Wall clock time and date at job start Tue Mar 31 2020 18:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47232 * 239.99764 * 3 2 1 5 5 H 1.48500 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47056 * 119.99849 * 3 2 1 7 7 C 1.37875 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00323 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47468 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97825 * 124.99906 * 10 9 7 12 12 C 1.35244 * 107.85763 * 180.02562 * 11 10 9 13 13 C 1.40406 * 107.86784 * 359.97438 * 12 11 10 14 14 N 1.40202 * 125.97037 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99689 * 0.02562 * 14 13 12 16 16 O 1.21586 * 120.00529 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99263 * 180.02562 * 15 14 13 18 18 C 1.47477 * 125.66543 * 0.02562 * 17 15 14 19 19 C 1.55027 * 104.89561 * 203.99981 * 18 17 15 20 20 C 1.54548 * 101.53332 * 323.58256 * 19 18 17 21 21 C 1.47173 * 125.65866 * 180.02562 * 17 15 14 22 22 C 1.52294 * 110.12929 * 153.14594 * 20 19 18 23 23 C 1.53232 * 109.40629 * 65.35829 * 22 20 19 24 24 C 1.53129 * 109.07931 * 56.49739 * 23 22 20 25 25 C 1.53038 * 109.34929 * 301.73528 * 24 23 22 26 26 N 1.46043 * 110.25387 * 276.37448 * 20 19 18 27 27 N 1.31203 * 108.05549 * 0.26848 * 13 12 11 28 28 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47316 * 60.00430 * 9 7 2 30 30 H 1.08999 * 109.47697 * 299.99989 * 9 7 2 31 31 H 1.07992 * 126.06864 * 0.02562 * 11 10 9 32 32 H 1.07995 * 126.06508 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99314 * 180.02562 * 14 13 12 34 34 H 1.09003 * 110.35728 * 322.84870 * 18 17 15 35 35 H 1.08996 * 110.35402 * 85.14302 * 18 17 15 36 36 H 1.09000 * 111.00753 * 205.52392 * 19 18 17 37 37 H 1.09000 * 111.00969 * 81.64832 * 19 18 17 38 38 H 1.08993 * 109.90745 * 59.17444 * 21 17 15 39 39 H 1.09004 * 110.05652 * 298.00300 * 21 17 15 40 40 H 1.09000 * 109.48403 * 185.34069 * 22 20 19 41 41 H 1.09003 * 109.48136 * 305.36377 * 22 20 19 42 42 H 1.09004 * 109.53878 * 176.38221 * 23 22 20 43 43 H 1.09005 * 109.53795 * 296.53439 * 23 22 20 44 44 H 1.08997 * 109.48873 * 181.77168 * 24 23 22 45 45 H 1.09000 * 109.49078 * 61.70049 * 24 23 22 46 46 H 1.09002 * 109.47429 * 299.78492 * 25 24 23 47 47 H 1.09001 * 109.46774 * 179.78549 * 25 24 23 48 48 H 1.00903 * 110.99691 * 61.41938 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6225 0.8952 12 6 3.2611 -5.4424 0.5510 13 6 3.8690 -4.9145 -0.5993 14 7 4.9651 -5.4655 -1.2780 15 6 5.5294 -6.6057 -0.8330 16 8 5.0882 -7.1563 0.1572 17 7 6.5834 -7.1350 -1.4853 18 6 7.2178 -6.5736 -2.6925 19 6 7.9049 -7.7814 -3.3799 20 6 8.3933 -8.5946 -2.1598 21 6 7.2923 -8.3692 -1.1109 22 6 8.4944 -10.0708 -2.5203 23 6 9.5850 -10.2627 -3.5794 24 6 10.9045 -9.6965 -3.0475 25 6 10.7203 -8.2160 -2.7067 26 7 9.6731 -8.0750 -1.6854 27 7 3.2354 -3.8128 -0.9249 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 1.5777 -4.7525 1.7366 32 1 3.5545 -6.3437 1.0685 33 1 5.3172 -5.0260 -2.0678 34 1 6.4642 -6.1412 -3.3506 35 1 7.9581 -5.8225 -2.4172 36 1 8.7445 -7.4558 -3.9940 37 1 7.1895 -8.3539 -3.9703 38 1 6.5994 -9.2105 -1.1134 39 1 7.7385 -8.2589 -0.1225 40 1 8.7474 -10.6461 -1.6296 41 1 7.5387 -10.4147 -2.9158 42 1 9.7036 -11.3252 -3.7922 43 1 9.3032 -9.7375 -4.4921 44 1 11.6781 -9.8012 -3.8082 45 1 11.1993 -10.2421 -2.1511 46 1 10.4287 -7.6701 -3.6040 47 1 11.6576 -7.8119 -2.3242 48 1 9.5854 -7.1150 -1.3874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000926038044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:39 Heat of formation + Delta-G solvation = 62.954372 kcal Electronic energy + Delta-G solvation = -28475.243321 eV Core-core repulsion = 24566.956817 eV Total energy + Delta-G solvation = -3908.286503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15419 -40.41285 -39.12158 -36.32395 -34.70608 -33.35393 -32.55978 -32.00436 -30.72125 -30.05998 -29.25914 -27.11415 -26.27433 -24.34834 -23.45551 -22.94758 -22.05759 -21.05354 -20.18266 -19.49150 -18.89492 -17.96937 -16.88706 -16.62155 -16.53797 -16.21826 -15.62852 -15.29266 -15.00540 -14.74532 -14.49542 -14.28371 -14.07889 -13.79680 -13.63277 -13.27849 -13.10396 -13.03491 -12.72307 -12.64728 -12.28677 -12.19001 -12.06102 -11.88491 -11.73554 -11.35879 -11.06979 -11.04712 -10.89109 -10.85425 -10.73550 -10.42365 -10.24122 -10.05509 -9.66497 -9.48563 -8.86620 -8.85547 -8.61320 -8.07498 -7.38604 -6.22710 -4.27701 2.27287 2.67827 3.12233 3.26228 3.29339 3.33513 3.44968 3.61334 3.85170 4.02227 4.08888 4.21518 4.33477 4.35508 4.48511 4.61120 4.72156 4.81061 4.85947 5.01011 5.12186 5.15703 5.18204 5.24041 5.37216 5.43239 5.49419 5.53403 5.53878 5.56575 5.63346 5.68679 5.79310 5.83851 5.91753 5.95245 6.32617 6.56712 6.64502 6.68320 6.84660 6.92830 7.01878 7.12297 7.51447 7.70902 7.82230 7.96528 8.09094 8.59164 8.68368 8.82369 9.37626 10.85909 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002120 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.547196 B =13206.528632 C =13957.344322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.062 3.938 3 Si 0.908 3.092 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.068 0.932 9 C 0.259 3.741 10 N -0.321 5.321 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.276 3.724 14 N -0.642 5.642 15 C 0.732 3.268 16 O -0.563 6.563 17 N -0.636 5.636 18 C 0.094 3.906 19 C -0.164 4.164 20 C 0.110 3.890 21 C 0.138 3.862 22 C -0.101 4.101 23 C -0.121 4.121 24 C -0.118 4.118 25 C 0.055 3.945 26 N -0.673 5.673 27 N -0.308 5.308 28 H 0.267 0.733 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.071 0.929 46 H 0.035 0.965 47 H 0.076 0.924 48 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.077 -19.786 -8.042 29.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.566 4.566 8 H 0.086 0.914 9 C 0.141 3.859 10 N -0.103 5.103 11 C -0.098 4.098 12 C -0.317 4.317 13 C 0.022 3.978 14 N -0.292 5.292 15 C 0.433 3.567 16 O -0.438 6.438 17 N -0.376 5.376 18 C -0.029 4.029 19 C -0.204 4.204 20 C 0.018 3.982 21 C 0.015 3.985 22 C -0.139 4.139 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.074 4.074 26 N -0.305 5.305 27 N -0.139 5.139 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.053 0.947 47 H 0.094 0.906 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 19.528 -19.542 -7.744 28.692 hybrid contribution 0.338 1.402 -0.560 1.547 sum 19.866 -18.141 -8.304 28.155 Atomic orbital electron populations 1.69910 1.06017 1.27698 1.49758 1.24947 0.94994 0.99526 0.94655 0.86383 0.79369 0.81815 0.78895 1.19984 1.21056 1.20050 1.21220 0.93951 0.89416 1.52046 0.91383 1.19726 0.85607 0.81284 0.99235 1.49055 1.23080 1.19773 1.18344 1.22551 1.00290 0.90282 0.96724 1.21512 1.02050 1.06486 1.01700 1.18781 0.90664 0.94021 0.94367 1.41387 1.31505 1.24958 1.31314 1.15063 0.79050 0.80187 0.82378 1.90876 1.63937 1.62522 1.26417 1.47524 1.32460 1.27544 1.30054 1.22354 0.97310 0.96527 0.86728 1.23495 1.01181 0.97122 0.98588 1.21349 0.88880 0.95597 0.92408 1.21770 0.92295 0.86138 0.98335 1.21430 0.99277 0.93523 0.99652 1.21600 0.95016 1.01096 0.98129 1.21591 0.97250 0.95557 1.01235 1.21988 0.94922 0.96920 0.93536 1.60173 1.05048 1.26117 1.39138 1.77317 1.03815 1.16141 1.16650 0.92294 0.93777 0.92529 0.81499 0.82208 0.76000 0.90483 0.91485 0.89500 0.89741 0.90593 0.90180 0.90653 0.91042 0.91608 0.92051 0.91670 0.91032 0.94675 0.90595 0.83408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.47 13.29 55.43 0.74 -24.73 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.91 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 7 C -0.53 -14.81 9.23 -34.44 -0.32 -15.13 16 8 H 0.07 1.97 7.81 -52.48 -0.41 1.56 16 9 C 0.26 6.66 6.26 -5.20 -0.03 6.63 16 10 N -0.32 -7.59 3.67 -62.56 -0.23 -7.82 16 11 C 0.05 1.06 11.44 -17.24 -0.20 0.86 16 12 C -0.29 -5.90 9.61 -39.83 -0.38 -6.28 16 13 C 0.28 5.74 8.11 -154.36 -1.25 4.48 16 14 N -0.64 -10.60 5.41 -15.51 -0.08 -10.68 16 15 C 0.73 11.58 8.46 -86.92 -0.74 10.85 16 16 O -0.56 -10.73 13.80 5.29 0.07 -10.66 16 17 N -0.64 -7.18 3.33 -176.38 -0.59 -7.77 16 18 C 0.09 0.75 6.28 -2.44 -0.02 0.73 16 19 C -0.16 -1.01 5.11 -24.85 -0.13 -1.14 16 20 C 0.11 0.75 0.73 -131.24 -0.10 0.65 16 21 C 0.14 1.33 6.13 -3.30 -0.02 1.31 16 22 C -0.10 -0.60 4.69 -26.97 -0.13 -0.73 16 23 C -0.12 -0.60 5.80 -26.54 -0.15 -0.76 16 24 C -0.12 -0.59 6.07 -26.64 -0.16 -0.76 16 25 C 0.06 0.29 6.34 -3.77 -0.02 0.27 16 26 N -0.67 -4.50 6.30 -99.60 -0.63 -5.13 16 27 N -0.31 -7.24 12.42 31.44 0.39 -6.85 16 28 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.43 8.07 -51.93 -0.42 1.01 16 31 H 0.17 2.80 8.06 -52.49 -0.42 2.37 16 32 H 0.16 3.25 5.91 -52.49 -0.31 2.94 16 33 H 0.40 5.60 7.31 -40.82 -0.30 5.30 16 34 H 0.08 0.58 7.30 -51.93 -0.38 0.21 16 35 H 0.07 0.48 7.91 -51.93 -0.41 0.07 16 36 H 0.09 0.45 5.93 -51.93 -0.31 0.14 16 37 H 0.08 0.53 7.97 -51.93 -0.41 0.11 16 38 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 39 H 0.08 0.86 8.03 -51.93 -0.42 0.45 16 40 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 43 H 0.06 0.30 7.53 -51.93 -0.39 -0.09 16 44 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.04 0.17 6.10 -51.93 -0.32 -0.14 16 47 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.35 2.39 8.24 -39.29 -0.32 2.06 16 LS Contribution 377.99 15.07 5.70 5.70 Total: -1.00 -32.78 377.99 -10.71 -43.48 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.32 Total: 5.41 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -3.74 Total: 2.60 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -0.40 Total: -62.99 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.07 Total: -10.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.78 -10.71 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.439 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds