Wall clock time and date at job start Tue Mar 31 2020 18:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48504 * 109.46947 * 269.99717 * 3 2 1 5 5 H 1.48504 * 109.47355 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.46945 * 150.00055 * 3 2 1 7 7 C 1.37868 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00564 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47512 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00189 * 169.99789 * 10 9 7 12 12 C 1.53241 * 109.34255 * 187.25549 * 11 10 9 13 13 N 1.47080 * 108.51840 * 306.17109 * 12 11 10 14 14 C 1.34779 * 120.87955 * 231.18523 * 13 12 11 15 15 O 1.21587 * 119.99600 * 185.00053 * 14 13 12 16 16 N 1.34774 * 120.00160 * 4.99482 * 14 13 12 17 17 C 1.39506 * 119.99966 * 174.76799 * 16 14 13 18 18 C 1.36107 * 126.21425 * 0.03063 * 17 16 14 19 19 C 1.39765 * 107.82465 * 179.97438 * 18 17 16 20 20 N 1.30850 * 108.31969 * 359.71570 * 19 18 17 21 21 N 1.35239 * 126.21504 * 180.02562 * 17 16 14 22 22 C 1.46508 * 126.04594 * 0.02562 * 21 17 16 23 23 C 1.53783 * 113.61392 * 120.00082 * 22 21 17 24 24 C 1.53778 * 87.08016 * 89.11684 * 23 22 21 25 25 C 1.53779 * 87.17673 * 25.38890 * 24 23 22 26 26 C 1.47076 * 118.23577 * 51.45793 * 13 12 11 27 27 C 1.46895 * 111.00044 * 294.30266 * 10 9 7 28 28 H 0.97001 * 119.99572 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47466 * 59.99925 * 9 7 2 30 30 H 1.09001 * 109.47085 * 300.00137 * 9 7 2 31 31 H 1.09008 * 109.49330 * 67.29423 * 11 10 9 32 32 H 1.09002 * 109.49672 * 307.22036 * 11 10 9 33 33 H 1.09003 * 109.62609 * 186.46463 * 12 11 10 34 34 H 1.08995 * 109.62977 * 65.88037 * 12 11 10 35 35 H 0.97001 * 120.00182 * 354.77671 * 16 14 13 36 36 H 1.07994 * 126.08591 * 359.95451 * 18 17 16 37 37 H 1.07999 * 125.83963 * 180.02562 * 19 18 17 38 38 H 1.08998 * 112.84625 * 348.80330 * 22 21 17 39 39 H 1.08995 * 113.61491 * 334.56424 * 23 22 21 40 40 H 1.08999 * 113.61072 * 203.66419 * 23 22 21 41 41 H 1.08998 * 113.61334 * 139.98204 * 24 23 22 42 42 H 1.08996 * 113.61384 * 270.79634 * 24 23 22 43 43 H 1.09000 * 113.61212 * 89.15802 * 25 24 23 44 44 H 1.08993 * 113.61549 * 220.05926 * 25 24 23 45 45 H 1.09006 * 109.62938 * 68.25158 * 26 13 12 46 46 H 1.09004 * 109.62587 * 188.82629 * 26 13 12 47 47 H 1.08999 * 109.49197 * 292.70139 * 27 10 9 48 48 H 1.08993 * 109.49334 * 52.76026 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5639 -6.0031 0.4116 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4502 15 8 4.5259 -7.1000 -2.3534 16 7 3.0603 -8.2520 -1.1458 17 6 3.2373 -9.3888 -1.9349 18 6 4.0334 -9.4885 -3.0343 19 6 3.9234 -10.7925 -3.5253 20 7 3.1011 -11.4549 -2.7526 21 7 2.6491 -10.5919 -1.7463 22 6 1.7101 -10.9340 -0.6749 23 6 0.3323 -11.3881 -1.1850 24 6 0.9015 -12.8164 -1.2148 25 6 1.8927 -12.3624 -0.1303 26 6 4.0838 -4.7089 -1.1338 27 6 2.9768 -3.6490 -1.2493 28 1 -0.4849 0.8401 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5566 0.8903 31 1 0.8797 -5.1263 -0.6112 32 1 0.9161 -4.8190 1.1422 33 1 2.0632 -6.9694 0.4740 34 1 3.1395 -5.8264 1.3201 35 1 2.4680 -8.2819 -0.3782 36 1 4.6414 -8.7003 -3.4530 37 1 4.4340 -11.1873 -4.3912 38 1 1.6585 -10.1712 0.1020 39 1 0.0813 -10.9975 -2.1711 40 1 -0.4687 -11.2524 -0.4584 41 1 0.1970 -13.5744 -0.8726 42 1 1.3777 -13.0770 -2.1599 43 1 1.5190 -12.4935 0.8853 44 1 2.8996 -12.7571 -0.2661 45 1 4.8028 -4.4102 -0.3708 46 1 4.5887 -4.8191 -2.0935 47 1 2.3150 -3.8993 -2.0784 48 1 3.4269 -2.6720 -1.4252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934728739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:59 Heat of formation + Delta-G solvation = 106.391061 kcal Electronic energy + Delta-G solvation = -28934.612925 eV Core-core repulsion = 25028.209977 eV Total energy + Delta-G solvation = -3906.402947 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.80645 -40.31493 -38.61959 -37.79018 -35.12358 -34.53916 -32.47229 -31.55844 -30.83362 -29.21840 -27.97094 -26.10947 -25.73046 -25.60569 -23.58090 -22.69563 -21.82049 -21.69350 -20.60754 -19.73721 -19.18845 -18.17043 -17.37147 -16.43335 -16.02857 -16.01773 -15.78603 -15.34233 -14.97770 -14.78347 -14.58720 -14.33422 -14.06009 -13.93315 -13.73096 -13.66039 -13.22734 -13.03333 -12.84783 -12.60058 -12.35266 -12.09290 -11.40653 -11.33439 -11.25358 -11.11308 -10.99043 -10.95605 -10.91769 -10.83806 -10.72955 -10.64906 -10.54083 -10.02383 -9.93794 -9.34770 -9.08784 -8.71239 -8.51965 -8.06830 -7.43462 -6.11535 -4.13689 1.69567 1.79256 2.59781 2.76646 3.19494 3.27083 3.33813 3.37453 3.51678 3.88912 4.12609 4.33617 4.33845 4.45467 4.60722 4.85157 4.90259 4.99700 5.09904 5.17971 5.19533 5.26210 5.31080 5.38044 5.44685 5.50858 5.58360 5.60081 5.65996 5.70205 5.78680 5.83366 5.90506 6.02520 6.05558 6.07759 6.29628 6.44518 6.52032 6.70935 6.76170 6.97978 7.12768 7.19893 7.54341 7.67358 7.75308 7.92177 8.03678 8.32854 8.39537 8.93476 9.51351 10.99271 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.002363 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.326649 B =11847.401614 C =12661.410480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.065 0.935 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.040 3.960 12 C 0.115 3.885 13 N -0.616 5.616 14 C 0.715 3.285 15 O -0.562 6.562 16 N -0.665 5.665 17 C 0.332 3.668 18 C -0.282 4.282 19 C 0.059 3.941 20 N -0.293 5.293 21 N -0.373 5.373 22 C 0.129 3.871 23 C -0.148 4.148 24 C -0.135 4.135 25 C -0.139 4.139 26 C 0.133 3.867 27 C 0.050 3.950 28 H 0.262 0.738 29 H -0.009 1.009 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.083 0.917 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.404 0.596 36 H 0.174 0.826 37 H 0.185 0.815 38 H 0.101 0.899 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.026 0.974 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.835 -23.239 -0.031 23.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.549 4.549 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.260 5.260 11 C -0.090 4.090 12 C -0.008 4.008 13 N -0.353 5.353 14 C 0.417 3.583 15 O -0.438 6.438 16 N -0.317 5.317 17 C 0.112 3.888 18 C -0.314 4.314 19 C -0.127 4.127 20 N -0.115 5.115 21 N -0.161 5.161 22 C 0.026 3.974 23 C -0.186 4.186 24 C -0.172 4.172 25 C -0.177 4.177 26 C 0.011 3.989 27 C -0.080 4.080 28 H 0.072 0.928 29 H 0.009 0.991 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.242 0.758 36 H 0.191 0.809 37 H 0.201 0.799 38 H 0.119 0.881 39 H 0.093 0.907 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.097 0.903 45 H 0.094 0.906 46 H 0.110 0.890 47 H 0.045 0.955 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.942 -24.053 0.041 24.233 hybrid contribution -0.376 1.666 -0.189 1.718 sum 2.566 -22.388 -0.148 22.535 Atomic orbital electron populations 1.69958 1.06113 1.26934 1.50722 1.24994 0.94875 0.99418 0.95269 0.86486 0.79803 0.82958 0.78118 1.20667 1.21248 1.19697 1.21123 0.93519 0.89804 1.50473 0.91721 1.19727 0.89955 0.87151 0.96211 1.62089 1.27923 1.02371 1.33592 1.22382 0.94583 0.90913 1.01073 1.21858 0.92030 0.98157 0.88764 1.47431 1.49242 1.07579 1.31026 1.15465 0.81023 0.79498 0.82354 1.90854 1.36548 1.83491 1.32859 1.42111 1.49397 1.08634 1.31595 1.17672 0.96434 0.81077 0.93657 1.21642 1.10196 0.99750 0.99851 1.23779 0.96804 0.93060 0.99041 1.77370 1.18278 1.15041 1.00792 1.48234 1.37193 1.06198 1.24453 1.22113 0.89435 0.98716 0.87162 1.23331 0.95172 0.97524 1.02615 1.22890 0.98023 0.96046 1.00259 1.23213 1.01569 0.93623 0.99266 1.21957 0.95500 0.79782 1.01668 1.22475 0.95159 0.99251 0.91077 0.92833 0.99077 0.95026 0.95419 0.89868 0.91726 0.89972 0.75818 0.80889 0.79859 0.88090 0.90652 0.88493 0.91395 0.88487 0.88672 0.90282 0.90622 0.88969 0.95550 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.93 29.54 -169.99 -5.02 15.90 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.51 -13.59 8.41 -34.45 -0.29 -13.88 16 8 H 0.06 1.69 7.13 -52.48 -0.37 1.32 16 9 C 0.19 4.74 4.72 -4.98 -0.02 4.72 16 10 N -0.53 -10.42 4.62 -235.47 -1.09 -11.50 16 11 C 0.04 0.62 5.62 -3.70 -0.02 0.60 16 12 C 0.12 1.37 6.59 -3.60 -0.02 1.35 16 13 N -0.62 -8.61 3.00 -177.91 -0.53 -9.15 16 14 C 0.72 10.46 8.27 -86.92 -0.72 9.74 16 15 O -0.56 -9.73 12.97 5.29 0.07 -9.67 16 16 N -0.67 -7.96 5.33 -15.85 -0.08 -8.04 16 17 C 0.33 4.32 7.66 -153.15 -1.17 3.15 16 18 C -0.28 -3.89 9.65 -39.78 -0.38 -4.27 16 19 C 0.06 0.69 12.01 -17.40 -0.21 0.48 16 20 N -0.29 -3.59 10.90 30.60 0.33 -3.25 16 21 N -0.37 -4.27 3.70 -53.02 -0.20 -4.46 16 22 C 0.13 1.07 4.78 -67.02 -0.32 0.75 16 23 C -0.15 -1.10 7.88 -25.92 -0.20 -1.31 16 24 C -0.13 -1.01 7.69 -25.92 -0.20 -1.21 16 25 C -0.14 -0.99 7.69 -25.83 -0.20 -1.19 16 26 C 0.13 2.02 6.61 -3.37 -0.02 2.00 16 27 C 0.05 0.89 5.47 -3.46 -0.02 0.87 16 28 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 29 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 30 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 31 H 0.03 0.45 8.14 -51.92 -0.42 0.02 16 32 H 0.08 1.21 7.99 -51.93 -0.41 0.80 16 33 H 0.06 0.55 5.64 -51.93 -0.29 0.26 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.40 3.67 5.23 -40.82 -0.21 3.46 16 36 H 0.17 2.64 5.84 -52.49 -0.31 2.34 16 37 H 0.18 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.10 0.63 7.15 -51.93 -0.37 0.26 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.10 0.91 7.09 -51.93 -0.37 0.54 16 43 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 46 H 0.09 1.40 7.09 -51.93 -0.37 1.03 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.10 1.94 6.67 -51.93 -0.35 1.59 16 LS Contribution 378.75 15.07 5.71 5.71 Total: -1.00 -32.01 378.75 -11.23 -43.24 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.25 Total: 3.09 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -3.90 Total: 3.23 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.83 Total: -61.51 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.07 Total: -9.67 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.01 -11.23 -43.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934728739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.635 kcal (2) G-P(sol) polarization free energy of solvation -32.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds