Wall clock time and date at job start Tue Mar 31 2020 18:07:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99831 * 2 1 4 4 H 1.48501 * 109.46924 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47290 * 299.99776 * 3 2 1 6 6 H 1.48505 * 109.47502 * 60.00002 * 3 2 1 7 7 C 1.37872 * 119.99699 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99947 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00508 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47377 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99687 * 170.00092 * 10 9 7 12 12 C 1.53241 * 109.33739 * 187.25651 * 11 10 9 13 13 N 1.47083 * 108.52067 * 306.17040 * 12 11 10 14 14 C 1.34778 * 120.87986 * 231.18949 * 13 12 11 15 15 O 1.21608 * 119.99742 * 184.99753 * 14 13 12 16 16 N 1.34775 * 120.00236 * 4.99337 * 14 13 12 17 17 C 1.40846 * 120.00080 * 174.78876 * 16 14 13 18 18 C 1.40234 * 126.07356 * 359.95912 * 17 16 14 19 19 N 1.30842 * 108.34179 * 180.02562 * 18 17 16 20 20 N 1.40076 * 108.35996 * 359.77879 * 19 18 17 21 21 C 1.46498 * 126.05439 * 180.27250 * 20 19 18 22 22 C 1.53786 * 113.60966 * 194.24458 * 21 20 19 23 23 C 1.53953 * 87.01761 * 220.04664 * 22 21 20 24 24 C 1.53780 * 87.11472 * 25.36547 * 23 22 21 25 25 C 1.35729 * 126.07344 * 179.97438 * 17 16 14 26 26 C 1.47081 * 118.23759 * 51.45543 * 13 12 11 27 27 C 1.46897 * 111.00175 * 294.30205 * 10 9 7 28 28 H 0.97003 * 119.99570 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47022 * 59.99904 * 9 7 2 30 30 H 1.08998 * 109.47385 * 300.00089 * 9 7 2 31 31 H 1.08998 * 109.49581 * 67.30089 * 11 10 9 32 32 H 1.09000 * 109.49467 * 307.21164 * 11 10 9 33 33 H 1.09001 * 109.62772 * 186.46185 * 12 11 10 34 34 H 1.08998 * 109.62867 * 65.88099 * 12 11 10 35 35 H 0.96999 * 119.99818 * 354.78537 * 16 14 13 36 36 H 1.08004 * 125.82933 * 0.02562 * 18 17 16 37 37 H 1.08993 * 112.85483 * 325.43710 * 21 20 19 38 38 H 1.08994 * 113.61441 * 334.56420 * 22 21 20 39 39 H 1.08998 * 113.61294 * 105.47494 * 22 21 20 40 40 H 1.08994 * 113.54179 * 270.81051 * 23 22 21 41 41 H 1.09005 * 113.74312 * 139.94819 * 23 22 21 42 42 H 1.08999 * 113.61717 * 220.09295 * 24 23 22 43 43 H 1.08998 * 113.61673 * 89.18185 * 24 23 22 44 44 H 1.07998 * 126.22151 * 359.93223 * 25 17 16 45 45 H 1.09000 * 109.62463 * 68.25271 * 26 13 12 46 46 H 1.08995 * 109.62691 * 188.83090 * 26 13 12 47 47 H 1.09002 * 109.49275 * 292.70980 * 27 10 9 48 48 H 1.09006 * 109.49173 * 52.78692 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2057 -3.6157 0.0005 11 6 1.5211 -4.8935 0.2387 12 6 2.5637 -6.0032 0.4115 13 7 3.4616 -5.9862 -0.7533 14 6 3.7118 -7.1124 -1.4502 15 8 4.5259 -7.1001 -2.3535 16 7 3.0600 -8.2521 -1.1459 17 6 3.2390 -9.3999 -1.9423 18 6 4.0595 -9.4991 -3.0752 19 7 3.9659 -10.7163 -3.5461 20 7 3.0873 -11.4391 -2.7290 21 6 2.7081 -12.8436 -2.9012 22 6 1.4805 -13.2563 -2.0719 23 6 2.2147 -14.5802 -1.7922 24 6 3.5260 -13.8136 -2.0322 25 6 2.6478 -10.6064 -1.7498 26 6 4.0838 -4.7090 -1.1338 27 6 2.9768 -3.6491 -1.2493 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6240 -2.5567 0.8902 31 1 0.8796 -5.1264 -0.6112 32 1 0.9159 -4.8191 1.1422 33 1 2.0631 -6.9694 0.4739 34 1 3.1393 -5.8265 1.3201 35 1 2.4677 -8.2819 -0.3784 36 1 4.6653 -8.7062 -3.4885 37 1 2.6474 -13.1405 -3.9482 38 1 1.3288 -12.6448 -1.1825 39 1 0.5734 -13.3758 -2.6644 40 1 2.0181 -15.3525 -2.5357 41 1 2.0993 -14.9384 -0.7692 42 1 4.2680 -14.3822 -2.5928 43 1 3.9346 -13.3547 -1.1319 44 1 1.9572 -10.8597 -0.9591 45 1 4.8026 -4.4103 -0.3709 46 1 4.5886 -4.8192 -2.0935 47 1 2.3149 -3.8993 -2.0785 48 1 3.4272 -2.6722 -1.4250 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934299724.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:24 Heat of formation + Delta-G solvation = 77.395854 kcal Electronic energy + Delta-G solvation = -28262.224450 eV Core-core repulsion = 24354.564176 eV Total energy + Delta-G solvation = -3907.660274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.49406 -41.31641 -39.48762 -38.93251 -36.04443 -35.74909 -34.35101 -32.32476 -32.08102 -30.54577 -29.51199 -27.23331 -26.67217 -25.99176 -24.70272 -24.02966 -22.93380 -22.60886 -21.64513 -20.56341 -20.03324 -19.09696 -18.69489 -18.41301 -17.18421 -16.83384 -16.73783 -16.53048 -16.13593 -15.93281 -15.79701 -15.47473 -15.36937 -15.20662 -15.00319 -14.47693 -14.04919 -14.00131 -13.91990 -13.53485 -13.36609 -13.21936 -13.06615 -12.73454 -12.59184 -12.38572 -12.32633 -12.27025 -12.14104 -11.90883 -11.82457 -11.72341 -11.45903 -11.39906 -11.31502 -11.08911 -10.61271 -10.32161 -9.82148 -9.05170 -8.62490 -8.19997 -6.29270 0.81142 1.30751 1.42505 1.43714 1.56725 1.57767 1.72308 2.32795 2.41577 2.83011 3.12763 3.24410 3.32987 3.54123 3.79078 3.85450 3.86319 3.95415 4.03521 4.07638 4.14338 4.27636 4.45999 4.49242 4.53670 4.59811 4.64069 4.73579 4.74117 4.80114 4.86787 4.97162 4.99179 5.00531 5.04121 5.08609 5.16627 5.19344 5.25334 5.39114 5.46140 5.65394 5.80150 5.87962 6.04958 6.13121 6.26870 6.60014 6.67382 6.86759 6.89162 7.40558 7.46127 8.91211 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.001973 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.526523 B =14190.114243 C =14675.128536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.262 1.262 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.537 5.537 11 C 0.037 3.963 12 C 0.125 3.875 13 N -0.623 5.623 14 C 0.707 3.293 15 O -0.617 6.617 16 N -0.645 5.645 17 C 0.001 3.999 18 C 0.029 3.971 19 N -0.320 5.320 20 N -0.357 5.357 21 C 0.122 3.878 22 C -0.137 4.137 23 C -0.124 4.124 24 C -0.149 4.149 25 C 0.035 3.965 26 C 0.146 3.854 27 C 0.056 3.944 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.013 0.987 31 H 0.019 0.981 32 H 0.092 0.908 33 H 0.112 0.888 34 H 0.091 0.909 35 H 0.420 0.580 36 H 0.183 0.817 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.076 0.924 43 H 0.082 0.918 44 H 0.217 0.783 45 H 0.082 0.918 46 H 0.087 0.913 47 H 0.009 0.991 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.255 -30.158 0.894 30.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.186 1.186 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.560 4.560 8 H 0.084 0.916 9 C 0.082 3.918 10 N -0.262 5.262 11 C -0.093 4.093 12 C 0.002 3.998 13 N -0.360 5.360 14 C 0.408 3.592 15 O -0.497 6.497 16 N -0.297 5.297 17 C -0.104 4.104 18 C -0.157 4.157 19 N -0.142 5.142 20 N -0.141 5.141 21 C 0.021 3.979 22 C -0.175 4.175 23 C -0.162 4.162 24 C -0.188 4.188 25 C -0.114 4.114 26 C 0.023 3.977 27 C -0.073 4.073 28 H 0.072 0.928 29 H -0.024 1.024 30 H 0.031 0.969 31 H 0.037 0.963 32 H 0.110 0.890 33 H 0.130 0.870 34 H 0.109 0.891 35 H 0.261 0.739 36 H 0.199 0.801 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.234 0.766 45 H 0.100 0.900 46 H 0.105 0.895 47 H 0.027 0.973 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.356 -30.852 -0.271 31.035 hybrid contribution -0.967 1.987 -0.009 2.210 sum 2.388 -28.865 -0.280 28.965 Atomic orbital electron populations 1.70087 1.07686 1.27771 1.51957 1.25887 0.95716 1.03142 0.94920 0.85356 0.79109 0.78744 0.77543 1.18595 1.20817 1.20440 1.21510 0.93772 0.90985 1.49704 0.91592 1.19382 0.90034 0.88800 0.93610 1.62000 1.27031 1.03110 1.34075 1.22541 0.95778 0.89955 1.00977 1.21919 0.90901 0.98793 0.88155 1.47376 1.49665 1.07130 1.31786 1.15803 0.81050 0.80569 0.81731 1.90771 1.39124 1.84694 1.35137 1.41761 1.48645 1.07386 1.31864 1.17646 1.06486 0.88345 0.97962 1.24293 1.00707 0.94921 0.95791 1.77307 1.13273 1.05286 1.18338 1.48794 1.34210 1.10436 1.20679 1.23446 0.98581 0.73757 1.02126 1.23480 0.96158 0.97600 1.00268 1.22714 0.93513 0.95886 1.04106 1.23457 0.98495 0.97082 0.99739 1.22233 1.03195 0.88453 0.97486 1.21622 0.94207 0.80089 1.01799 1.22377 0.95456 0.99482 0.89975 0.92764 1.02447 0.96933 0.96311 0.89010 0.87043 0.89055 0.73925 0.80071 0.86204 0.87877 0.88915 0.88296 0.88965 0.90517 0.89976 0.76643 0.90022 0.89457 0.97252 0.90176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.17 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.97 43.79 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 7 C -0.52 -28.78 8.41 25.60 0.22 -28.56 16 8 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 9 C 0.21 10.71 4.72 85.55 0.40 11.11 16 10 N -0.54 -21.82 4.62 -898.88 -4.15 -25.98 16 11 C 0.04 1.14 5.62 86.38 0.49 1.62 16 12 C 0.12 2.81 6.59 86.35 0.57 3.38 16 13 N -0.62 -17.60 3.00 -835.02 -2.51 -20.10 16 14 C 0.71 20.97 8.28 179.05 1.48 22.45 16 15 O -0.62 -22.63 13.00 -4.06 -0.05 -22.68 16 16 N -0.65 -14.35 5.39 -317.70 -1.71 -16.06 16 17 C 0.00 0.01 6.90 37.59 0.26 0.27 16 18 C 0.03 0.86 10.84 85.33 0.92 1.79 16 19 N -0.32 -8.96 12.57 -56.78 -0.71 -9.67 16 20 N -0.36 -6.97 3.83 -323.92 -1.24 -8.21 16 21 C 0.12 1.45 5.03 45.52 0.23 1.68 16 22 C -0.14 -0.73 7.46 31.18 0.23 -0.49 16 23 C -0.12 -0.47 8.09 31.18 0.25 -0.22 16 24 C -0.15 -1.36 7.88 31.12 0.25 -1.11 16 25 C 0.03 0.59 10.75 83.49 0.90 1.48 16 26 C 0.15 4.66 6.61 86.50 0.57 5.23 16 27 C 0.06 2.17 5.47 86.54 0.47 2.64 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H -0.04 -2.41 8.12 -2.39 -0.02 -2.43 16 30 H 0.01 0.69 7.97 -2.39 -0.02 0.67 16 31 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.09 2.67 7.99 -2.39 -0.02 2.65 16 33 H 0.11 1.56 5.64 -2.39 -0.01 1.54 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.42 6.10 6.32 -92.71 -0.59 5.51 16 36 H 0.18 6.21 5.93 -2.91 -0.02 6.19 16 37 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.10 0.35 6.33 -2.39 -0.02 0.34 16 39 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 40 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 41 H 0.09 0.20 8.14 -2.38 -0.02 0.18 16 42 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.22 1.52 6.72 -2.91 -0.02 1.50 16 45 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 46 H 0.09 2.86 7.09 -2.39 -0.02 2.84 16 47 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.08 3.33 6.67 -2.38 -0.02 3.32 16 Total: -1.00 -75.78 380.29 0.03 -75.76 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 0.39 Total: 14.49 kcal Atomic # 6 Polarization: 14.11 SS G_CDS: 7.70 Total: 21.81 kcal Atomic # 7 Polarization: -125.14 SS G_CDS: -10.04 Total: -135.19 kcal Atomic # 8 Polarization: -22.63 SS G_CDS: -0.05 Total: -22.68 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.78 0.03 -75.76 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934299724.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.153 kcal (2) G-P(sol) polarization free energy of solvation -75.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds