Wall clock time and date at job start Tue Mar 31 2020 18:07:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48496 * 109.47096 * 270.00290 * 3 2 1 5 5 H 1.48497 * 109.47091 * 30.00637 * 3 2 1 6 6 H 1.48504 * 109.46601 * 150.00274 * 3 2 1 7 7 C 1.38814 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99888 * 163.06920 * 7 2 1 9 9 N 1.36942 * 120.00178 * 343.07091 * 7 2 1 10 10 C 1.46917 * 120.62700 * 331.84837 * 9 7 2 11 11 C 1.53196 * 108.77312 * 233.58682 * 10 9 7 12 12 C 1.53041 * 109.31328 * 305.36308 * 11 10 9 13 13 N 1.46497 * 109.46271 * 181.38485 * 12 11 10 14 14 C 1.34769 * 120.00051 * 154.97602 * 13 12 11 15 15 O 1.21598 * 120.00263 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00062 * 180.27738 * 14 13 12 17 17 C 1.40845 * 120.00203 * 179.72513 * 16 14 13 18 18 C 1.40230 * 126.07655 * 359.69017 * 17 16 14 19 19 N 1.30835 * 108.34446 * 179.88080 * 18 17 16 20 20 N 1.40070 * 108.36313 * 0.37811 * 19 18 17 21 21 C 1.46503 * 126.06060 * 179.78338 * 20 19 18 22 22 C 1.53778 * 113.61154 * 194.11142 * 21 20 19 23 23 C 1.53954 * 87.02058 * 220.04514 * 22 21 20 24 24 C 1.53777 * 113.61744 * 96.50526 * 21 20 19 25 25 C 1.35732 * 126.07397 * 179.97438 * 17 16 14 26 26 C 1.53043 * 109.52322 * 61.37525 * 12 11 10 27 27 C 1.46923 * 120.63006 * 151.82365 * 9 7 2 28 28 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58893 * 113.80277 * 10 9 7 30 30 H 1.08996 * 109.71011 * 353.44061 * 10 9 7 31 31 H 1.09000 * 109.49605 * 185.41667 * 11 10 9 32 32 H 1.08996 * 109.49902 * 65.31992 * 11 10 9 33 33 H 1.08998 * 109.46049 * 301.36360 * 12 11 10 34 34 H 0.97007 * 119.99565 * 334.98051 * 13 12 11 35 35 H 0.97007 * 120.00094 * 359.72040 * 16 14 13 36 36 H 1.08006 * 125.82593 * 0.02562 * 18 17 16 37 37 H 1.09002 * 112.84779 * 325.30182 * 21 20 19 38 38 H 1.08994 * 113.61877 * 334.56736 * 22 21 20 39 39 H 1.09008 * 113.61460 * 105.46797 * 22 21 20 40 40 H 1.09003 * 113.53245 * 270.81533 * 23 22 21 41 41 H 1.08993 * 113.74383 * 139.94486 * 23 22 21 42 42 H 1.09005 * 113.60904 * 254.53280 * 24 21 20 43 43 H 1.09004 * 113.61561 * 25.43043 * 24 21 20 44 44 H 1.08002 * 126.21818 * 359.92627 * 25 17 16 45 45 H 1.08996 * 109.49889 * 58.57300 * 26 12 11 46 46 H 1.08995 * 109.49963 * 178.67451 * 26 12 11 47 47 H 1.08988 * 109.58870 * 246.20170 * 27 9 7 48 48 H 1.09003 * 109.58811 * 6.48776 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2225 -0.2729 9 7 1.3699 -2.3626 0.3443 10 6 0.2260 -2.3408 1.2659 11 6 0.4973 -3.3209 2.4117 12 6 0.8116 -4.7021 1.8326 13 7 1.0392 -5.6498 2.9264 14 6 0.8352 -6.9674 2.7298 15 8 0.4627 -7.3697 1.6445 16 7 1.0392 -7.8386 3.7377 17 6 0.8204 -9.2150 3.5340 18 6 0.3866 -9.8148 2.3430 19 7 0.3029 -11.1057 2.5388 20 7 0.6714 -11.3760 3.8628 21 6 0.7107 -12.6973 4.4944 22 6 0.8184 -12.6443 6.0275 23 6 1.7980 -13.8269 5.9194 24 6 2.1084 -13.3387 4.4946 25 6 0.9868 -10.1959 4.4573 26 6 2.0672 -4.6179 0.9616 27 6 1.8135 -3.6528 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6773 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6677 31 1 -0.3833 -3.3862 3.0508 32 1 1.3470 -2.9698 2.9972 33 1 -0.0285 -5.0417 1.2268 34 1 1.3367 -5.3288 3.7921 35 1 1.3367 -7.5177 4.6035 36 1 0.1623 -9.2993 1.4208 37 1 -0.0747 -13.3620 4.1346 38 1 1.2779 -11.7294 6.4016 39 1 -0.1117 -12.8919 6.5394 40 1 1.3096 -14.8009 5.9505 41 1 2.6469 -13.7572 6.5995 42 1 2.2184 -14.1460 3.7705 43 1 2.9214 -12.6140 4.4488 44 1 1.3114 -10.0625 5.4787 45 1 2.9020 -4.2544 1.5608 46 1 2.3042 -5.6064 0.5683 47 1 1.0399 -4.0598 -0.8518 48 1 2.7329 -3.5126 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934323383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:28 Heat of formation + Delta-G solvation = 99.313456 kcal Electronic energy + Delta-G solvation = -28125.031891 eV Core-core repulsion = 24218.322036 eV Total energy + Delta-G solvation = -3906.709855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.56986 -39.97637 -38.79036 -37.44669 -34.66608 -34.37422 -32.12994 -31.43129 -30.19064 -29.62752 -28.73663 -26.30054 -25.51606 -24.85621 -22.61324 -22.17408 -21.89503 -21.25003 -20.39242 -19.70888 -19.32585 -18.02156 -17.84377 -16.75492 -16.25534 -16.04916 -15.45455 -15.04421 -14.86883 -14.63077 -14.59071 -14.07838 -13.67613 -13.52448 -13.45672 -13.29015 -12.99408 -12.85333 -12.68424 -12.58468 -12.32158 -11.86079 -11.44387 -11.29717 -11.16810 -11.10442 -10.85989 -10.78065 -10.70496 -10.69508 -10.47045 -10.24792 -10.02379 -9.96152 -9.73525 -9.52389 -9.44714 -8.74811 -8.44829 -7.70867 -6.66418 -5.78364 -3.20190 1.67188 2.18167 2.68469 2.81854 3.38068 3.45073 3.47212 3.50338 3.76834 3.94114 4.20756 4.22957 4.31506 4.50706 4.54668 4.80687 5.00870 5.07994 5.13385 5.28892 5.31044 5.34692 5.37425 5.40251 5.49805 5.55474 5.58257 5.62732 5.76899 5.91298 6.10142 6.15601 6.30970 6.36298 6.50748 6.59134 6.62540 6.80676 6.82689 6.91158 6.91965 6.99807 7.09265 7.33517 7.62590 7.64909 7.80706 8.08102 8.46090 8.68881 9.22255 9.85597 10.42709 11.30615 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.001843 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.367923 B =15191.764629 C =15279.822657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.734 5.734 14 C 0.705 3.295 15 O -0.578 6.578 16 N -0.665 5.665 17 C 0.032 3.968 18 C 0.053 3.947 19 N -0.288 5.288 20 N -0.365 5.365 21 C 0.144 3.856 22 C -0.146 4.146 23 C -0.138 4.138 24 C -0.149 4.149 25 C 0.003 3.997 26 C -0.140 4.140 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.054 0.946 32 H 0.059 0.941 33 H 0.083 0.917 34 H 0.392 0.608 35 H 0.403 0.597 36 H 0.208 0.792 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.089 0.911 44 H 0.171 0.829 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.021 0.979 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.707 -24.492 16.441 29.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.387 5.387 14 C 0.405 3.595 15 O -0.455 6.455 16 N -0.313 5.313 17 C -0.073 4.073 18 C -0.134 4.134 19 N -0.109 5.109 20 N -0.151 5.151 21 C 0.042 3.958 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.188 4.188 25 C -0.144 4.144 26 C -0.180 4.180 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.040 0.960 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.225 0.775 35 H 0.237 0.763 36 H 0.224 0.776 37 H 0.138 0.862 38 H 0.111 0.889 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.107 0.893 44 H 0.188 0.812 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.963 -25.855 14.921 29.917 hybrid contribution 0.951 2.025 1.342 2.609 sum 2.914 -23.830 16.263 28.998 Atomic orbital electron populations 1.70027 1.05238 1.25499 1.53997 1.25052 0.95286 0.98408 1.00955 0.86310 0.79121 0.83684 0.77735 1.21397 1.21595 1.20541 1.19177 0.92567 0.84760 1.41598 0.91693 1.44090 1.35806 1.01685 1.49955 1.20738 0.88949 0.97847 0.87673 1.22553 1.00508 0.94696 1.00880 1.20958 0.98484 0.87390 0.86627 1.45521 1.72353 1.04539 1.16322 1.15877 0.78693 0.81236 0.83654 1.90799 1.53082 1.77335 1.24326 1.41939 1.71467 1.03432 1.14437 1.17487 1.11242 0.83352 0.95262 1.24594 0.99313 0.89682 0.99831 1.77386 1.21888 1.16593 0.94999 1.48349 1.52976 1.05280 1.08470 1.22886 0.99411 0.80986 0.92507 1.23437 1.01095 1.00074 0.93802 1.22736 0.99720 0.98084 0.97040 1.23463 0.96741 1.00917 0.97666 1.21595 1.08392 0.85276 0.99101 1.22399 0.97180 0.99594 0.98843 1.20880 0.97924 0.86488 0.92675 0.93621 0.96046 0.89043 0.92731 0.92211 0.89852 0.77490 0.76285 0.77560 0.86156 0.88950 0.89924 0.89365 0.90226 0.90253 0.89285 0.81165 0.92454 0.92591 0.96101 0.92592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.19 55.49 0.62 -25.36 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.85 9.58 -15.06 -0.14 -6.99 16 8 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 9 N -0.59 -14.73 2.99 -172.32 -0.52 -15.25 16 10 C 0.17 4.06 5.30 -3.71 -0.02 4.04 16 11 C -0.15 -2.62 5.55 -26.61 -0.15 -2.77 16 12 C 0.17 2.90 2.42 -67.89 -0.16 2.73 16 13 N -0.73 -10.00 5.08 -58.63 -0.30 -10.30 16 14 C 0.71 10.38 8.50 -86.92 -0.74 9.64 16 15 O -0.58 -10.65 13.16 5.28 0.07 -10.58 16 16 N -0.66 -7.45 5.48 -14.39 -0.08 -7.53 16 17 C 0.03 0.40 6.90 -83.86 -0.58 -0.18 16 18 C 0.05 0.78 10.84 -17.23 -0.19 0.59 16 19 N -0.29 -4.02 12.57 30.70 0.39 -3.63 16 20 N -0.37 -3.84 3.83 -53.73 -0.21 -4.04 16 21 C 0.14 1.00 5.03 -67.12 -0.34 0.66 16 22 C -0.15 -0.62 7.46 -25.83 -0.19 -0.81 16 23 C -0.14 -0.49 8.09 -25.83 -0.21 -0.70 16 24 C -0.15 -0.85 7.88 -25.92 -0.20 -1.05 16 25 C 0.00 0.03 10.75 -16.67 -0.18 -0.15 16 26 C -0.14 -2.55 5.65 -26.61 -0.15 -2.70 16 27 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 28 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.36 6.07 -51.93 -0.31 2.05 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 34 H 0.39 4.11 8.62 -40.82 -0.35 3.76 16 35 H 0.40 3.00 8.84 -40.82 -0.36 2.64 16 36 H 0.21 3.35 5.91 -52.48 -0.31 3.04 16 37 H 0.12 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.36 6.33 -51.93 -0.33 0.03 16 39 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.17 0.98 6.72 -52.49 -0.35 0.62 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.02 0.47 8.14 -51.94 -0.42 0.04 16 48 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -33.43 382.48 -10.10 -43.53 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.45 Total: 5.54 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -3.36 Total: 5.42 kcal Atomic # 7 Polarization: -66.03 SS G_CDS: -0.09 Total: -66.12 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: 0.07 Total: -10.58 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.43 -10.10 -43.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934323383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.839 kcal (2) G-P(sol) polarization free energy of solvation -33.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds