Wall clock time and date at job start Tue Mar 31 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48496 * 109.47096 * 270.00290 * 3 2 1 5 5 H 1.48497 * 109.47091 * 30.00637 * 3 2 1 6 6 H 1.48504 * 109.46601 * 150.00274 * 3 2 1 7 7 C 1.38814 * 119.99416 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99888 * 163.06920 * 7 2 1 9 9 N 1.36942 * 120.00178 * 343.07091 * 7 2 1 10 10 C 1.46917 * 120.62700 * 331.84837 * 9 7 2 11 11 C 1.53196 * 108.77312 * 233.58682 * 10 9 7 12 12 C 1.53041 * 109.31328 * 305.36308 * 11 10 9 13 13 N 1.46497 * 109.46271 * 181.38485 * 12 11 10 14 14 C 1.34769 * 120.00051 * 154.97602 * 13 12 11 15 15 O 1.21598 * 120.00263 * 0.02562 * 14 13 12 16 16 N 1.34780 * 120.00062 * 180.27738 * 14 13 12 17 17 C 1.40845 * 120.00203 * 179.72513 * 16 14 13 18 18 C 1.40230 * 126.07655 * 359.69017 * 17 16 14 19 19 N 1.30835 * 108.34446 * 179.88080 * 18 17 16 20 20 N 1.40070 * 108.36313 * 0.37811 * 19 18 17 21 21 C 1.46503 * 126.06060 * 179.78338 * 20 19 18 22 22 C 1.53778 * 113.61154 * 194.11142 * 21 20 19 23 23 C 1.53954 * 87.02058 * 220.04514 * 22 21 20 24 24 C 1.53777 * 113.61744 * 96.50526 * 21 20 19 25 25 C 1.35732 * 126.07397 * 179.97438 * 17 16 14 26 26 C 1.53043 * 109.52322 * 61.37525 * 12 11 10 27 27 C 1.46923 * 120.63006 * 151.82365 * 9 7 2 28 28 H 0.97003 * 119.99746 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58893 * 113.80277 * 10 9 7 30 30 H 1.08996 * 109.71011 * 353.44061 * 10 9 7 31 31 H 1.09000 * 109.49605 * 185.41667 * 11 10 9 32 32 H 1.08996 * 109.49902 * 65.31992 * 11 10 9 33 33 H 1.08998 * 109.46049 * 301.36360 * 12 11 10 34 34 H 0.97007 * 119.99565 * 334.98051 * 13 12 11 35 35 H 0.97007 * 120.00094 * 359.72040 * 16 14 13 36 36 H 1.08006 * 125.82593 * 0.02562 * 18 17 16 37 37 H 1.09002 * 112.84779 * 325.30182 * 21 20 19 38 38 H 1.08994 * 113.61877 * 334.56736 * 22 21 20 39 39 H 1.09008 * 113.61460 * 105.46797 * 22 21 20 40 40 H 1.09003 * 113.53245 * 270.81533 * 23 22 21 41 41 H 1.08993 * 113.74383 * 139.94486 * 23 22 21 42 42 H 1.09005 * 113.60904 * 254.53280 * 24 21 20 43 43 H 1.09004 * 113.61561 * 25.43043 * 24 21 20 44 44 H 1.08002 * 126.21818 * 359.92627 * 25 17 16 45 45 H 1.08996 * 109.49889 * 58.57300 * 26 12 11 46 46 H 1.08995 * 109.49963 * 178.67451 * 26 12 11 47 47 H 1.08988 * 109.58870 * 246.20170 * 27 9 7 48 48 H 1.09003 * 109.58811 * 6.48776 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4478 2.6526 0.7002 6 1 3.5478 1.4399 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0550 -1.2225 -0.2729 9 7 1.3699 -2.3626 0.3443 10 6 0.2260 -2.3408 1.2659 11 6 0.4973 -3.3209 2.4117 12 6 0.8116 -4.7021 1.8326 13 7 1.0392 -5.6498 2.9264 14 6 0.8352 -6.9674 2.7298 15 8 0.4627 -7.3697 1.6445 16 7 1.0392 -7.8386 3.7377 17 6 0.8204 -9.2150 3.5340 18 6 0.3866 -9.8148 2.3430 19 7 0.3029 -11.1057 2.5388 20 7 0.6714 -11.3760 3.8628 21 6 0.7107 -12.6973 4.4944 22 6 0.8184 -12.6443 6.0275 23 6 1.7980 -13.8269 5.9194 24 6 2.1084 -13.3387 4.4946 25 6 0.9868 -10.1959 4.4573 26 6 2.0672 -4.6179 0.9616 27 6 1.8135 -3.6528 -0.2009 28 1 -0.4850 0.8401 0.0004 29 1 -0.6773 -2.6410 0.7346 30 1 0.0967 -1.3359 1.6677 31 1 -0.3833 -3.3862 3.0508 32 1 1.3470 -2.9698 2.9972 33 1 -0.0285 -5.0417 1.2268 34 1 1.3367 -5.3288 3.7921 35 1 1.3367 -7.5177 4.6035 36 1 0.1623 -9.2993 1.4208 37 1 -0.0747 -13.3620 4.1346 38 1 1.2779 -11.7294 6.4016 39 1 -0.1117 -12.8919 6.5394 40 1 1.3096 -14.8009 5.9505 41 1 2.6469 -13.7572 6.5995 42 1 2.2184 -14.1460 3.7705 43 1 2.9214 -12.6140 4.4488 44 1 1.3114 -10.0625 5.4787 45 1 2.9020 -4.2544 1.5608 46 1 2.3042 -5.6064 0.5683 47 1 1.0399 -4.0598 -0.8518 48 1 2.7329 -3.5126 -0.7694 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934323383.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:27 Heat of formation + Delta-G solvation = 76.820227 kcal Electronic energy + Delta-G solvation = -28126.007271 eV Core-core repulsion = 24218.322036 eV Total energy + Delta-G solvation = -3907.685235 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.44232 -41.08252 -39.44820 -38.93540 -36.06599 -35.61632 -33.87373 -32.31225 -31.78482 -31.23363 -29.83544 -26.93964 -26.65750 -25.94658 -24.11731 -23.79301 -22.78902 -22.37909 -21.50456 -20.92085 -20.24580 -19.15311 -18.78887 -18.47338 -17.24691 -16.81210 -16.66994 -16.45076 -15.98153 -15.85243 -15.57048 -15.44333 -15.31676 -14.99571 -14.72601 -14.36263 -14.06924 -13.96993 -13.89776 -13.37107 -13.20777 -13.17349 -12.98873 -12.59465 -12.49176 -12.34668 -12.19318 -12.01482 -11.90380 -11.82257 -11.81534 -11.53025 -11.44788 -11.39127 -11.31335 -11.11601 -10.53906 -10.30880 -10.02906 -8.68646 -8.61462 -7.86089 -5.31509 0.83269 1.36390 1.49699 1.50601 1.60762 1.62644 1.82256 2.41275 2.53651 3.22356 3.30825 3.39192 3.54560 3.69194 3.80706 3.85606 3.88400 3.93796 4.07018 4.09547 4.37833 4.48778 4.51316 4.56688 4.64148 4.68188 4.73882 4.79698 4.84150 4.88379 4.99166 5.00706 5.04982 5.08710 5.10054 5.19123 5.21473 5.32936 5.39493 5.49803 5.62089 5.66822 5.73124 5.84676 6.03253 6.16131 6.40960 6.70329 7.13123 7.16484 7.60305 7.86100 8.39095 9.21045 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.042009 B = 0.001843 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.367923 B =15191.764629 C =15279.822657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.269 1.269 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.608 5.608 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.183 3.817 13 N -0.719 5.719 14 C 0.701 3.299 15 O -0.620 6.620 16 N -0.643 5.643 17 C 0.003 3.997 18 C 0.027 3.973 19 N -0.322 5.322 20 N -0.357 5.357 21 C 0.121 3.879 22 C -0.135 4.135 23 C -0.124 4.124 24 C -0.151 4.151 25 C 0.035 3.965 26 C -0.124 4.124 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.412 0.588 35 H 0.424 0.576 36 H 0.180 0.820 37 H 0.120 0.880 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.081 0.919 44 H 0.219 0.781 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.006 0.994 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -25.783 20.152 33.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.193 1.193 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.374 5.374 14 C 0.401 3.599 15 O -0.500 6.500 16 N -0.293 5.293 17 C -0.102 4.102 18 C -0.159 4.159 19 N -0.145 5.145 20 N -0.142 5.142 21 C 0.021 3.979 22 C -0.173 4.173 23 C -0.162 4.162 24 C -0.190 4.190 25 C -0.114 4.114 26 C -0.164 4.164 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.249 0.751 35 H 0.263 0.737 36 H 0.197 0.803 37 H 0.137 0.863 38 H 0.122 0.878 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.110 0.890 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.235 0.765 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.024 0.976 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.622 -27.197 18.697 33.202 hybrid contribution 0.430 2.242 0.169 2.289 sum 4.052 -24.955 18.866 31.546 Atomic orbital electron populations 1.70189 1.06685 1.25924 1.55351 1.25819 0.96043 1.01523 1.01163 0.85262 0.78141 0.79465 0.77457 1.21472 1.21753 1.19335 1.19511 0.92864 0.85839 1.41101 0.91532 1.44345 1.35950 1.02148 1.50744 1.20573 0.87679 0.97791 0.88796 1.22256 1.02080 0.93443 0.98893 1.20503 0.96970 0.87613 0.87185 1.45033 1.72354 1.03748 1.16267 1.16001 0.78516 0.81598 0.83751 1.90804 1.54779 1.78029 1.26393 1.41560 1.70600 1.02627 1.14490 1.17622 1.13280 0.84086 0.95256 1.24311 1.01009 0.90413 1.00208 1.77311 1.23399 1.16363 0.97379 1.48797 1.51128 1.06900 1.07381 1.23440 1.00349 0.79639 0.94501 1.23471 1.01934 1.00876 0.91015 1.22715 0.99911 0.98327 0.95273 1.23466 0.95487 1.00597 0.99404 1.22248 1.05152 0.83826 1.00148 1.22184 0.97966 0.98484 0.97749 1.20966 0.97292 0.86013 0.93940 0.94037 0.98829 0.91782 0.90394 0.90894 0.92485 0.75113 0.73739 0.80295 0.86261 0.87800 0.88782 0.88306 0.88967 0.90663 0.90047 0.76485 0.91440 0.92398 0.97603 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.23 11.19 21.65 0.24 -54.99 16 2 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 3 Si 0.97 44.48 29.59 68.60 2.03 46.51 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 7 C -0.26 -14.47 9.58 84.03 0.81 -13.66 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.54 16 9 N -0.61 -30.80 2.99 -699.11 -2.09 -32.89 16 10 C 0.18 8.47 5.30 86.37 0.46 8.93 16 11 C -0.13 -4.42 5.55 30.67 0.17 -4.25 16 12 C 0.18 6.15 2.42 45.02 0.11 6.26 16 13 N -0.72 -18.24 5.08 -457.68 -2.33 -20.56 16 14 C 0.70 20.02 8.50 179.06 1.52 21.54 16 15 O -0.62 -23.49 13.16 -4.02 -0.05 -23.54 16 16 N -0.64 -13.11 5.48 -317.71 -1.74 -14.85 16 17 C 0.00 0.06 6.90 37.59 0.26 0.32 16 18 C 0.03 0.81 10.84 85.33 0.92 1.73 16 19 N -0.32 -9.17 12.57 -56.78 -0.71 -9.88 16 20 N -0.36 -6.93 3.83 -323.92 -1.24 -8.18 16 21 C 0.12 1.43 5.03 45.52 0.23 1.66 16 22 C -0.13 -0.62 7.46 31.18 0.23 -0.39 16 23 C -0.12 -0.44 8.09 31.18 0.25 -0.19 16 24 C -0.15 -1.39 7.88 31.12 0.25 -1.15 16 25 C 0.03 0.56 10.75 83.49 0.90 1.46 16 26 C -0.12 -4.44 5.65 30.68 0.17 -4.27 16 27 C 0.14 6.33 6.52 86.37 0.56 6.89 16 28 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 29 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 30 H 0.06 3.40 6.07 -2.39 -0.01 3.39 16 31 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 2.27 7.58 -2.39 -0.02 2.25 16 34 H 0.41 7.26 8.62 -92.70 -0.80 6.46 16 35 H 0.42 4.77 8.84 -92.70 -0.82 3.95 16 36 H 0.18 6.38 5.91 -2.91 -0.02 6.36 16 37 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 0.26 6.33 -2.39 -0.02 0.25 16 39 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 40 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 43 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.22 1.28 6.72 -2.91 -0.02 1.26 16 45 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 47 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 48 H 0.06 2.43 7.93 -2.39 -0.02 2.41 16 Total: -1.00 -76.78 382.48 0.73 -76.05 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -0.63 Total: 19.82 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: 7.26 Total: 22.51 kcal Atomic # 7 Polarization: -133.48 SS G_CDS: -7.87 Total: -141.35 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.78 0.73 -76.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934323383.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.867 kcal (2) G-P(sol) polarization free energy of solvation -76.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds