Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48501 * 109.47088 * 270.27618 * 3 2 1 5 5 H 1.48495 * 109.47293 * 30.27820 * 3 2 1 6 6 H 1.48507 * 109.47015 * 150.27778 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.08000 * 119.99535 * 359.72167 * 7 2 1 9 9 C 1.50694 * 119.99902 * 179.72330 * 7 2 1 10 10 N 1.46497 * 109.47115 * 179.97438 * 9 7 2 11 11 C 1.34966 * 125.97780 * 124.71187 * 10 9 7 12 12 C 1.35250 * 107.85894 * 179.89399 * 11 10 9 13 13 C 1.40403 * 107.86439 * 0.37209 * 12 11 10 14 14 N 1.40203 * 125.96971 * 179.73326 * 13 12 11 15 15 C 1.34781 * 119.99787 * 0.02562 * 14 13 12 16 16 O 1.21593 * 120.00209 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99602 * 179.97438 * 15 14 13 18 18 C 1.46503 * 119.99752 * 180.02562 * 17 15 14 19 19 C 1.52998 * 109.46969 * 180.02562 * 18 17 15 20 20 C 1.54117 * 111.69245 * 298.98510 * 19 18 17 21 21 C 1.54883 * 104.15655 * 262.30072 * 20 19 18 22 22 C 1.54821 * 102.74315 * 321.54954 * 21 20 19 23 23 C 1.54266 * 104.42818 * 37.79185 * 22 21 20 24 24 H 1.09003 * 110.67659 * 98.36995 * 23 22 21 25 25 N 1.47921 * 109.43174 * 222.10497 * 23 22 21 26 26 C 1.48475 * 105.99133 * 139.78766 * 25 23 22 27 27 C 1.54446 * 111.72136 * 61.40791 * 19 18 17 28 28 N 1.31208 * 108.05695 * 359.77079 * 13 12 11 29 29 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 30 30 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 31 31 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 32 32 H 1.07995 * 126.07130 * 0.02562 * 11 10 9 33 33 H 1.07996 * 126.06491 * 180.13594 * 12 11 10 34 34 H 0.96994 * 119.99604 * 180.02562 * 14 13 12 35 35 H 0.96999 * 119.99925 * 0.02562 * 17 15 14 36 36 H 1.09006 * 109.47130 * 300.00137 * 18 17 15 37 37 H 1.08995 * 109.47196 * 60.00343 * 18 17 15 38 38 H 1.09001 * 110.48913 * 20.96999 * 20 19 18 39 39 H 1.08998 * 110.49423 * 143.63056 * 20 19 18 40 40 H 1.09007 * 110.75498 * 79.86362 * 21 20 19 41 41 H 1.08996 * 110.75741 * 203.23563 * 21 20 19 42 42 H 1.08999 * 110.44516 * 156.53049 * 22 21 20 43 43 H 1.09003 * 110.44083 * 279.05725 * 22 21 20 44 44 H 1.00903 * 110.99948 * 19.17055 * 25 23 22 45 45 H 1.08999 * 110.67314 * 79.22660 * 26 25 23 46 46 H 1.09003 * 110.66895 * 202.18892 * 26 25 23 47 47 H 1.09000 * 110.72594 * 217.34635 * 27 19 18 48 48 H 1.09004 * 110.71602 * 340.62102 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4909 2.0497 -1.4001 5 1 1.4497 2.6509 0.7059 6 1 3.5497 1.4383 0.6942 7 6 2.0046 -1.1941 -0.0058 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1941 -0.0121 10 7 3.9998 -2.5753 -0.0169 11 6 4.8467 -3.1138 -0.9193 12 6 5.0526 -4.4055 -0.5757 13 6 4.2960 -4.6704 0.5770 14 7 4.2268 -5.8969 1.2528 15 6 4.9293 -6.9552 0.8021 16 8 5.6234 -6.8462 -0.1903 17 7 4.8631 -8.1340 1.4520 18 6 5.6271 -9.2842 0.9624 19 6 5.3765 -10.4879 1.8731 20 6 5.8293 -10.2115 3.3201 21 6 7.2356 -10.8547 3.4063 22 6 7.0709 -12.1488 2.5727 23 6 6.1561 -11.7373 1.4007 24 1 6.7455 -11.5245 0.5088 25 7 5.1565 -12.8007 1.1599 26 6 3.8784 -12.1026 0.8705 27 6 3.8876 -10.8983 1.8812 28 7 3.6645 -3.5698 0.9108 29 1 -0.4849 0.8401 0.0041 30 1 3.8711 -0.6782 -0.9024 31 1 3.8785 -0.6825 0.8776 32 1 5.2841 -2.6031 -1.7645 33 1 5.6837 -5.1095 -1.0977 34 1 3.6734 -5.9837 2.0446 35 1 4.3096 -8.2209 2.2438 36 1 5.3110 -9.5250 -0.0526 37 1 6.6898 -9.0419 0.9642 38 1 5.8885 -9.1385 3.5030 39 1 5.1496 -10.6835 4.0295 40 1 7.9869 -10.2018 2.9619 41 1 7.4898 -11.0905 4.4397 42 1 8.0377 -12.4875 2.2003 43 1 6.5975 -12.9285 3.1696 44 1 5.0661 -13.4012 1.9657 45 1 3.8599 -11.7447 -0.1589 46 1 3.0295 -12.7586 1.0635 47 1 3.5815 -11.2199 2.8766 48 1 3.2600 -10.0795 1.5292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926038034.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = 35.359210 kcal Electronic energy + Delta-G solvation = -28234.807881 eV Core-core repulsion = 24325.324761 eV Total energy + Delta-G solvation = -3909.483120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.27191 -41.52616 -40.53225 -36.40861 -35.88012 -35.19756 -35.04661 -33.14472 -31.88797 -30.95828 -29.38133 -28.74245 -27.13875 -26.07954 -24.56996 -23.30965 -22.45705 -21.85311 -21.46445 -21.31204 -19.86120 -19.14943 -19.06773 -18.21720 -17.29103 -17.18958 -16.77561 -16.55868 -16.26911 -15.99686 -15.61669 -15.37615 -15.20760 -14.84299 -14.72444 -14.50928 -14.35670 -14.32634 -13.85318 -13.80819 -13.60905 -13.19452 -12.99191 -12.53065 -12.46156 -12.31116 -12.14547 -11.94082 -11.84200 -11.81919 -11.63696 -11.62948 -11.55935 -11.47236 -11.29781 -11.14117 -10.86456 -10.21759 -9.73667 -9.51538 -9.03791 -8.37075 -6.47121 1.03733 1.12347 1.37147 1.40295 1.49967 1.68986 2.09136 2.29481 2.39594 2.95347 3.06995 3.18321 3.43360 3.54692 3.86343 3.93943 4.06140 4.15023 4.21415 4.26889 4.29850 4.38195 4.47797 4.60666 4.61401 4.64959 4.70785 4.79099 4.84322 4.87334 4.93892 4.96567 5.00305 5.08452 5.10464 5.12034 5.18837 5.24586 5.27470 5.32010 5.44025 5.44755 5.78099 5.84453 5.92642 6.02363 6.42079 6.49827 6.57876 6.71213 7.11421 7.15965 7.40383 8.80002 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.001978 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.402314 B =14149.111445 C =14426.605176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.013 3.987 3 Si 0.956 3.044 4 H -0.253 1.253 5 H -0.281 1.281 6 H -0.239 1.239 7 C -0.546 4.546 8 H 0.026 0.974 9 C 0.239 3.761 10 N -0.345 5.345 11 C 0.061 3.939 12 C -0.294 4.294 13 C 0.285 3.715 14 N -0.638 5.638 15 C 0.712 3.288 16 O -0.601 6.601 17 N -0.718 5.718 18 C 0.164 3.836 19 C -0.093 4.093 20 C -0.115 4.115 21 C -0.124 4.124 22 C -0.123 4.123 23 C 0.083 3.917 24 H 0.082 0.918 25 N -0.677 5.677 26 C 0.041 3.959 27 C -0.147 4.147 28 N -0.349 5.349 29 H 0.272 0.728 30 H 0.082 0.918 31 H 0.046 0.954 32 H 0.210 0.790 33 H 0.167 0.833 34 H 0.419 0.581 35 H 0.411 0.589 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.346 0.654 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.783 -24.896 7.394 29.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.162 1.162 7 C -0.584 4.584 8 H 0.044 0.956 9 C 0.120 3.880 10 N -0.127 5.127 11 C -0.087 4.087 12 C -0.325 4.325 13 C 0.029 3.971 14 N -0.289 5.289 15 C 0.411 3.589 16 O -0.479 6.479 17 N -0.375 5.375 18 C 0.040 3.960 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.162 4.162 22 C -0.161 4.161 23 C -0.028 4.028 24 H 0.100 0.900 25 N -0.305 5.305 26 C -0.088 4.088 27 C -0.186 4.186 28 N -0.180 5.180 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.064 0.936 32 H 0.227 0.773 33 H 0.184 0.816 34 H 0.256 0.744 35 H 0.248 0.752 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.081 0.919 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.164 0.836 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.106 0.894 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 14.619 -24.285 6.627 29.110 hybrid contribution -0.711 0.742 0.898 1.365 sum 13.908 -23.543 7.525 28.361 Atomic orbital electron populations 1.70055 1.08560 1.28778 1.50719 1.25939 0.95795 1.03576 0.93261 0.85605 0.79505 0.77166 0.80040 1.17774 1.20631 1.16225 1.21233 0.90522 0.93703 1.52954 0.95573 1.19882 0.94125 0.74385 0.99637 1.48488 1.34503 1.09989 1.19743 1.23237 0.94433 0.94639 0.96411 1.21722 1.11947 0.97125 1.01705 1.19124 0.97269 0.86459 0.94285 1.41402 1.49826 1.06252 1.31469 1.15778 0.79917 0.80389 0.82808 1.90838 1.45372 1.83629 1.28067 1.44893 1.51958 1.08299 1.32327 1.21087 0.95238 0.82733 0.96893 1.22524 0.96700 0.94391 0.95877 1.22546 0.97379 1.01266 0.94053 1.22510 0.96754 0.96270 1.00623 1.22660 0.99978 0.97956 0.95532 1.22919 0.93310 0.88416 0.98142 0.90009 1.62661 1.06283 1.18188 1.43404 1.23511 0.92145 0.94299 0.98861 1.23672 0.94450 0.99410 1.01066 1.77298 1.26077 0.96702 1.17928 0.91902 0.90066 0.93647 0.77300 0.81604 0.74360 0.75189 0.92622 0.91886 0.91554 0.89917 0.91862 0.90330 0.90868 0.90179 0.83603 0.91474 0.89586 0.89408 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.21 13.96 21.45 0.30 -57.91 16 2 C 0.01 0.74 5.47 84.66 0.46 1.20 16 3 Si 0.96 40.80 27.47 68.60 1.88 42.69 16 4 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.24 -9.19 6.54 99.48 0.65 -8.54 16 7 C -0.55 -31.68 9.79 25.60 0.25 -31.43 16 8 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 9 C 0.24 11.16 5.33 85.63 0.46 11.61 16 10 N -0.35 -15.65 3.67 -351.86 -1.29 -16.94 16 11 C 0.06 2.29 11.44 83.52 0.96 3.24 16 12 C -0.29 -11.48 9.61 22.11 0.21 -11.27 16 13 C 0.28 11.52 8.11 133.31 1.08 12.60 16 14 N -0.64 -19.71 5.46 -321.22 -1.75 -21.46 16 15 C 0.71 20.45 8.53 179.05 1.53 21.97 16 16 O -0.60 -21.59 13.47 -4.01 -0.05 -21.65 16 17 N -0.72 -13.38 4.54 -478.52 -2.17 -15.55 16 18 C 0.16 2.82 4.57 86.38 0.39 3.21 16 19 C -0.09 -1.04 0.52 -50.74 -0.03 -1.06 16 20 C -0.11 -1.04 5.68 31.62 0.18 -0.86 16 21 C -0.12 -1.09 6.90 31.86 0.22 -0.87 16 22 C -0.12 -1.04 6.48 31.64 0.20 -0.84 16 23 C 0.08 0.96 3.89 45.72 0.18 1.14 16 24 H 0.08 1.19 7.84 -2.39 -0.02 1.17 16 25 N -0.68 -7.87 7.42 -472.62 -3.50 -11.37 16 26 C 0.04 0.48 7.61 87.49 0.67 1.14 16 27 C -0.15 -1.48 6.07 32.57 0.20 -1.29 16 28 N -0.35 -16.38 12.42 -54.43 -0.68 -17.06 16 29 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 30 H 0.08 3.25 7.50 -2.39 -0.02 3.23 16 31 H 0.05 2.07 7.20 -2.39 -0.02 2.05 16 32 H 0.21 5.79 8.06 -2.91 -0.02 5.77 16 33 H 0.17 6.38 5.91 -2.91 -0.02 6.36 16 34 H 0.42 10.46 8.84 -92.71 -0.82 9.64 16 35 H 0.41 5.38 7.43 -92.71 -0.69 4.69 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.07 0.70 7.13 -2.39 -0.02 0.68 16 39 H 0.08 0.58 7.23 -2.39 -0.02 0.56 16 40 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.08 0.52 7.29 -2.39 -0.02 0.50 16 44 H 0.35 2.95 7.83 -89.69 -0.70 2.25 16 45 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 47 H 0.09 0.66 7.24 -2.39 -0.02 0.64 16 48 H 0.07 0.86 7.22 -2.38 -0.02 0.84 16 Total: -1.00 -77.64 379.23 -1.56 -79.21 By element: Atomic # 1 Polarization: 32.81 SS G_CDS: -1.26 Total: 31.55 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.96 Total: 8.50 kcal Atomic # 7 Polarization: -131.20 SS G_CDS: -9.10 Total: -140.30 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.65 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 1.88 Total: 42.69 kcal Total: -77.64 -1.56 -79.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038034.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.566 kcal (2) G-P(sol) polarization free energy of solvation -77.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds