C 0.038 3.962 19 C -0.104 4.104 20 C -0.156 4.156 21 C -0.162 4.162 22 C -0.167 4.167 23 C -0.027 4.027 24 H 0.114 0.886 25 N -0.297 5.297 26 C -0.087 4.087 27 C -0.191 4.191 28 N -0.131 5.131 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.186 0.814 33 H 0.180 0.820 34 H 0.241 0.759 35 H 0.230 0.770 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.087 0.913 44 H 0.154 0.846 45 H 0.101 0.899 46 H 0.093 0.907 47 H 0.091 0.909 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.776 -24.101 5.907 27.910 hybrid contribution -0.109 0.931 1.128 1.466 sum 12.667 -23.171 7.035 27.328 Atomic orbital electron populations 1.69877 1.06154 1.27265 1.49251 1.24843 0.94881 0.98812 0.94300 0.86900 0.80434 0.83820 0.78916 1.19708 1.20562 1.18865 1.21116 0.87830 0.95678 1.52536 0.89664 1.20030 0.97404 0.73077 0.98158 1.48582 1.33015 1.10138 1.18527 1.22552 0.96106 0.94698 0.96534 1.21537 1.11575 0.96697 1.01532 1.18789 0.98643 0.85831 0.94283 1.41388 1.49453 1.07302 1.31243 1.15613 0.80439 0.79739 0.82977 1.90870 1.43973 1.82979 1.26443 1.45045 1.52541 1.09724 1.32630 1.21034 0.95938 0.82361 0.96820 1.22627 0.96161 0.95707 0.95897 1.22554 0.96902 1.01449 0.94674 1.22516 0.97198 0.96435 1.00095 1.22700 1.00181 0.97762 0.96082 1.22963 0.93158 0.88432 0.98113 0.88566 1.62713 1.06278 1.18009 1.42732 1.23533 0.91722 0.93873 0.99569 1.23694 0.95134 0.99856 1.00434 1.77380 1.23976 0.95524 1.16255 0.92208 0.93344 0.94084 0.81439 0.82009 0.75863 0.76991 0.91179 0.91181 0.90988 0.91232 0.91007 0.91326 0.90937 0.91307 0.84614 0.89896 0.90741 0.90947 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 2 C 0.08 2.12 5.47 -17.82 -0.10 2.02 16 3 Si 0.87 20.18 27.47 -169.99 -4.67 15.51 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.26 -5.78 6.54 56.52 0.37 -5.41 16 7 C -0.53 -15.11 9.79 -34.44 -0.34 -15.45 16 8 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 9 C 0.23 5.54 5.33 -5.20 -0.03 5.51 16 10 N -0.32 -7.33 3.67 -62.57 -0.23 -7.56 16 11 C 0.05 0.98 11.44 -17.24 -0.20 0.79 16 12 C -0.28 -5.58 9.61 -39.83 -0.38 -5.96 16 13 C 0.28 5.61 8.11 -154.36 -1.25 4.36 16 14 N -0.64 -9.96 5.46 -15.50 -0.08 -10.05 16 15 C 0.71 10.33 8.53 -86.92 -0.74 9.58 16 16 O -0.57 -10.16 13.47 5.28 0.07 -10.09 16 17 N -0.74 -7.17 4.54 -65.22 -0.30 -7.46 16 18 C 0.16 1.42 4.57 -4.04 -0.02 1.40 16 19 C -0.10 -0.63 0.52 -152.29 -0.08 -0.71 16 20 C -0.12 -0.65 5.68 -25.15 -0.14 -0.80 16 21 C -0.12 -0.66 6.90 -24.78 -0.17 -0.83 16 22 C -0.13 -0.66 6.48 -25.11 -0.16 -0.82 16 23 C 0.08 0.53 3.89 -65.61 -0.26 0.27 16 24 H 0.10 0.70 7.84 -51.93 -0.41 0.29 16 25 N -0.67 -4.32 7.42 -100.74 -0.75 -5.07 16 26 C 0.04 0.27 7.61 -0.66 0.00 0.26 16 27 C -0.15 -0.89 6.07 -23.68 -0.14 -1.03 16 28 N -0.30 -6.93 12.42 31.44 0.39 -6.53 16 29 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.05 1.05 7.50 -51.93 -0.39 0.66 16 31 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 32 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.16 3.15 5.91 -52.49 -0.31 2.84 16 34 H 0.41 5.11 8.84 -40.82 -0.36 4.75 16 35 H 0.40 2.86 7.43 -40.82 -0.30 2.55 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.45 7.13 -51.93 -0.37 0.08 16 39 H 0.07 0.35 7.23 -51.93 -0.38 -0.03 16 40 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 41 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.07 0.31 7.29 -51.93 -0.38 -0.07 16 44 H 0.34 1.77 7.83 -39.29 -0.31 1.47 16 45 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 47 H 0.07 0.37 7.24 -51.93 -0.38 0.00 16 48 H 0.08 0.52 7.22 -51.93 -0.38 0.15 16 LS Contribution 379.23 15.07 5.71 5.71 Total: -1.00 -34.19 379.23 -10.39 -44.58 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.30 Total: 8.25 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -4.01 Total: -1.40 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.19 Total: -62.56 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.19 -10.39 -44.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.014 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds