Wall clock time and date at job start Tue Mar 31 2020 18:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86799 * 119.99858 * 2 1 4 4 H 1.48501 * 109.47084 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47098 * 299.99653 * 3 2 1 6 6 H 1.48502 * 109.47445 * 59.99629 * 3 2 1 7 7 C 1.37879 * 120.00319 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00112 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00029 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.47588 * 179.97438 * 9 7 2 11 11 C 1.34964 * 125.97606 * 124.99841 * 10 9 7 12 12 C 1.35240 * 107.85537 * 179.74003 * 11 10 9 13 13 C 1.40395 * 107.86992 * 0.02562 * 12 11 10 14 14 N 1.40199 * 125.97127 * 179.97438 * 13 12 11 15 15 C 1.34775 * 120.00135 * 0.02562 * 14 13 12 16 16 O 1.21589 * 119.99978 * 0.02562 * 15 14 13 17 17 N 1.34778 * 120.00263 * 179.97438 * 15 14 13 18 18 C 1.47081 * 125.62840 * 0.03269 * 17 15 14 19 19 C 1.54455 * 107.29384 * 180.94952 * 18 17 15 20 20 C 1.54411 * 102.87380 * 21.53110 * 19 18 17 21 21 C 1.47568 * 125.63391 * 179.71616 * 17 15 14 22 22 C 1.52139 * 110.42740 * 207.49301 * 20 19 18 23 23 C 1.53269 * 109.38359 * 293.54149 * 22 20 19 24 24 C 1.53129 * 109.06061 * 303.69133 * 23 22 20 25 25 C 1.53042 * 109.39292 * 58.32373 * 24 23 22 26 26 N 1.45870 * 110.59388 * 83.40865 * 20 19 18 27 27 N 1.31209 * 108.05705 * 0.02562 * 13 12 11 28 28 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46952 * 59.99825 * 9 7 2 30 30 H 1.09001 * 109.47222 * 300.00507 * 9 7 2 31 31 H 1.07999 * 126.07111 * 359.74034 * 11 10 9 32 32 H 1.08006 * 126.06031 * 179.97438 * 12 11 10 33 33 H 0.97001 * 119.99920 * 180.02562 * 14 13 12 34 34 H 1.09003 * 109.87291 * 300.36866 * 18 17 15 35 35 H 1.08995 * 109.87922 * 61.52294 * 18 17 15 36 36 H 1.08994 * 110.73119 * 139.88327 * 19 18 17 37 37 H 1.09001 * 110.73026 * 263.00565 * 19 18 17 38 38 H 1.09002 * 110.37566 * 275.51980 * 21 17 15 39 39 H 1.09000 * 110.36992 * 37.86063 * 21 17 15 40 40 H 1.08996 * 109.49070 * 53.51919 * 22 20 19 41 41 H 1.09007 * 109.48572 * 173.57364 * 22 20 19 42 42 H 1.09008 * 109.53685 * 183.82216 * 23 22 20 43 43 H 1.08997 * 109.53870 * 63.57263 * 23 22 20 44 44 H 1.09003 * 109.48465 * 298.34865 * 24 23 22 45 45 H 1.08994 * 109.49788 * 178.30817 * 24 23 22 46 46 H 1.09003 * 109.47083 * 180.17243 * 25 24 23 47 47 H 1.08997 * 109.47483 * 60.16426 * 25 24 23 48 48 H 1.00900 * 110.99827 * 188.13776 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.2421 -4.6224 0.8952 12 6 3.2571 -5.4457 0.5473 13 6 3.8632 -4.9195 -0.6045 14 7 4.9558 -5.4734 -1.2864 15 6 5.5182 -6.6152 -0.8433 16 8 5.0777 -7.1652 0.1476 17 7 6.5682 -7.1480 -1.4991 18 6 7.1979 -6.5897 -2.7053 19 6 8.3401 -7.5466 -3.1119 20 6 7.9372 -8.8723 -2.4303 21 6 7.2802 -8.3843 -1.1217 22 6 9.1707 -9.7098 -2.1272 23 6 9.8165 -10.1589 -3.4427 24 6 8.7785 -10.9151 -4.2767 25 6 7.5751 -10.0059 -4.5364 26 7 6.9801 -9.6026 -3.2540 27 7 3.2291 -3.8180 -0.9307 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 1.5804 -4.7502 1.7391 32 1 3.5499 -6.3476 1.0645 33 1 5.3070 -5.0348 -2.0771 34 1 6.4650 -6.5246 -3.5096 35 1 7.6022 -5.6010 -2.4886 36 1 8.3771 -7.6651 -4.1947 37 1 9.2969 -7.1891 -2.7313 38 1 8.0397 -8.1703 -0.3696 39 1 6.5763 -9.1291 -0.7502 40 1 9.8835 -9.1142 -1.5569 41 1 8.8817 -10.5859 -1.5465 42 1 10.6605 -10.8148 -3.2291 43 1 10.1625 -9.2856 -3.9956 44 1 8.4531 -11.8029 -3.7344 45 1 9.2218 -11.2118 -5.2272 46 1 6.8340 -10.5441 -5.1275 47 1 7.9002 -9.1194 -5.0809 48 1 6.6124 -10.4012 -2.7590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926038043.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:35 Heat of formation + Delta-G solvation = 39.001773 kcal Electronic energy + Delta-G solvation = -28524.438399 eV Core-core repulsion = 24615.113233 eV Total energy + Delta-G solvation = -3909.325166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.27134 -41.54430 -40.21921 -37.19379 -36.19841 -35.25502 -33.13948 -32.67921 -32.18816 -30.93242 -30.79240 -28.66386 -27.41162 -25.20711 -24.58903 -23.88688 -22.84616 -22.21315 -21.61535 -20.76480 -19.94293 -18.94212 -18.67369 -18.10069 -17.40867 -17.05464 -16.67753 -16.45702 -16.21669 -15.84804 -15.61886 -15.45422 -15.05681 -14.81540 -14.53202 -14.35114 -14.24089 -13.87480 -13.78292 -13.71780 -13.57603 -13.46326 -12.92743 -12.86312 -12.72427 -12.61388 -12.30245 -12.22982 -12.05641 -11.99672 -11.86069 -11.63241 -11.39424 -11.36529 -11.24744 -11.07926 -10.71575 -9.83130 -9.63905 -9.21301 -9.01634 -8.32009 -6.46095 1.06249 1.12136 1.37746 1.38856 1.52310 1.70377 2.05261 2.36199 2.40939 2.91028 2.99326 3.17278 3.38911 3.63585 3.91349 3.97805 4.03248 4.18613 4.22802 4.27564 4.28397 4.42170 4.54331 4.58294 4.66565 4.72979 4.75935 4.84132 4.89035 4.94158 4.95582 4.96273 5.02146 5.04802 5.12866 5.14426 5.17368 5.20967 5.25578 5.40636 5.46510 5.57681 5.78003 5.90459 5.97645 6.20698 6.30373 6.45895 6.62947 6.70284 7.11822 7.23697 7.40456 8.75646 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025069 B = 0.002111 C = 0.002039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.665984 B =13261.366458 C =13730.795473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.017 3.983 3 Si 0.973 3.027 4 H -0.275 1.275 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.546 4.546 8 H 0.051 0.949 9 C 0.272 3.728 10 N -0.344 5.344 11 C 0.058 3.942 12 C -0.293 4.293 13 C 0.285 3.715 14 N -0.636 5.636 15 C 0.727 3.273 16 O -0.603 6.603 17 N -0.618 5.618 18 C 0.097 3.903 19 C -0.109 4.109 20 C 0.112 3.888 21 C 0.136 3.864 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.154 4.154 25 C 0.057 3.943 26 N -0.682 5.682 27 N -0.348 5.348 28 H 0.272 0.728 29 H 0.021 0.979 30 H 0.060 0.940 31 H 0.202 0.798 32 H 0.165 0.835 33 H 0.416 0.584 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.078 0.922 48 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.780 -22.039 -8.588 32.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.797 3.203 4 H -0.200 1.200 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.091 4.091 12 C -0.325 4.325 13 C 0.030 3.970 14 N -0.287 5.287 15 C 0.429 3.571 16 O -0.482 6.482 17 N -0.355 5.355 18 C -0.026 4.026 19 C -0.146 4.146 20 C 0.020 3.980 21 C 0.013 3.987 22 C -0.175 4.175 23 C -0.153 4.153 24 C -0.193 4.193 25 C -0.071 4.071 26 N -0.312 5.312 27 N -0.179 5.179 28 H 0.082 0.918 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.219 0.781 32 H 0.182 0.818 33 H 0.253 0.747 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.097 0.903 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 20.804 -20.665 -8.934 30.654 hybrid contribution 0.587 -0.222 0.503 0.804 sum 21.391 -20.887 -8.431 31.063 Atomic orbital electron populations 1.70001 1.07193 1.28692 1.50057 1.25757 0.95878 1.02763 0.93937 0.85280 0.78354 0.78319 0.78320 1.19965 1.19779 1.19483 1.21423 0.93346 0.90970 1.52648 0.93033 1.19349 0.85666 0.81496 0.98133 1.48821 1.23980 1.20348 1.19490 1.23146 1.00379 0.88777 0.96750 1.21667 1.02360 1.06589 1.01860 1.19080 0.90860 0.92982 0.94111 1.41381 1.30779 1.25198 1.31337 1.15251 0.79778 0.79708 0.82393 1.90816 1.65456 1.63499 1.28430 1.47378 1.30887 1.27462 1.29733 1.22236 0.96057 0.98036 0.86235 1.22683 0.97286 0.92268 1.02408 1.21333 0.91008 0.94204 0.91500 1.22238 0.95075 0.84649 0.96737 1.21963 0.96843 1.00107 0.98575 1.21558 0.97848 1.00545 0.95328 1.22211 0.97372 0.98799 1.00958 1.22103 0.95249 0.98698 0.91092 1.60262 1.35423 1.29574 1.05987 1.77240 1.05209 1.17957 1.17528 0.91843 0.96074 0.92263 0.78079 0.81770 0.74671 0.91384 0.90770 0.88321 0.88444 0.90165 0.91609 0.90062 0.91610 0.91289 0.91066 0.92295 0.90725 0.90607 0.90341 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.79 13.29 21.45 0.28 -52.51 16 2 C 0.02 0.95 5.46 84.66 0.46 1.41 16 3 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.55 -31.41 9.24 25.60 0.24 -31.17 16 8 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 9 C 0.27 14.49 6.26 85.63 0.54 15.03 16 10 N -0.34 -16.84 3.67 -351.84 -1.29 -18.13 16 11 C 0.06 2.41 11.44 83.52 0.96 3.37 16 12 C -0.29 -12.35 9.60 22.10 0.21 -12.14 16 13 C 0.29 12.27 8.11 133.31 1.08 13.35 16 14 N -0.64 -21.86 5.41 -321.24 -1.74 -23.60 16 15 C 0.73 23.77 8.46 179.05 1.51 25.28 16 16 O -0.60 -23.63 13.74 -3.99 -0.05 -23.69 16 17 N -0.62 -14.20 3.33 -830.09 -2.77 -16.97 16 18 C 0.10 1.54 6.15 86.76 0.53 2.08 16 19 C -0.11 -1.10 5.09 31.57 0.16 -0.94 16 20 C 0.11 1.29 0.65 4.38 0.00 1.29 16 21 C 0.14 2.44 6.03 86.63 0.52 2.96 16 22 C -0.14 -1.07 4.81 30.40 0.15 -0.92 16 23 C -0.12 -0.73 5.81 30.73 0.18 -0.55 16 24 C -0.15 -1.06 6.06 30.65 0.19 -0.87 16 25 C 0.06 0.52 6.36 86.30 0.55 1.07 16 26 N -0.68 -8.71 6.34 -468.68 -2.97 -11.68 16 27 N -0.35 -17.01 12.42 -54.44 -0.68 -17.68 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.02 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.06 3.07 8.07 -2.39 -0.02 3.05 16 31 H 0.20 6.61 8.06 -2.91 -0.02 6.58 16 32 H 0.17 6.80 5.91 -2.91 -0.02 6.79 16 33 H 0.42 12.12 7.81 -92.71 -0.72 11.39 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.10 0.82 6.01 -2.39 -0.01 0.80 16 37 H 0.10 0.70 7.95 -2.39 -0.02 0.69 16 38 H 0.08 1.31 8.00 -2.39 -0.02 1.29 16 39 H 0.07 1.39 8.02 -2.39 -0.02 1.37 16 40 H 0.08 0.56 8.06 -2.39 -0.02 0.54 16 41 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 42 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.07 0.40 7.58 -2.39 -0.02 0.39 16 44 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.08 0.69 6.17 -2.39 -0.01 0.67 16 48 H 0.34 4.41 8.83 -89.69 -0.79 3.62 16 Total: -1.00 -72.51 380.32 -0.43 -72.94 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: -0.53 Total: 25.82 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 7.28 Total: 19.24 kcal Atomic # 7 Polarization: -131.40 SS G_CDS: -9.16 Total: -140.56 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.69 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -72.51 -0.43 -72.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038043.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.946 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds