Wall clock time and date at job start Tue Mar 31 2020 18:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99936 * 2 1 4 4 H 1.48495 * 109.47232 * 239.99764 * 3 2 1 5 5 H 1.48500 * 109.47217 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47056 * 119.99849 * 3 2 1 7 7 C 1.37875 * 119.99766 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99819 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00323 * 0.02562 * 7 2 1 10 10 N 1.46504 * 109.47468 * 179.97438 * 9 7 2 11 11 C 1.34967 * 125.97825 * 124.99906 * 10 9 7 12 12 C 1.35244 * 107.85763 * 180.02562 * 11 10 9 13 13 C 1.40406 * 107.86784 * 359.97438 * 12 11 10 14 14 N 1.40202 * 125.97037 * 180.02562 * 13 12 11 15 15 C 1.34776 * 119.99689 * 0.02562 * 14 13 12 16 16 O 1.21586 * 120.00529 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99263 * 180.02562 * 15 14 13 18 18 C 1.47477 * 125.66543 * 0.02562 * 17 15 14 19 19 C 1.55027 * 104.89561 * 203.99981 * 18 17 15 20 20 C 1.54548 * 101.53332 * 323.58256 * 19 18 17 21 21 C 1.47173 * 125.65866 * 180.02562 * 17 15 14 22 22 C 1.52294 * 110.12929 * 153.14594 * 20 19 18 23 23 C 1.53232 * 109.40629 * 65.35829 * 22 20 19 24 24 C 1.53129 * 109.07931 * 56.49739 * 23 22 20 25 25 C 1.53038 * 109.34929 * 301.73528 * 24 23 22 26 26 N 1.46043 * 110.25387 * 276.37448 * 20 19 18 27 27 N 1.31203 * 108.05549 * 0.26848 * 13 12 11 28 28 H 0.96997 * 120.00216 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47316 * 60.00430 * 9 7 2 30 30 H 1.08999 * 109.47697 * 299.99989 * 9 7 2 31 31 H 1.07992 * 126.06864 * 0.02562 * 11 10 9 32 32 H 1.07995 * 126.06508 * 180.02562 * 12 11 10 33 33 H 0.97001 * 119.99314 * 180.02562 * 14 13 12 34 34 H 1.09003 * 110.35728 * 322.84870 * 18 17 15 35 35 H 1.08996 * 110.35402 * 85.14302 * 18 17 15 36 36 H 1.09000 * 111.00753 * 205.52392 * 19 18 17 37 37 H 1.09000 * 111.00969 * 81.64832 * 19 18 17 38 38 H 1.08993 * 109.90745 * 59.17444 * 21 17 15 39 39 H 1.09004 * 110.05652 * 298.00300 * 21 17 15 40 40 H 1.09000 * 109.48403 * 185.34069 * 22 20 19 41 41 H 1.09003 * 109.48136 * 305.36377 * 22 20 19 42 42 H 1.09004 * 109.53878 * 176.38221 * 23 22 20 43 43 H 1.09005 * 109.53795 * 296.53439 * 23 22 20 44 44 H 1.08997 * 109.48873 * 181.77168 * 24 23 22 45 45 H 1.09000 * 109.49078 * 61.70049 * 24 23 22 46 46 H 1.09002 * 109.47429 * 299.78492 * 25 24 23 47 47 H 1.09001 * 109.46774 * 179.78549 * 25 24 23 48 48 H 1.00903 * 110.99691 * 61.41938 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.2421 -4.6225 0.8952 12 6 3.2611 -5.4424 0.5510 13 6 3.8690 -4.9145 -0.5993 14 7 4.9651 -5.4655 -1.2780 15 6 5.5294 -6.6057 -0.8330 16 8 5.0882 -7.1563 0.1572 17 7 6.5834 -7.1350 -1.4853 18 6 7.2178 -6.5736 -2.6925 19 6 7.9049 -7.7814 -3.3799 20 6 8.3933 -8.5946 -2.1598 21 6 7.2923 -8.3692 -1.1109 22 6 8.4944 -10.0708 -2.5203 23 6 9.5850 -10.2627 -3.5794 24 6 10.9045 -9.6965 -3.0475 25 6 10.7203 -8.2160 -2.7067 26 7 9.6731 -8.0750 -1.6854 27 7 3.2354 -3.8128 -0.9249 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6240 -2.5568 0.8902 31 1 1.5777 -4.7525 1.7366 32 1 3.5545 -6.3437 1.0685 33 1 5.3172 -5.0260 -2.0678 34 1 6.4642 -6.1412 -3.3506 35 1 7.9581 -5.8225 -2.4172 36 1 8.7445 -7.4558 -3.9940 37 1 7.1895 -8.3539 -3.9703 38 1 6.5994 -9.2105 -1.1134 39 1 7.7385 -8.2589 -0.1225 40 1 8.7474 -10.6461 -1.6296 41 1 7.5387 -10.4147 -2.9158 42 1 9.7036 -11.3252 -3.7922 43 1 9.3032 -9.7375 -4.4921 44 1 11.6781 -9.8012 -3.8082 45 1 11.1993 -10.2421 -2.1511 46 1 10.4287 -7.6701 -3.6040 47 1 11.6576 -7.8119 -2.3242 48 1 9.5854 -7.1150 -1.3874 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926038044.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:38 Heat of formation + Delta-G solvation = 41.488299 kcal Electronic energy + Delta-G solvation = -28476.174160 eV Core-core repulsion = 24566.956817 eV Total energy + Delta-G solvation = -3909.217342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.32729 -41.63270 -40.24064 -37.11937 -36.24528 -35.27589 -33.22560 -32.91298 -32.18619 -30.95433 -30.72344 -28.68035 -27.38613 -25.23890 -24.66692 -23.98326 -22.93172 -22.27185 -21.65886 -20.70247 -19.64874 -18.98244 -18.67898 -18.14306 -17.41348 -17.27809 -16.96180 -16.49786 -16.26389 -15.90151 -15.61000 -15.33746 -15.15532 -14.65502 -14.53965 -14.33622 -14.16175 -14.03819 -13.83640 -13.70187 -13.61889 -13.53169 -13.28729 -12.94264 -12.72580 -12.62248 -12.40984 -12.28345 -12.09709 -11.86865 -11.67001 -11.49919 -11.41628 -11.35607 -11.20066 -11.12024 -10.71851 -9.92463 -9.70214 -9.34573 -9.05576 -8.32477 -6.46670 1.00571 1.07186 1.38235 1.40185 1.49002 1.66106 1.99686 2.35118 2.35787 2.84521 2.98988 3.08412 3.44101 3.52388 3.82758 3.95216 4.08008 4.09380 4.21224 4.25549 4.30297 4.35910 4.47795 4.57032 4.65166 4.67519 4.73296 4.84743 4.86874 4.89452 4.93418 4.95701 5.00486 5.04609 5.07748 5.11026 5.15056 5.25816 5.32596 5.36436 5.53318 5.56296 5.73282 5.85364 5.94077 6.15789 6.28356 6.41525 6.57941 6.66758 7.08046 7.22970 7.33482 8.74815 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.023513 B = 0.002120 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.547196 B =13206.528632 C =13957.344322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.018 3.982 3 Si 0.972 3.028 4 H -0.273 1.273 5 H -0.273 1.273 6 H -0.270 1.270 7 C -0.548 4.548 8 H 0.052 0.948 9 C 0.273 3.727 10 N -0.344 5.344 11 C 0.059 3.941 12 C -0.294 4.294 13 C 0.284 3.716 14 N -0.634 5.634 15 C 0.727 3.273 16 O -0.599 6.599 17 N -0.626 5.626 18 C 0.086 3.914 19 C -0.153 4.153 20 C 0.120 3.880 21 C 0.135 3.865 22 C -0.100 4.100 23 C -0.117 4.117 24 C -0.118 4.118 25 C 0.055 3.945 26 N -0.682 5.682 27 N -0.346 5.346 28 H 0.273 0.727 29 H 0.022 0.978 30 H 0.059 0.941 31 H 0.202 0.798 32 H 0.165 0.835 33 H 0.417 0.583 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.080 0.920 48 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.923 -19.984 -9.092 31.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.183 4.183 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.198 1.198 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.070 0.930 9 C 0.154 3.846 10 N -0.126 5.126 11 C -0.090 4.090 12 C -0.325 4.325 13 C 0.029 3.971 14 N -0.286 5.286 15 C 0.429 3.571 16 O -0.477 6.477 17 N -0.364 5.364 18 C -0.036 4.036 19 C -0.192 4.192 20 C 0.027 3.973 21 C 0.012 3.988 22 C -0.139 4.139 23 C -0.155 4.155 24 C -0.156 4.156 25 C -0.074 4.074 26 N -0.314 5.314 27 N -0.177 5.177 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.219 0.781 32 H 0.182 0.818 33 H 0.255 0.745 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.124 0.876 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.063 0.937 47 H 0.098 0.902 48 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 21.430 -19.772 -8.837 30.467 hybrid contribution -0.150 1.325 -0.233 1.353 sum 21.280 -18.448 -9.070 29.587 Atomic orbital electron populations 1.69989 1.07185 1.28825 1.49870 1.25749 0.95875 1.02732 0.93920 0.85398 0.78281 0.77842 0.78899 1.19807 1.19773 1.19533 1.21363 0.93355 0.90968 1.52890 0.92984 1.19345 0.85650 0.81459 0.98151 1.48834 1.23668 1.20353 1.19730 1.23148 1.00348 0.88842 0.96666 1.21671 1.02248 1.06684 1.01896 1.19065 0.90835 0.93035 0.94204 1.41364 1.30523 1.25229 1.31493 1.15230 0.79787 0.79800 0.82305 1.90837 1.65364 1.63381 1.28163 1.47536 1.30870 1.27646 1.30359 1.22654 0.97742 0.97667 0.85511 1.23470 1.01614 0.95987 0.98170 1.21238 0.88077 0.96377 0.91558 1.21910 0.92887 0.85144 0.98875 1.21436 0.99999 0.92618 0.99813 1.21589 0.94430 1.01671 0.97814 1.21594 0.97628 0.95157 1.01175 1.22053 0.94563 0.97288 0.93456 1.60167 1.05174 1.26063 1.39989 1.77238 1.04889 1.17809 1.17812 0.91834 0.96017 0.92295 0.78100 0.81787 0.74539 0.89825 0.90147 0.87633 0.89327 0.91146 0.91558 0.91478 0.90737 0.91000 0.91323 0.90406 0.92083 0.93713 0.90198 0.83596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.40 13.29 21.45 0.28 -52.12 16 2 C 0.02 0.98 5.46 84.65 0.46 1.44 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.82 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 7 C -0.55 -31.18 9.23 25.60 0.24 -30.94 16 8 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.27 14.33 6.26 85.63 0.54 14.87 16 10 N -0.34 -16.52 3.67 -351.85 -1.29 -17.81 16 11 C 0.06 2.39 11.44 83.52 0.96 3.34 16 12 C -0.29 -12.10 9.61 22.11 0.21 -11.89 16 13 C 0.28 11.87 8.11 133.31 1.08 12.95 16 14 N -0.63 -20.76 5.41 -321.23 -1.74 -22.49 16 15 C 0.73 22.83 8.46 179.05 1.51 24.34 16 16 O -0.60 -23.04 13.80 -3.99 -0.06 -23.10 16 17 N -0.63 -13.60 3.33 -830.19 -2.77 -16.37 16 18 C 0.09 1.19 6.28 86.89 0.55 1.74 16 19 C -0.15 -1.49 5.11 31.81 0.16 -1.32 16 20 C 0.12 1.44 0.73 4.23 0.00 1.45 16 21 C 0.13 2.53 6.13 86.49 0.53 3.06 16 22 C -0.10 -1.04 4.69 30.44 0.14 -0.90 16 23 C -0.12 -0.89 5.80 30.71 0.18 -0.71 16 24 C -0.12 -0.91 6.07 30.65 0.19 -0.73 16 25 C 0.05 0.45 6.34 86.30 0.55 1.00 16 26 N -0.68 -8.00 6.30 -469.03 -2.96 -10.95 16 27 N -0.35 -16.52 12.42 -54.43 -0.68 -17.20 16 28 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 29 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 3.02 8.07 -2.39 -0.02 3.00 16 31 H 0.20 6.49 8.06 -2.91 -0.02 6.46 16 32 H 0.16 6.68 5.91 -2.91 -0.02 6.66 16 33 H 0.42 11.24 7.31 -92.71 -0.68 10.57 16 34 H 0.08 1.09 7.30 -2.39 -0.02 1.07 16 35 H 0.08 0.96 7.91 -2.39 -0.02 0.94 16 36 H 0.11 0.71 5.93 -2.39 -0.01 0.69 16 37 H 0.09 0.85 7.97 -2.39 -0.02 0.83 16 38 H 0.07 1.41 7.79 -2.39 -0.02 1.39 16 39 H 0.07 1.44 8.03 -2.39 -0.02 1.42 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 42 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.07 0.45 7.53 -2.38 -0.02 0.43 16 44 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 45 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.04 0.30 6.10 -2.39 -0.01 0.28 16 47 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 48 H 0.34 4.20 8.24 -89.69 -0.74 3.46 16 Total: -1.00 -71.04 377.99 -0.30 -71.34 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -0.42 Total: 25.20 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 7.29 Total: 17.69 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -9.14 Total: -136.95 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.06 Total: -23.10 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.04 -0.30 -71.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926038044.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.828 kcal (2) G-P(sol) polarization free energy of solvation -71.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds