Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86799 * 119.99971 * 2 1 4 4 H 1.48501 * 109.47226 * 239.99513 * 3 2 1 5 5 H 1.48497 * 109.47102 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46856 * 119.99641 * 3 2 1 7 7 C 1.38809 * 119.99987 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00346 * 163.07766 * 7 2 1 9 9 N 1.36942 * 120.00413 * 343.07512 * 7 2 1 10 10 C 1.46921 * 120.62926 * 331.83997 * 9 7 2 11 11 C 1.53196 * 108.77705 * 233.62739 * 10 9 7 12 12 C 1.53037 * 109.30687 * 305.36465 * 11 10 9 13 13 N 1.46510 * 109.45648 * 181.38498 * 12 11 10 14 14 C 1.34774 * 119.99911 * 154.97226 * 13 12 11 15 15 O 1.21588 * 120.00138 * 0.02562 * 14 13 12 16 16 N 1.34772 * 119.99674 * 180.27478 * 14 13 12 17 17 C 1.39510 * 119.99975 * 179.72404 * 16 14 13 18 18 C 1.36104 * 126.20967 * 0.02910 * 17 16 14 19 19 C 1.39769 * 107.82020 * 180.02562 * 18 17 16 20 20 N 1.30844 * 108.32526 * 359.97438 * 19 18 17 21 21 N 1.35243 * 126.21626 * 179.71489 * 17 16 14 22 22 C 1.46505 * 126.04442 * 359.97438 * 21 17 16 23 23 C 1.53774 * 113.61609 * 219.13659 * 22 21 17 24 24 C 1.53953 * 87.02156 * 220.05265 * 23 22 21 25 25 C 1.53776 * 87.10889 * 25.36260 * 24 23 22 26 26 C 1.53038 * 109.52949 * 61.37224 * 12 11 10 27 27 C 1.46920 * 120.63188 * 151.85548 * 9 7 2 28 28 H 0.97003 * 120.00287 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.59076 * 113.83397 * 10 9 7 30 30 H 1.09005 * 109.70344 * 353.48094 * 10 9 7 31 31 H 1.08997 * 109.49737 * 185.41290 * 11 10 9 32 32 H 1.09001 * 109.49335 * 65.31351 * 11 10 9 33 33 H 1.08995 * 109.46356 * 301.35483 * 12 11 10 34 34 H 0.97001 * 119.99499 * 334.96706 * 13 12 11 35 35 H 0.96999 * 120.00249 * 359.71995 * 16 14 13 36 36 H 1.07998 * 126.09234 * 359.95632 * 18 17 16 37 37 H 1.08004 * 125.83595 * 180.02562 * 19 18 17 38 38 H 1.08996 * 112.85077 * 350.33658 * 22 21 17 39 39 H 1.09010 * 113.61752 * 334.57315 * 23 22 21 40 40 H 1.09000 * 113.61346 * 105.47272 * 23 22 21 41 41 H 1.09000 * 113.53635 * 270.81090 * 24 23 22 42 42 H 1.08997 * 113.74565 * 139.94808 * 24 23 22 43 43 H 1.09005 * 113.61192 * 220.08667 * 25 24 23 44 44 H 1.09001 * 113.61730 * 89.19472 * 25 24 23 45 45 H 1.09000 * 109.49810 * 58.57841 * 26 12 11 46 46 H 1.09008 * 109.49748 * 178.67442 * 26 12 11 47 47 H 1.09004 * 109.59191 * 246.16240 * 27 9 7 48 48 H 1.09003 * 109.58961 * 6.44315 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1040 1.6964 -1.2124 5 1 1.2851 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2226 -0.2717 9 7 1.3700 -2.3623 0.3463 10 6 0.2262 -2.3400 1.2680 11 6 0.4980 -3.3183 2.4151 12 6 0.8131 -4.7001 1.8377 13 7 1.0412 -5.6462 2.9328 14 6 0.8379 -6.9642 2.7380 15 8 0.4655 -7.3681 1.6533 16 7 1.0424 -7.8339 3.7470 17 6 0.8264 -9.1976 3.5471 18 6 0.4118 -9.7851 2.3915 19 6 0.3223 -11.1611 2.6194 20 7 0.6683 -11.3962 3.8591 21 7 0.9965 -10.1766 4.4646 22 6 1.4421 -9.9933 5.8482 23 6 2.4028 -11.0903 6.3364 24 6 1.6516 -11.0383 7.6793 25 6 0.4396 -10.5131 6.8920 26 6 2.0685 -4.6164 0.9664 27 6 1.8143 -3.6530 -0.1972 28 1 -0.4851 0.8400 -0.0004 29 1 -0.6769 -2.6411 0.7372 30 1 0.0964 -1.3345 1.6685 31 1 -0.3824 -3.3832 3.0543 32 1 1.3477 -2.9660 3.0000 33 1 -0.0268 -5.0409 1.2325 34 1 1.3387 -5.3240 3.7980 35 1 1.3399 -7.5118 4.6123 36 1 0.1902 -9.2781 1.4640 37 1 0.0200 -11.9036 1.8956 38 1 1.7960 -8.9821 6.0485 39 1 2.2888 -12.0372 5.8087 40 1 3.4407 -10.7638 6.4027 41 1 2.0640 -10.3133 8.3810 42 1 1.4890 -12.0176 8.1294 43 1 -0.1053 -9.7214 7.4063 44 1 -0.2124 -11.3018 6.5165 45 1 2.9032 -4.2518 1.5652 46 1 2.3060 -5.6054 0.5744 47 1 1.0408 -4.0614 -0.8476 48 1 2.7335 -3.5131 -0.7660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934707374.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = 82.386269 kcal Electronic energy + Delta-G solvation = -28592.079074 eV Core-core repulsion = 24684.635201 eV Total energy + Delta-G solvation = -3907.443873 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.62661 -41.16251 -39.36292 -39.06186 -36.21747 -35.92143 -33.92742 -32.52509 -31.82435 -31.22874 -29.65374 -26.92051 -26.67865 -26.20238 -24.32817 -23.85021 -23.00202 -22.31194 -21.48049 -20.87348 -20.35041 -19.50612 -19.06799 -18.37243 -17.15778 -16.91163 -16.71199 -16.39708 -16.09544 -15.82926 -15.75296 -15.37260 -15.26888 -14.86787 -14.75543 -14.37808 -14.12634 -14.03295 -13.96411 -13.54141 -13.25270 -13.19411 -12.99074 -12.57747 -12.53784 -12.29098 -12.14891 -12.11996 -12.01280 -11.89262 -11.84501 -11.57589 -11.55763 -11.43070 -11.29759 -11.12282 -10.53961 -10.16183 -9.85524 -9.06274 -8.69404 -7.86684 -5.32145 0.77355 0.88447 1.50272 1.51283 1.58705 1.80433 1.81894 2.19463 2.53197 2.97924 3.29789 3.36205 3.50748 3.65640 3.68045 3.83691 3.88671 4.03181 4.05292 4.21774 4.34179 4.45021 4.48522 4.61481 4.66689 4.73472 4.77312 4.78678 4.86100 4.93291 4.94736 5.01566 5.03346 5.04006 5.07969 5.14104 5.17055 5.31443 5.44011 5.48501 5.52107 5.65882 5.69111 5.77717 5.84056 6.11133 6.40374 6.69207 6.92668 7.16022 7.37110 7.85640 8.38092 9.20249 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.025912 B = 0.002145 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.328344 B =13047.708491 C =13580.693004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.050 4.050 3 Si 0.968 3.032 4 H -0.278 1.278 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.127 4.127 12 C 0.182 3.818 13 N -0.712 5.712 14 C 0.710 3.290 15 O -0.595 6.595 16 N -0.646 5.646 17 C 0.321 3.679 18 C -0.311 4.311 19 C 0.058 3.942 20 N -0.309 5.309 21 N -0.372 5.372 22 C 0.114 3.886 23 C -0.138 4.138 24 C -0.125 4.125 25 C -0.143 4.143 26 C -0.124 4.124 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.005 1.005 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.414 0.586 35 H 0.422 0.578 36 H 0.152 0.848 37 H 0.209 0.791 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.107 0.893 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.074 0.926 45 H 0.068 0.932 46 H 0.060 0.940 47 H 0.008 0.992 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.961 -20.329 18.331 27.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.245 4.245 3 Si 0.796 3.204 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.051 3.949 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.367 5.367 14 C 0.409 3.591 15 O -0.472 6.472 16 N -0.298 5.298 17 C 0.099 3.901 18 C -0.343 4.343 19 C -0.128 4.128 20 N -0.131 5.131 21 N -0.160 5.160 22 C 0.013 3.987 23 C -0.177 4.177 24 C -0.163 4.163 25 C -0.181 4.181 26 C -0.165 4.165 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.251 0.749 35 H 0.261 0.739 36 H 0.169 0.831 37 H 0.225 0.775 38 H 0.159 0.841 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.100 0.900 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.086 0.914 46 H 0.078 0.922 47 H 0.026 0.974 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.744 -21.324 18.355 28.384 hybrid contribution 0.164 1.951 -0.507 2.023 sum 3.908 -19.373 17.848 26.630 Atomic orbital electron populations 1.70171 1.06649 1.26008 1.55274 1.25810 0.96040 1.01512 1.01149 0.85333 0.77527 0.79144 0.78364 1.20421 1.22165 1.20067 1.19474 0.92856 0.85844 1.41161 0.91520 1.44351 1.35945 1.02169 1.50787 1.20578 0.87727 0.97810 0.88767 1.22265 1.02178 0.93292 0.98964 1.20596 0.97276 0.87499 0.86922 1.45064 1.71804 1.03252 1.16617 1.15736 0.78527 0.81555 0.83250 1.90890 1.53115 1.77535 1.25651 1.41600 1.70395 1.02182 1.15633 1.17749 0.99922 0.81038 0.91347 1.21652 1.18399 0.94430 0.99864 1.24140 0.98141 0.96295 0.94180 1.77299 1.24397 1.01864 1.09525 1.48879 1.54368 1.02394 1.10337 1.23481 0.98307 1.02120 0.74778 1.23292 0.98914 0.98364 0.97094 1.22743 0.94901 1.03110 0.95554 1.23340 0.97365 1.01498 0.95918 1.22195 0.97838 0.98679 0.97755 1.20967 0.97391 0.85926 0.93922 0.94022 0.98690 0.91790 0.90265 0.90841 0.92019 0.74926 0.73912 0.83088 0.77471 0.84080 0.90190 0.89552 0.87461 0.90046 0.89390 0.90740 0.91358 0.92166 0.97424 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.35 11.19 21.65 0.24 -54.11 16 2 C -0.05 -2.72 4.92 84.86 0.42 -2.30 16 3 Si 0.97 43.80 29.59 68.60 2.03 45.83 16 4 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 5 H -0.30 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.26 -14.18 9.58 84.03 0.81 -13.37 16 8 H 0.07 3.50 7.89 -2.91 -0.02 3.47 16 9 N -0.61 -29.97 2.99 -699.09 -2.09 -32.06 16 10 C 0.18 8.18 5.30 86.36 0.46 8.64 16 11 C -0.13 -4.19 5.55 30.67 0.17 -4.02 16 12 C 0.18 5.73 2.42 45.01 0.11 5.84 16 13 N -0.71 -16.52 5.08 -457.69 -2.33 -18.84 16 14 C 0.71 18.89 8.49 179.06 1.52 20.42 16 15 O -0.59 -21.21 13.13 -3.99 -0.05 -21.26 16 16 N -0.65 -12.81 5.42 -322.31 -1.75 -14.56 16 17 C 0.32 7.80 7.66 131.31 1.01 8.80 16 18 C -0.31 -8.74 9.65 22.14 0.21 -8.53 16 19 C 0.06 1.36 12.01 85.21 1.02 2.39 16 20 N -0.31 -7.40 12.02 -57.08 -0.69 -8.08 16 21 N -0.37 -7.74 3.69 -321.96 -1.19 -8.93 16 22 C 0.11 1.45 4.62 45.51 0.21 1.66 16 23 C -0.14 -1.57 7.78 31.18 0.24 -1.32 16 24 C -0.13 -0.92 8.09 31.18 0.25 -0.67 16 25 C -0.14 -1.59 7.88 31.12 0.25 -1.34 16 26 C -0.12 -4.22 5.65 30.67 0.17 -4.05 16 27 C 0.14 6.08 6.52 86.36 0.56 6.64 16 28 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 29 H -0.01 -0.25 8.14 -2.39 -0.02 -0.27 16 30 H 0.06 3.31 6.06 -2.38 -0.01 3.30 16 31 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 32 H 0.07 2.27 8.14 -2.39 -0.02 2.26 16 33 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 34 H 0.41 6.38 8.62 -92.71 -0.80 5.59 16 35 H 0.42 4.67 7.73 -92.71 -0.72 3.95 16 36 H 0.15 4.98 5.82 -2.91 -0.02 4.97 16 37 H 0.21 3.48 8.06 -2.91 -0.02 3.45 16 38 H 0.14 0.96 7.12 -2.39 -0.02 0.94 16 39 H 0.08 1.27 7.74 -2.38 -0.02 1.25 16 40 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.09 0.74 8.14 -2.38 -0.02 0.73 16 44 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 46 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 47 H 0.01 0.35 8.14 -2.38 -0.02 0.33 16 48 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 Total: -1.00 -72.67 382.98 1.06 -71.61 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: -0.53 Total: 21.61 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 7.41 Total: 18.78 kcal Atomic # 7 Polarization: -128.78 SS G_CDS: -7.80 Total: -136.58 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -72.67 1.06 -71.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934707374.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.998 kcal (2) G-P(sol) polarization free energy of solvation -72.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds