Wall clock time and date at job start Tue Mar 31 2020 18:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47098 * 299.99653 * 3 2 1 6 6 H 1.48502 * 109.47445 * 59.99629 * 3 2 1 7 7 C 1.37879 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99841 * 10 9 7 12 12 C 1.35240 * 107.85537 * 179.74003 * 11 10 9 13 13 C 1.40395 * 107.86992 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.97127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00263 * 179.97438 * 15 14 13 18 18 C 1.47081 * 125.62840 * 0.03269 * 17 15 14 19 19 C 1.54455 * 107.29384 * 180.94952 * 18 17 15 20 20 C 1.54411 * 102.87380 * 21.53110 * 19 18 17 21 21 C 1.47568 * 125.63391 * 179.71616 * 17 15 14 22 22 C 1.52139 * 110.42740 * 207.49301 * 20 19 18 23 23 C 1.53269 * 109.38359 * 293.54149 * 22 20 19 24 24 C 1.53129 * 109.06061 * 303.69133 * 23 22 20 25 25 C 1.53042 * 109.39292 * 58.32373 * 24 23 22 26 26 N 1.45870 * 110.59388 * 83.40865 * 20 19 18 27 27 N 1.31209 * 108.05705 * 0.02562 * 13 12 11 28 28 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46952 * 59.99825 * 9 7 2 30 30 H 1.09001 * 109.47222 * 300.00507 * 9 7 2 31 31 H 1.07999 * 126.07111 * 359.74034 * 11 10 9 32 32 H 1.08006 * 126.06031 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99920 * 180.02562 * 14 13 12 34 34 H 1.09003 * 109.87291 * 300.36866 * 18 17 15 35 35 H 1.08995 * 109.87922 * 61.52294 * 18 17 15 36 36 H 1.08994 * 110.73119 * 139.88327 * 19 18 17 37 37 H 1.09001 * 110.73026 * 263.00565 * 19 18 17 38 38 H 1.09002 * 110.37566 * 275.51980 * 21 17 15 39 39 H 1.09000 * 110.36992 * 37.86063 * 21 17 15 40 40 H 1.08996 * 109.49070 * 53.51919 * 22 20 19 41 41 H 1.09007 * 109.48572 * 173.57364 * 22 20 19 42 42 H 1.09008 * 109.53685 * 183.82216 * 23 22 20 43 43 H 1.08997 * 109.53870 * 63.57263 * 23 22 20 44 44 H 1.09003 * 109.48465 * 298.34865 * 24 23 22 45 45 H 1.08994 * 109.49788 * 178.30817 * 24 23 22 46 46 H 1.09003 * 109.47083 * 180.17243 * 25 24 23 47 47 H 1.08997 * 109.47483 * 60.16426 * 25 24 23 48 48 H 1.00900 * 110.99827 * 188.13776 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.2421 -4.6224 0.8952 12 6 3.2571 -5.4457 0.5473 13 6 3.8632 -4.9195 -0.6045 14 7 4.9558 -5.4734 -1.2864 15 6 5.5182 -6.6152 -0.8433 16 8 5.0777 -7.1652 0.1476 17 7 6.5682 -7.1480 -1.4991 18 6 7.1979 -6.5897 -2.7053 19 6 8.3401 -7.5466 -3.1119 20 6 7.9372 -8.8723 -2.4303 21 6 7.2802 -8.3843 -1.1217 22 6 9.1707 -9.7098 -2.1272 23 6 9.8165 -10.1589 -3.4427 24 6 8.7785 -10.9151 -4.2767 25 6 7.5751 -10.0059 -4.5364 26 7 6.9801 -9.6026 -3.2540 27 7 3.2291 -3.8180 -0.9307 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 1.5804 -4.7502 1.7391 32 1 3.5499 -6.3476 1.0645 33 1 5.3070 -5.0348 -2.0771 34 1 6.4650 -6.5246 -3.5096 35 1 7.6022 -5.6010 -2.4886 36 1 8.3771 -7.6651 -4.1947 37 1 9.2969 -7.1891 -2.7313 38 1 8.0397 -8.1703 -0.3696 39 1 6.5763 -9.1291 -0.7502 40 1 9.8835 -9.1142 -1.5569 41 1 8.8817 -10.5859 -1.5465 42 1 10.6605 -10.8148 -3.2291 43 1 10.1625 -9.2856 -3.9956 44 1 8.4531 -11.8029 -3.7344 45 1 9.2218 -11.2118 -5.2272 46 1 6.8340 -10.5441 -5.1275 47 1 7.9002 -9.1194 -5.0809 48 1 6.6124 -10.4012 -2.7590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926038043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:36 Heat of formation + Delta-G solvation = 61.185489 kcal Electronic energy + Delta-G solvation = -28523.476441 eV Core-core repulsion = 24615.113233 eV Total energy + Delta-G solvation = -3908.363208 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.04100 -40.36132 -39.09046 -36.37133 -34.61630 -33.31532 -32.25703 -32.03177 -30.68557 -30.11602 -29.20600 -27.11279 -26.27049 -24.22710 -23.38357 -22.88110 -21.98006 -20.99246 -20.12520 -19.76469 -18.97142 -17.83892 -16.79600 -16.53956 -16.29975 -16.07592 -15.47042 -15.27016 -15.14733 -14.71042 -14.59443 -14.32487 -14.02741 -13.78510 -13.65326 -13.09170 -13.06139 -12.83642 -12.67924 -12.43806 -12.27147 -12.18119 -12.05938 -11.75878 -11.68618 -11.49005 -11.34215 -11.01566 -10.95554 -10.84540 -10.77955 -10.34778 -10.22226 -9.98232 -9.59545 -9.41921 -8.76043 -8.67758 -8.59460 -8.01429 -7.32444 -6.20455 -4.25072 2.39235 2.75121 3.19887 3.24734 3.32088 3.38683 3.54037 3.69212 3.89774 3.94799 4.24411 4.26677 4.35459 4.38571 4.46438 4.61126 4.66347 4.82368 4.92132 5.01364 5.14608 5.19153 5.27144 5.33174 5.36021 5.42337 5.47172 5.52008 5.55791 5.57014 5.61787 5.62684 5.73731 5.84310 5.90020 6.03123 6.40543 6.62066 6.67929 6.77807 6.90293 6.98290 7.07756 7.18952 7.58510 7.74434 7.87901 8.03716 8.13752 8.69559 8.74128 8.86502 9.40285 10.88227 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.002111 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.665984 B =13261.366458 C =13730.795473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.321 5.321 11 C 0.050 3.950 12 C -0.286 4.286 13 C 0.278 3.722 14 N -0.641 5.641 15 C 0.733 3.267 16 O -0.568 6.568 17 N -0.626 5.626 18 C 0.105 3.895 19 C -0.117 4.117 20 C 0.102 3.898 21 C 0.143 3.857 22 C -0.140 4.140 23 C -0.118 4.118 24 C -0.159 4.159 25 C 0.056 3.944 26 N -0.666 5.666 27 N -0.309 5.309 28 H 0.266 0.734 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.167 0.833 32 H 0.160 0.840 33 H 0.406 0.594 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.076 0.924 48 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.653 -21.713 -8.023 30.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.142 4.142 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.564 4.564 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.099 4.099 12 C -0.317 4.317 13 C 0.024 3.976 14 N -0.291 5.291 15 C 0.435 3.565 16 O -0.444 6.444 17 N -0.365 5.365 18 C -0.019 4.019 19 C -0.155 4.155 20 C 0.009 3.991 21 C 0.019 3.981 22 C -0.180 4.180 23 C -0.155 4.155 24 C -0.198 4.198 25 C -0.074 4.074 26 N -0.296 5.296 27 N -0.140 5.140 28 H 0.076 0.924 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.095 0.905 47 H 0.094 0.906 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 18.626 -20.303 -8.328 28.784 hybrid contribution 1.201 -0.186 0.354 1.266 sum 19.827 -20.489 -7.975 29.606 Atomic orbital electron populations 1.69928 1.06025 1.27446 1.50022 1.24952 0.94987 0.99543 0.94714 0.86280 0.80064 0.82519 0.77670 1.19587 1.20726 1.20803 1.21309 0.94038 0.89399 1.51661 0.91265 1.19725 0.85640 0.81335 0.99215 1.49032 1.23417 1.19746 1.18133 1.22540 1.00359 0.90253 0.96798 1.21507 1.02157 1.06373 1.01710 1.18785 0.90705 0.93931 0.94219 1.41369 1.31681 1.24854 1.31181 1.15059 0.78990 0.80091 0.82380 1.90857 1.64082 1.62708 1.26767 1.47300 1.32441 1.27141 1.29581 1.21976 0.95331 0.96883 0.87672 1.22648 0.97724 0.93458 1.01640 1.21427 0.90797 0.93767 0.93066 1.21984 0.95366 0.85967 0.94741 1.22008 0.97622 1.00369 0.97988 1.21564 0.97865 1.00253 0.95864 1.22267 0.97809 0.99170 1.00586 1.22098 0.94891 0.98418 0.91969 1.60252 1.34765 1.29261 1.05316 1.77319 1.04082 1.16272 1.16322 0.92432 0.93786 0.92560 0.81570 0.82237 0.75957 0.91161 0.91711 0.89554 0.90160 0.91086 0.90097 0.90798 0.91498 0.91876 0.91591 0.92002 0.91467 0.90513 0.90556 0.83612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 13.29 55.43 0.74 -24.92 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -14.88 9.24 -34.44 -0.32 -15.19 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.26 6.72 6.26 -5.19 -0.03 6.68 16 10 N -0.32 -7.72 3.67 -62.56 -0.23 -7.95 16 11 C 0.05 1.05 11.44 -17.24 -0.20 0.85 16 12 C -0.29 -6.01 9.60 -39.84 -0.38 -6.39 16 13 C 0.28 5.91 8.11 -154.36 -1.25 4.66 16 14 N -0.64 -11.01 5.41 -15.51 -0.08 -11.09 16 15 C 0.73 12.02 8.46 -86.92 -0.74 11.28 16 16 O -0.57 -11.04 13.74 5.29 0.07 -10.97 16 17 N -0.63 -7.44 3.33 -176.34 -0.59 -8.03 16 18 C 0.10 0.92 6.15 -2.96 -0.02 0.90 16 19 C -0.12 -0.74 5.09 -25.23 -0.13 -0.87 16 20 C 0.10 0.68 0.65 -131.15 -0.08 0.59 16 21 C 0.14 1.35 6.03 -2.75 -0.02 1.34 16 22 C -0.14 -0.72 4.81 -27.03 -0.13 -0.85 16 23 C -0.12 -0.53 5.81 -26.53 -0.15 -0.69 16 24 C -0.16 -0.72 6.06 -26.64 -0.16 -0.88 16 25 C 0.06 0.30 6.36 -3.74 -0.02 0.28 16 26 N -0.67 -4.68 6.34 -99.49 -0.63 -5.31 16 27 N -0.31 -7.39 12.42 31.44 0.39 -7.00 16 28 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 29 H 0.04 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 32 H 0.16 3.30 5.91 -52.48 -0.31 2.99 16 33 H 0.41 5.93 7.81 -40.82 -0.32 5.61 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.49 6.01 -51.93 -0.31 0.18 16 37 H 0.08 0.43 7.95 -51.93 -0.41 0.02 16 38 H 0.07 0.63 8.00 -51.93 -0.42 0.21 16 39 H 0.08 0.86 8.02 -51.93 -0.42 0.44 16 40 H 0.07 0.36 8.06 -51.93 -0.42 -0.06 16 41 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 43 H 0.07 0.30 7.58 -51.93 -0.39 -0.10 16 44 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 46 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.08 0.42 6.17 -51.93 -0.32 0.10 16 48 H 0.34 2.33 8.83 -39.29 -0.35 1.98 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -33.46 380.32 -10.79 -44.25 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -7.43 Total: 5.36 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.73 Total: 3.32 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: -0.40 Total: -64.30 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.46 -10.79 -44.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.436 kcal (2) G-P(sol) polarization free energy of solvation -33.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds