Wall clock time and date at job start Tue Mar 31 2020 18:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86801 * 119.99653 * 2 1 4 4 H 1.48504 * 109.46947 * 269.99717 * 3 2 1 5 5 H 1.48504 * 109.47355 * 29.99910 * 3 2 1 6 6 H 1.48500 * 109.46945 * 150.00055 * 3 2 1 7 7 C 1.37868 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99635 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00564 * 0.02562 * 7 2 1 10 10 N 1.46898 * 109.47512 * 179.97438 * 9 7 2 11 11 C 1.46898 * 111.00189 * 169.99789 * 10 9 7 12 12 C 1.53241 * 109.34255 * 187.25549 * 11 10 9 13 13 N 1.47080 * 108.51840 * 306.17109 * 12 11 10 14 14 C 1.34779 * 120.87955 * 231.18523 * 13 12 11 15 15 O 1.21587 * 119.99600 * 185.00053 * 14 13 12 16 16 N 1.34774 * 120.00160 * 4.99482 * 14 13 12 17 17 C 1.39506 * 119.99966 * 174.76799 * 16 14 13 18 18 C 1.36107 * 126.21425 * 0.03063 * 17 16 14 19 19 C 1.39765 * 107.82465 * 179.97438 * 18 17 16 20 20 N 1.30850 * 108.31969 * 359.71570 * 19 18 17 21 21 N 1.35239 * 126.21504 * 180.02562 * 17 16 14 22 22 C 1.46508 * 126.04594 * 0.02562 * 21 17 16 23 23 C 1.53783 * 113.61392 * 120.00082 * 22 21 17 24 24 C 1.53778 * 87.08016 * 89.11684 * 23 22 21 25 25 C 1.53779 * 87.17673 * 25.38890 * 24 23 22 26 26 C 1.47076 * 118.23577 * 51.45793 * 13 12 11 27 27 C 1.46895 * 111.00044 * 294.30266 * 10 9 7 28 28 H 0.97001 * 119.99572 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47466 * 59.99925 * 9 7 2 30 30 H 1.09001 * 109.47085 * 300.00137 * 9 7 2 31 31 H 1.09008 * 109.49330 * 67.29423 * 11 10 9 32 32 H 1.09002 * 109.49672 * 307.22036 * 11 10 9 33 33 H 1.09003 * 109.62609 * 186.46463 * 12 11 10 34 34 H 1.08995 * 109.62977 * 65.88037 * 12 11 10 35 35 H 0.97001 * 120.00182 * 354.77671 * 16 14 13 36 36 H 1.07994 * 126.08591 * 359.95451 * 18 17 16 37 37 H 1.07999 * 125.83963 * 180.02562 * 19 18 17 38 38 H 1.08998 * 112.84625 * 348.80330 * 22 21 17 39 39 H 1.08995 * 113.61491 * 334.56424 * 23 22 21 40 40 H 1.08999 * 113.61072 * 203.66419 * 23 22 21 41 41 H 1.08998 * 113.61334 * 139.98204 * 24 23 22 42 42 H 1.08996 * 113.61384 * 270.79634 * 24 23 22 43 43 H 1.09000 * 113.61212 * 89.15802 * 25 24 23 44 44 H 1.08993 * 113.61549 * 220.05926 * 25 24 23 45 45 H 1.09006 * 109.62938 * 68.25158 * 26 13 12 46 46 H 1.09004 * 109.62587 * 188.82629 * 26 13 12 47 47 H 1.08999 * 109.49197 * 292.70139 * 27 10 9 48 48 H 1.08993 * 109.49334 * 52.76026 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2058 -3.6156 0.0005 11 6 1.5213 -4.8934 0.2387 12 6 2.5639 -6.0031 0.4116 13 7 3.4617 -5.9862 -0.7533 14 6 3.7120 -7.1123 -1.4502 15 8 4.5259 -7.1000 -2.3534 16 7 3.0603 -8.2520 -1.1458 17 6 3.2373 -9.3888 -1.9349 18 6 4.0334 -9.4885 -3.0343 19 6 3.9234 -10.7925 -3.5253 20 7 3.1011 -11.4549 -2.7526 21 7 2.6491 -10.5919 -1.7463 22 6 1.7101 -10.9340 -0.6749 23 6 0.3323 -11.3881 -1.1850 24 6 0.9015 -12.8164 -1.2148 25 6 1.8927 -12.3624 -0.1303 26 6 4.0838 -4.7089 -1.1338 27 6 2.9768 -3.6490 -1.2493 28 1 -0.4849 0.8401 0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6242 -2.5566 0.8903 31 1 0.8797 -5.1263 -0.6112 32 1 0.9161 -4.8190 1.1422 33 1 2.0632 -6.9694 0.4740 34 1 3.1395 -5.8264 1.3201 35 1 2.4680 -8.2819 -0.3782 36 1 4.6414 -8.7003 -3.4530 37 1 4.4340 -11.1873 -4.3912 38 1 1.6585 -10.1712 0.1020 39 1 0.0813 -10.9975 -2.1711 40 1 -0.4687 -11.2524 -0.4584 41 1 0.1970 -13.5744 -0.8726 42 1 1.3777 -13.0770 -2.1599 43 1 1.5190 -12.4935 0.8853 44 1 2.8996 -12.7571 -0.2661 45 1 4.8028 -4.4102 -0.3708 46 1 4.5887 -4.8191 -2.0935 47 1 2.3150 -3.8993 -2.0784 48 1 3.4269 -2.6720 -1.4252 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934728739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:58 Heat of formation + Delta-G solvation = 86.437600 kcal Electronic energy + Delta-G solvation = -28935.478172 eV Core-core repulsion = 25028.209977 eV Total energy + Delta-G solvation = -3907.268194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.74488 -41.40682 -39.40313 -39.02917 -36.25583 -35.99274 -34.38953 -32.47857 -32.02513 -30.48225 -29.41325 -27.25501 -26.66181 -26.39315 -24.87721 -24.15624 -23.13285 -22.63192 -21.78011 -20.67108 -20.34136 -19.09337 -18.52389 -18.22931 -17.17899 -17.06668 -16.65333 -16.45982 -16.14214 -15.98187 -15.92424 -15.44489 -15.42798 -15.27249 -15.01139 -14.55445 -14.51756 -14.07091 -13.94603 -13.58034 -13.36700 -13.29852 -13.11692 -12.75992 -12.60150 -12.41341 -12.34268 -12.21735 -12.14017 -11.95166 -11.75759 -11.68164 -11.57906 -11.38148 -11.28872 -11.13163 -10.61669 -10.01312 -9.85572 -9.14123 -9.01392 -8.20653 -6.30083 0.73175 0.81755 1.43493 1.43802 1.55326 1.69306 1.76032 2.12118 2.40905 2.52365 3.11945 3.20691 3.26335 3.52787 3.75185 3.84050 3.89383 3.98654 4.01099 4.08723 4.22816 4.23474 4.37455 4.42717 4.56910 4.61344 4.68382 4.74177 4.77733 4.81222 4.90203 4.94432 4.98609 4.99786 5.01186 5.03718 5.13213 5.18896 5.24391 5.39928 5.40896 5.61216 5.66801 5.81042 6.03373 6.06882 6.23437 6.53787 6.58605 6.79568 6.85836 7.21346 7.39944 8.90383 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.022425 B = 0.002363 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.326649 B =11847.401614 C =12661.410480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.209 3.791 10 N -0.537 5.537 11 C 0.037 3.963 12 C 0.122 3.878 13 N -0.617 5.617 14 C 0.715 3.285 15 O -0.592 6.592 16 N -0.649 5.649 17 C 0.322 3.678 18 C -0.307 4.307 19 C 0.058 3.942 20 N -0.304 5.304 21 N -0.367 5.367 22 C 0.110 3.890 23 C -0.141 4.141 24 C -0.138 4.138 25 C -0.129 4.129 26 C 0.146 3.854 27 C 0.055 3.945 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.012 0.988 31 H 0.019 0.981 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.419 0.581 36 H 0.155 0.845 37 H 0.211 0.789 38 H 0.127 0.873 39 H 0.053 0.947 40 H 0.124 0.876 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.124 0.876 44 H 0.061 0.939 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.010 0.990 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.152 -24.536 1.568 24.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.083 3.917 10 N -0.262 5.262 11 C -0.092 4.092 12 C 0.000 4.000 13 N -0.353 5.353 14 C 0.416 3.584 15 O -0.470 6.470 16 N -0.303 5.303 17 C 0.101 3.899 18 C -0.339 4.339 19 C -0.127 4.127 20 N -0.125 5.125 21 N -0.155 5.155 22 C 0.008 3.992 23 C -0.180 4.180 24 C -0.175 4.175 25 C -0.167 4.167 26 C 0.023 3.977 27 C -0.074 4.074 28 H 0.072 0.928 29 H -0.024 1.024 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.111 0.889 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.259 0.741 36 H 0.172 0.828 37 H 0.228 0.772 38 H 0.145 0.855 39 H 0.072 0.928 40 H 0.142 0.858 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.143 0.857 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.029 0.971 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.243 -25.402 1.671 25.663 hybrid contribution -0.528 1.979 -0.706 2.166 sum 2.716 -23.423 0.965 23.600 Atomic orbital electron populations 1.70081 1.07715 1.27860 1.51894 1.25880 0.95683 1.03135 0.94898 0.85422 0.78711 0.78460 0.78279 1.20145 1.20991 1.18648 1.21474 0.93796 0.90939 1.49817 0.91494 1.19364 0.89991 0.88738 0.93601 1.62000 1.27042 1.03019 1.34136 1.22530 0.95664 0.89929 1.01114 1.21967 0.91044 0.98668 0.88317 1.47405 1.49429 1.06962 1.31504 1.15526 0.80902 0.80043 0.81900 1.90852 1.37938 1.84071 1.34089 1.41807 1.49054 1.07621 1.31805 1.17719 0.96684 0.81771 0.93745 1.21628 1.11069 1.00282 1.00948 1.24186 0.96596 0.92260 0.99670 1.77354 1.18429 1.15562 1.01198 1.48480 1.37029 1.05344 1.24664 1.22598 0.89228 1.00354 0.86986 1.23355 0.95407 0.97019 1.02180 1.22858 0.98467 0.96711 0.99483 1.23227 1.00552 0.92349 1.00551 1.21723 0.94279 0.79492 1.02202 1.22397 0.95452 0.99597 0.89973 0.92754 1.02446 0.96984 0.96287 0.88874 0.87572 0.88469 0.74052 0.82788 0.77248 0.85528 0.92822 0.85752 0.89773 0.90885 0.85743 0.92037 0.89499 0.89037 0.97134 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.00 0.12 5.46 84.65 0.46 0.58 16 3 Si 0.97 43.00 29.54 68.60 2.03 45.03 16 4 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 7 C -0.52 -28.17 8.41 25.60 0.22 -27.95 16 8 H 0.07 3.51 7.13 -2.91 -0.02 3.49 16 9 C 0.21 10.49 4.72 85.55 0.40 10.90 16 10 N -0.54 -20.92 4.62 -898.90 -4.15 -25.07 16 11 C 0.04 1.08 5.62 86.38 0.49 1.57 16 12 C 0.12 2.55 6.59 86.35 0.57 3.12 16 13 N -0.62 -16.13 3.00 -835.03 -2.51 -18.64 16 14 C 0.72 19.91 8.27 179.05 1.48 21.39 16 15 O -0.59 -20.39 12.97 -3.99 -0.05 -20.44 16 16 N -0.65 -14.19 5.33 -322.31 -1.72 -15.91 16 17 C 0.32 8.02 7.66 131.31 1.01 9.03 16 18 C -0.31 -8.45 9.65 22.14 0.21 -8.23 16 19 C 0.06 1.34 12.01 85.21 1.02 2.36 16 20 N -0.30 -7.21 10.90 -57.09 -0.62 -7.83 16 21 N -0.37 -7.88 3.70 -321.65 -1.19 -9.07 16 22 C 0.11 1.53 4.78 45.58 0.22 1.75 16 23 C -0.14 -1.76 7.88 31.12 0.25 -1.51 16 24 C -0.14 -1.80 7.69 31.12 0.24 -1.56 16 25 C -0.13 -1.49 7.69 31.18 0.24 -1.25 16 26 C 0.15 4.30 6.61 86.50 0.57 4.87 16 27 C 0.05 2.01 5.47 86.54 0.47 2.48 16 28 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 29 H -0.04 -2.36 8.12 -2.39 -0.02 -2.38 16 30 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 31 H 0.02 0.60 8.14 -2.38 -0.02 0.58 16 32 H 0.09 2.57 7.99 -2.39 -0.02 2.55 16 33 H 0.11 1.34 5.64 -2.39 -0.01 1.33 16 34 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.42 6.14 5.23 -92.71 -0.48 5.66 16 36 H 0.15 4.86 5.84 -2.91 -0.02 4.84 16 37 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.13 1.07 7.15 -2.39 -0.02 1.05 16 39 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.12 0.87 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.07 1.32 7.09 -2.39 -0.02 1.30 16 43 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 2.40 8.14 -2.38 -0.02 2.38 16 46 H 0.09 2.74 7.09 -2.38 -0.02 2.73 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.08 3.28 6.67 -2.39 -0.02 3.27 16 Total: -1.00 -71.86 378.75 0.41 -71.45 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: 0.49 Total: 17.47 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: 7.85 Total: 17.53 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -9.91 Total: -131.04 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.05 Total: -20.44 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -71.86 0.41 -71.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934728739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.890 kcal (2) G-P(sol) polarization free energy of solvation -71.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds