Wall clock time and date at job start Tue Mar 31 2020 18:07:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47290 * 299.99776 * 3 2 1 6 6 H 1.48505 * 109.47502 * 60.00002 * 3 2 1 7 7 C 1.37872 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00508 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99687 * 170.00092 * 10 9 7 12 12 C 1.53241 * 109.33739 * 187.25651 * 11 10 9 13 13 N 1.47083 * 108.52067 * 306.17040 * 12 11 10 14 14 C 1.34778 * 120.87986 * 231.18949 * 13 12 11 15 15 O 1.21608 * 119.99742 * 184.99753 * 14 13 12 16 16 N 1.34775 * 120.00236 * 4.99337 * 14 13 12 17 17 C 1.40846 * 120.00080 * 174.78876 * 16 14 13 18 18 C 1.40234 * 126.07356 * 359.95912 * 17 16 14 19 19 N 1.30842 * 108.34179 * 180.02562 * 18 17 16 20 20 N 1.40076 * 108.35996 * 359.77879 * 19 18 17 21 21 C 1.46498 * 126.05439 * 180.27250 * 20 19 18 22 22 C 1.53786 * 113.60966 * 194.24458 * 21 20 19 23 23 C 1.53953 * 87.01761 * 220.04664 * 22 21 20 24 24 C 1.53780 * 87.11472 * 25.36547 * 23 22 21 25 25 C 1.35729 * 126.07344 * 179.97438 * 17 16 14 26 26 C 1.47081 * 118.23759 * 51.45543 * 13 12 11 27 27 C 1.46897 * 111.00175 * 294.30205 * 10 9 7 28 28 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 59.99904 * 9 7 2 30 30 H 1.08998 * 109.47385 * 300.00089 * 9 7 2 31 31 H 1.08998 * 109.49581 * 67.30089 * 11 10 9 32 32 H 1.09000 * 109.49467 * 307.21164 * 11 10 9 33 33 H 1.09001 * 109.62772 * 186.46185 * 12 11 10 34 34 H 1.08998 * 109.62867 * 65.88099 * 12 11 10 35 35 H 0.96999 * 119.99818 * 354.78537 * 16 14 13 36 36 H 1.08004 * 125.82933 * 0.02562 * 18 17 16 37 37 H 1.08993 * 112.85483 * 325.43710 * 21 20 19 38 38 H 1.08994 * 113.61441 * 334.56420 * 22 21 20 39 39 H 1.08998 * 113.61294 * 105.47494 * 22 21 20 40 40 H 1.08994 * 113.54179 * 270.81051 * 23 22 21 41 41 H 1.09005 * 113.74312 * 139.94819 * 23 22 21 42 42 H 1.08999 * 113.61717 * 220.09295 * 24 23 22 43 43 H 1.08998 * 113.61673 * 89.18185 * 24 23 22 44 44 H 1.07998 * 126.22151 * 359.93223 * 25 17 16 45 45 H 1.09000 * 109.62463 * 68.25271 * 26 13 12 46 46 H 1.08995 * 109.62691 * 188.83090 * 26 13 12 47 47 H 1.09002 * 109.49275 * 292.70980 * 27 10 9 48 48 H 1.09006 * 109.49173 * 52.78692 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0032 0.4115 13 7 3.4616 -5.9862 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 4.5259 -7.1001 -2.3535 16 7 3.0600 -8.2521 -1.1459 17 6 3.2390 -9.3999 -1.9423 18 6 4.0595 -9.4991 -3.0752 19 7 3.9659 -10.7163 -3.5461 20 7 3.0873 -11.4391 -2.7290 21 6 2.7081 -12.8436 -2.9012 22 6 1.4805 -13.2563 -2.0719 23 6 2.2147 -14.5802 -1.7922 24 6 3.5260 -13.8136 -2.0322 25 6 2.6478 -10.6064 -1.7498 26 6 4.0838 -4.7090 -1.1338 27 6 2.9768 -3.6491 -1.2493 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 0.8796 -5.1264 -0.6112 32 1 0.9159 -4.8191 1.1422 33 1 2.0631 -6.9694 0.4739 34 1 3.1393 -5.8265 1.3201 35 1 2.4677 -8.2819 -0.3784 36 1 4.6653 -8.7062 -3.4885 37 1 2.6474 -13.1405 -3.9482 38 1 1.3288 -12.6448 -1.1825 39 1 0.5734 -13.3758 -2.6644 40 1 2.0181 -15.3525 -2.5357 41 1 2.0993 -14.9384 -0.7692 42 1 4.2680 -14.3822 -2.5928 43 1 3.9346 -13.3547 -1.1319 44 1 1.9572 -10.8597 -0.9591 45 1 4.8026 -4.4103 -0.3709 46 1 4.5886 -4.8192 -2.0935 47 1 2.3149 -3.8993 -2.0785 48 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934299724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:25 Heat of formation + Delta-G solvation = 100.029402 kcal Electronic energy + Delta-G solvation = -28261.242986 eV Core-core repulsion = 24354.564176 eV Total energy + Delta-G solvation = -3906.678810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59784 -40.21227 -38.83677 -37.62654 -34.78271 -34.38926 -32.41689 -31.47036 -30.80023 -29.39389 -28.00408 -26.29220 -25.68230 -25.21033 -23.37264 -22.46190 -21.90003 -21.52528 -20.43217 -19.81749 -19.05203 -18.09112 -17.71220 -16.42116 -16.25092 -16.04031 -15.60109 -15.21236 -14.93392 -14.67473 -14.52757 -14.45658 -13.90498 -13.85505 -13.55908 -13.44599 -13.28791 -13.13182 -12.74166 -12.62823 -12.26911 -12.04196 -11.83990 -11.33915 -11.28306 -11.18697 -11.14409 -10.87838 -10.78065 -10.77113 -10.69112 -10.61207 -10.53121 -9.96301 -9.86553 -9.45569 -9.28040 -8.57085 -8.47112 -7.70565 -7.34902 -6.07680 -4.09378 1.66404 2.16904 2.64593 2.71960 3.28997 3.36801 3.41291 3.43082 3.74806 3.87272 3.95023 4.21670 4.25103 4.38098 4.54193 4.72825 4.81194 5.01105 5.08804 5.13155 5.15036 5.26410 5.28889 5.31675 5.31818 5.35660 5.37370 5.50362 5.57166 5.63768 5.77100 5.80728 5.90406 6.00166 6.14323 6.16842 6.39484 6.53897 6.65441 6.78032 6.90751 6.97590 7.19614 7.26248 7.62062 7.72930 7.91218 7.98915 8.09865 8.45585 8.58077 8.98278 9.55454 11.03179 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.001973 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.526523 B =14190.114243 C =14675.128536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.117 3.883 13 N -0.621 5.621 14 C 0.711 3.289 15 O -0.584 6.584 16 N -0.663 5.663 17 C 0.031 3.969 18 C 0.053 3.947 19 N -0.288 5.288 20 N -0.365 5.365 21 C 0.144 3.856 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.149 4.149 25 C 0.005 3.995 26 C 0.133 3.867 27 C 0.050 3.950 28 H 0.261 0.739 29 H -0.009 1.009 30 H 0.031 0.969 31 H 0.027 0.973 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.404 0.596 36 H 0.207 0.793 37 H 0.121 0.879 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.172 0.828 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.025 0.975 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.614 -27.855 -0.779 27.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.068 3.932 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.007 4.007 13 N -0.357 5.357 14 C 0.413 3.587 15 O -0.462 6.462 16 N -0.313 5.313 17 C -0.074 4.074 18 C -0.135 4.135 19 N -0.109 5.109 20 N -0.150 5.150 21 C 0.042 3.958 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.187 4.187 25 C -0.142 4.142 26 C 0.011 3.989 27 C -0.079 4.079 28 H 0.071 0.929 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.100 0.900 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.241 0.759 36 H 0.223 0.777 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.189 0.811 45 H 0.091 0.909 46 H 0.109 0.891 47 H 0.044 0.956 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.720 -28.488 -1.958 28.796 hybrid contribution -1.032 1.448 0.553 1.862 sum 2.689 -27.040 -1.405 27.209 Atomic orbital electron populations 1.69968 1.06098 1.26752 1.50937 1.24996 0.94875 0.99407 0.95350 0.86433 0.80108 0.83329 0.77504 1.19574 1.21116 1.21032 1.21180 0.93571 0.89825 1.50155 0.91669 1.19733 0.90003 0.87232 0.96184 1.62082 1.27873 1.02408 1.33622 1.22385 0.94696 0.90949 1.00931 1.21812 0.91929 0.98207 0.88706 1.47399 1.49379 1.07754 1.31197 1.15670 0.81023 0.79872 0.82133 1.90773 1.37586 1.84087 1.33769 1.42063 1.49142 1.08467 1.31618 1.17497 1.05098 0.87202 0.97643 1.24539 0.99655 0.94884 0.94377 1.77375 1.11541 1.05092 1.16881 1.48349 1.35757 1.09392 1.21492 1.22896 0.96263 0.75480 1.01171 1.23442 0.97041 0.97449 1.00508 1.22735 0.95670 0.96160 1.03005 1.23460 0.97545 0.97236 1.00504 1.21602 1.04694 0.90033 0.97841 1.21882 0.95390 0.80170 1.01470 1.22467 0.95193 0.99236 0.91027 0.92941 0.99097 0.95047 0.95464 0.90035 0.91363 0.90336 0.75851 0.77698 0.86156 0.88904 0.89886 0.89368 0.90201 0.90276 0.89284 0.81093 0.90937 0.89146 0.95640 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.14 13.29 55.43 0.74 -25.40 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.51 -13.78 8.41 -34.44 -0.29 -14.07 16 8 H 0.07 1.74 7.13 -52.48 -0.37 1.37 16 9 C 0.19 4.82 4.72 -4.98 -0.02 4.80 16 10 N -0.53 -10.76 4.62 -235.47 -1.09 -11.85 16 11 C 0.04 0.64 5.62 -3.70 -0.02 0.62 16 12 C 0.12 1.47 6.59 -3.60 -0.02 1.45 16 13 N -0.62 -9.15 3.00 -177.90 -0.53 -9.69 16 14 C 0.71 10.84 8.28 -86.92 -0.72 10.12 16 15 O -0.58 -10.49 13.00 5.27 0.07 -10.42 16 16 N -0.66 -8.04 5.39 -14.39 -0.08 -8.12 16 17 C 0.03 0.39 6.90 -83.86 -0.58 -0.19 16 18 C 0.05 0.77 10.84 -17.22 -0.19 0.58 16 19 N -0.29 -3.99 12.57 30.70 0.39 -3.61 16 20 N -0.36 -3.87 3.83 -53.74 -0.21 -4.07 16 21 C 0.14 1.02 5.03 -67.11 -0.34 0.68 16 22 C -0.15 -0.66 7.46 -25.83 -0.19 -0.85 16 23 C -0.14 -0.50 8.09 -25.83 -0.21 -0.71 16 24 C -0.15 -0.84 7.88 -25.92 -0.20 -1.05 16 25 C 0.01 0.05 10.75 -16.67 -0.18 -0.13 16 26 C 0.13 2.14 6.61 -3.37 -0.02 2.11 16 27 C 0.05 0.94 5.47 -3.47 -0.02 0.92 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 30 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 1.24 7.99 -51.93 -0.41 0.82 16 33 H 0.07 0.62 5.64 -51.93 -0.29 0.33 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.40 3.68 6.32 -40.82 -0.26 3.42 16 36 H 0.21 3.25 5.93 -52.48 -0.31 2.93 16 37 H 0.12 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.09 0.39 6.33 -51.93 -0.33 0.06 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.17 1.06 6.72 -52.49 -0.35 0.71 16 45 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 46 H 0.09 1.45 7.09 -51.93 -0.37 1.08 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -33.21 380.29 -10.35 -43.57 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -7.25 Total: 1.95 kcal Atomic # 6 Polarization: 8.82 SS G_CDS: -3.10 Total: 5.71 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: -0.78 Total: -62.74 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: 0.07 Total: -10.42 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.21 -10.35 -43.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934299724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.597 kcal (2) G-P(sol) polarization free energy of solvation -33.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds