Wall clock time and date at job start Tue Mar 31 2020 18:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47226 * 239.99513 * 3 2 1 5 5 H 1.48497 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46856 * 119.99641 * 3 2 1 7 7 C 1.38809 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00346 * 163.07766 * 7 2 1 9 9 N 1.36942 * 120.00413 * 343.07512 * 7 2 1 10 10 C 1.46921 * 120.62926 * 331.83997 * 9 7 2 11 11 C 1.53196 * 108.77705 * 233.62739 * 10 9 7 12 12 C 1.53037 * 109.30687 * 305.36465 * 11 10 9 13 13 N 1.46510 * 109.45648 * 181.38498 * 12 11 10 14 14 C 1.34774 * 119.99911 * 154.97226 * 13 12 11 15 15 O 1.21588 * 120.00138 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99674 * 180.27478 * 14 13 12 17 17 C 1.39510 * 119.99975 * 179.72404 * 16 14 13 18 18 C 1.36104 * 126.20967 * 0.02910 * 17 16 14 19 19 C 1.39769 * 107.82020 * 180.02562 * 18 17 16 20 20 N 1.30844 * 108.32526 * 359.97438 * 19 18 17 21 21 N 1.35243 * 126.21626 * 179.71489 * 17 16 14 22 22 C 1.46505 * 126.04442 * 359.97438 * 21 17 16 23 23 C 1.53774 * 113.61609 * 219.13659 * 22 21 17 24 24 C 1.53953 * 87.02156 * 220.05265 * 23 22 21 25 25 C 1.53776 * 87.10889 * 25.36260 * 24 23 22 26 26 C 1.53038 * 109.52949 * 61.37224 * 12 11 10 27 27 C 1.46920 * 120.63188 * 151.85548 * 9 7 2 28 28 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59076 * 113.83397 * 10 9 7 30 30 H 1.09005 * 109.70344 * 353.48094 * 10 9 7 31 31 H 1.08997 * 109.49737 * 185.41290 * 11 10 9 32 32 H 1.09001 * 109.49335 * 65.31351 * 11 10 9 33 33 H 1.08995 * 109.46356 * 301.35483 * 12 11 10 34 34 H 0.97001 * 119.99499 * 334.96706 * 13 12 11 35 35 H 0.96999 * 120.00249 * 359.71995 * 16 14 13 36 36 H 1.07998 * 126.09234 * 359.95632 * 18 17 16 37 37 H 1.08004 * 125.83595 * 180.02562 * 19 18 17 38 38 H 1.08996 * 112.85077 * 350.33658 * 22 21 17 39 39 H 1.09010 * 113.61752 * 334.57315 * 23 22 21 40 40 H 1.09000 * 113.61346 * 105.47272 * 23 22 21 41 41 H 1.09000 * 113.53635 * 270.81090 * 24 23 22 42 42 H 1.08997 * 113.74565 * 139.94808 * 24 23 22 43 43 H 1.09005 * 113.61192 * 220.08667 * 25 24 23 44 44 H 1.09001 * 113.61730 * 89.19472 * 25 24 23 45 45 H 1.09000 * 109.49810 * 58.57841 * 26 12 11 46 46 H 1.09008 * 109.49748 * 178.67442 * 26 12 11 47 47 H 1.09004 * 109.59191 * 246.16240 * 27 9 7 48 48 H 1.09003 * 109.58961 * 6.44315 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3463 10 6 0.2262 -2.3400 1.2680 11 6 0.4980 -3.3183 2.4151 12 6 0.8131 -4.7001 1.8377 13 7 1.0412 -5.6462 2.9328 14 6 0.8379 -6.9642 2.7380 15 8 0.4655 -7.3681 1.6533 16 7 1.0424 -7.8339 3.7470 17 6 0.8264 -9.1976 3.5471 18 6 0.4118 -9.7851 2.3915 19 6 0.3223 -11.1611 2.6194 20 7 0.6683 -11.3962 3.8591 21 7 0.9965 -10.1766 4.4646 22 6 1.4421 -9.9933 5.8482 23 6 2.4028 -11.0903 6.3364 24 6 1.6516 -11.0383 7.6793 25 6 0.4396 -10.5131 6.8920 26 6 2.0685 -4.6164 0.9664 27 6 1.8143 -3.6530 -0.1972 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6769 -2.6411 0.7372 30 1 0.0964 -1.3345 1.6685 31 1 -0.3824 -3.3832 3.0543 32 1 1.3477 -2.9660 3.0000 33 1 -0.0268 -5.0409 1.2325 34 1 1.3387 -5.3240 3.7980 35 1 1.3399 -7.5118 4.6123 36 1 0.1902 -9.2781 1.4640 37 1 0.0200 -11.9036 1.8956 38 1 1.7960 -8.9821 6.0485 39 1 2.2888 -12.0372 5.8087 40 1 3.4407 -10.7638 6.4027 41 1 2.0640 -10.3133 8.3810 42 1 1.4890 -12.0176 8.1294 43 1 -0.1053 -9.7214 7.4063 44 1 -0.2124 -11.3018 6.5165 45 1 2.9032 -4.2518 1.5652 46 1 2.3060 -5.6054 0.5744 47 1 1.0408 -4.0614 -0.8476 48 1 2.7335 -3.5131 -0.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934707374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:15 Heat of formation + Delta-G solvation = 102.359072 kcal Electronic energy + Delta-G solvation = -28591.212989 eV Core-core repulsion = 24684.635201 eV Total energy + Delta-G solvation = -3906.577787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.70163 -40.05293 -38.70547 -37.58644 -34.97148 -34.54599 -32.20290 -31.65433 -30.25008 -29.59577 -28.53805 -26.16780 -25.60138 -25.07899 -22.90871 -22.27106 -21.92130 -21.21436 -20.35033 -19.66914 -19.35044 -18.67364 -17.78788 -16.69521 -15.98694 -15.94097 -15.77368 -15.21142 -14.86401 -14.74302 -14.43185 -13.94899 -13.76811 -13.58512 -13.46052 -13.13153 -13.05075 -12.96507 -12.81329 -12.58265 -12.40849 -11.62739 -11.51290 -11.20583 -11.16140 -11.11649 -11.06815 -10.89224 -10.74135 -10.67818 -10.53116 -10.31564 -10.08049 -10.00558 -9.80269 -9.60029 -9.05571 -8.87047 -8.49309 -8.06201 -6.71636 -5.82354 -3.24655 1.72779 1.85211 2.69341 2.81166 3.26862 3.36340 3.42273 3.43146 3.91933 3.96772 4.04150 4.18264 4.31713 4.47090 4.72642 4.87120 5.15666 5.22510 5.29549 5.30480 5.37136 5.41721 5.45200 5.45641 5.47155 5.54141 5.56396 5.80960 5.84132 5.94469 6.02501 6.10046 6.22888 6.26432 6.41818 6.51484 6.53448 6.66494 6.76260 6.77985 6.87810 6.97100 7.03955 7.27368 7.57016 7.63800 7.76513 7.87108 8.41690 8.44994 9.17887 9.80958 10.37821 11.26648 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025912 B = 0.002145 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.328344 B =13047.708491 C =13580.693004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.253 4.253 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.168 3.832 13 N -0.730 5.730 14 C 0.709 3.291 15 O -0.556 6.556 16 N -0.666 5.666 17 C 0.328 3.672 18 C -0.282 4.282 19 C 0.059 3.941 20 N -0.297 5.297 21 N -0.380 5.380 22 C 0.130 3.870 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.143 4.143 26 C -0.140 4.140 27 C 0.147 3.853 28 H 0.255 0.745 29 H 0.022 0.978 30 H 0.092 0.908 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.085 0.915 34 H 0.393 0.607 35 H 0.402 0.598 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.057 0.943 46 H 0.056 0.944 47 H 0.022 0.978 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.410 -19.909 15.561 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.383 5.383 14 C 0.409 3.591 15 O -0.430 6.430 16 N -0.317 5.317 17 C 0.107 3.893 18 C -0.314 4.314 19 C -0.126 4.126 20 N -0.118 5.118 21 N -0.168 5.168 22 C 0.028 3.972 23 C -0.175 4.175 24 C -0.178 4.178 25 C -0.181 4.181 26 C -0.181 4.181 27 C 0.020 3.980 28 H 0.065 0.935 29 H 0.040 0.960 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.226 0.774 35 H 0.236 0.764 36 H 0.192 0.808 37 H 0.201 0.799 38 H 0.131 0.869 39 H 0.119 0.881 40 H 0.093 0.907 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.076 0.924 46 H 0.075 0.925 47 H 0.040 0.960 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 2.155 -20.868 15.499 26.083 hybrid contribution 0.661 1.904 0.382 2.051 sum 2.816 -18.964 15.881 24.895 Atomic orbital electron populations 1.70009 1.05240 1.25690 1.53808 1.25058 0.95304 0.98448 1.00835 0.86360 0.78898 0.83311 0.78133 1.20852 1.21638 1.21077 1.19146 0.92573 0.84753 1.41812 0.91673 1.44092 1.35787 1.01686 1.49962 1.20746 0.88984 0.97876 0.87613 1.22567 1.00572 0.94518 1.00989 1.21040 0.98681 0.87353 0.86406 1.45568 1.71999 1.04133 1.16585 1.15691 0.78907 0.81220 0.83317 1.90884 1.51577 1.76836 1.23726 1.41995 1.71150 1.03144 1.15374 1.17727 1.00047 0.80373 0.91131 1.21697 1.16570 0.93298 0.99847 1.23771 0.98598 0.96469 0.93806 1.77332 1.24176 1.00969 1.09364 1.48615 1.55321 1.03339 1.09501 1.22895 0.97542 1.00239 0.76551 1.23320 0.98210 0.99655 0.96344 1.22751 0.96469 1.02381 0.96160 1.23377 0.97130 1.01676 0.95916 1.22411 0.97063 0.99714 0.98884 1.20878 0.98018 0.86458 0.92603 0.93513 0.95978 0.88956 0.92661 0.92140 0.89657 0.77386 0.76360 0.80832 0.79876 0.86854 0.88107 0.90740 0.89677 0.90313 0.90727 0.88596 0.92373 0.92535 0.96038 0.92492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.65 11.19 55.49 0.62 -25.03 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.23 29.59 -169.99 -5.03 16.20 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.25 -6.79 9.58 -15.06 -0.14 -6.93 16 8 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.44 2.99 -172.32 -0.52 -14.95 16 10 C 0.17 3.96 5.30 -3.71 -0.02 3.94 16 11 C -0.15 -2.53 5.55 -26.61 -0.15 -2.68 16 12 C 0.17 2.77 2.42 -67.89 -0.16 2.60 16 13 N -0.73 -9.40 5.08 -58.63 -0.30 -9.69 16 14 C 0.71 10.02 8.49 -86.92 -0.74 9.28 16 15 O -0.56 -9.92 13.13 5.29 0.07 -9.85 16 16 N -0.67 -7.36 5.42 -15.85 -0.09 -7.45 16 17 C 0.33 4.17 7.66 -153.14 -1.17 3.00 16 18 C -0.28 -3.94 9.65 -39.78 -0.38 -4.32 16 19 C 0.06 0.71 12.01 -17.40 -0.21 0.50 16 20 N -0.30 -3.65 12.02 30.61 0.37 -3.29 16 21 N -0.38 -4.24 3.69 -53.11 -0.20 -4.43 16 22 C 0.13 1.00 4.62 -67.12 -0.31 0.69 16 23 C -0.14 -0.93 7.78 -25.83 -0.20 -1.13 16 24 C -0.14 -0.72 8.09 -25.83 -0.21 -0.93 16 25 C -0.14 -0.96 7.88 -25.92 -0.20 -1.16 16 26 C -0.14 -2.46 5.65 -26.61 -0.15 -2.62 16 27 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 28 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 2.34 6.06 -51.93 -0.31 2.03 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.09 1.59 7.58 -51.93 -0.39 1.20 16 34 H 0.39 3.82 8.62 -40.82 -0.35 3.46 16 35 H 0.40 2.95 7.73 -40.82 -0.32 2.64 16 36 H 0.17 2.74 5.82 -52.49 -0.31 2.44 16 37 H 0.18 1.57 8.06 -52.48 -0.42 1.15 16 38 H 0.11 0.62 7.12 -51.93 -0.37 0.25 16 39 H 0.10 0.85 7.74 -51.92 -0.40 0.45 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 47 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -32.40 382.98 -10.95 -43.35 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -7.49 Total: 6.09 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -4.16 Total: 3.28 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -0.11 Total: -64.84 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.07 Total: -9.85 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.40 -10.95 -43.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934707374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.710 kcal (2) G-P(sol) polarization free energy of solvation -32.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds