Wall clock time and date at job start Tue Mar 31 2020 18:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47023 * 299.99761 * 3 2 1 6 6 H 1.48496 * 109.47359 * 59.99871 * 3 2 1 7 7 C 1.38816 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00588 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49038 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11859 * 155.35653 * 10 9 7 12 12 N 1.46899 * 113.74003 * 137.95025 * 11 10 9 13 13 C 1.46910 * 110.99797 * 181.92590 * 12 11 10 14 14 C 1.53236 * 109.33889 * 187.25377 * 13 12 11 15 15 N 1.47078 * 108.52433 * 306.17246 * 14 13 12 16 16 C 1.34777 * 120.88364 * 231.19035 * 15 14 13 17 17 O 1.21278 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00161 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 18 16 21 21 C 1.34950 * 126.03255 * 124.71851 * 20 19 18 22 22 C 1.35328 * 107.74401 * 179.84052 * 21 20 19 23 23 C 1.39866 * 107.91614 * 0.42360 * 22 21 20 24 24 N 1.30843 * 108.20566 * 359.73540 * 23 22 21 25 25 C 1.47083 * 118.23625 * 51.45940 * 15 14 13 26 26 C 1.46901 * 111.00470 * 306.22790 * 12 11 10 27 27 C 1.47818 * 134.46062 * 359.86565 * 9 7 2 28 28 H 0.96998 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.09006 * 113.77059 * 41.05447 * 10 9 7 30 30 H 1.09003 * 113.77147 * 269.65622 * 10 9 7 31 31 H 1.08996 * 113.74684 * 269.15637 * 11 10 9 32 32 H 1.08999 * 109.48779 * 67.29537 * 13 12 11 33 33 H 1.08996 * 109.49158 * 307.21364 * 13 12 11 34 34 H 1.08999 * 109.63005 * 186.46445 * 14 13 12 35 35 H 1.09000 * 109.63170 * 65.88206 * 14 13 12 36 36 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 37 37 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 38 38 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 39 39 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 40 40 H 1.07997 * 126.13103 * 0.02562 * 21 20 19 41 41 H 1.07996 * 126.04194 * 180.16264 * 22 21 20 42 42 H 1.08000 * 125.89696 * 179.71754 * 23 22 21 43 43 H 1.08992 * 109.63310 * 68.25160 * 25 15 14 44 44 H 1.09000 * 109.62513 * 188.83510 * 25 15 14 45 45 H 1.09001 * 109.49172 * 292.71188 * 26 12 11 46 46 H 1.08998 * 109.48932 * 52.78719 * 26 12 11 47 47 H 1.08994 * 113.76909 * 90.37447 * 27 9 7 48 48 H 1.09003 * 113.82949 * 318.91758 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6410 12 7 -0.3352 -5.2645 0.0966 13 6 -1.6555 -5.4420 0.7159 14 6 -2.2552 -6.7760 0.2588 15 7 -2.2480 -6.8121 -1.2116 16 6 -3.3653 -7.1154 -1.9016 17 8 -4.3946 -7.3636 -1.3102 18 6 -3.3357 -7.1462 -3.4080 19 6 -4.7227 -7.5151 -3.9380 20 7 -4.6940 -7.5443 -5.4024 21 6 -5.0577 -8.5834 -6.1829 22 6 -4.8883 -8.2097 -7.4725 23 6 -4.3953 -6.9008 -7.4799 24 7 -4.2785 -6.5009 -6.2395 25 6 -0.9877 -6.5144 -1.9088 26 6 -0.4393 -5.1849 -1.3666 27 6 -0.1058 -2.7571 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 2.5624 -4.0324 0.6557 30 1 1.8318 -4.2351 -0.9970 31 1 0.3594 -4.0639 1.7307 32 1 -2.3116 -4.6257 0.4138 33 1 -1.5511 -5.4429 1.8008 34 1 -3.2794 -6.8607 0.6220 35 1 -1.6564 -7.5993 0.6481 36 1 -2.6103 -7.8880 -3.7420 37 1 -3.0513 -6.1642 -3.7859 38 1 -5.0067 -8.4972 -3.5600 39 1 -5.4484 -6.7734 -3.6039 40 1 -5.4218 -9.5406 -5.8400 41 1 -5.0931 -8.8164 -8.3420 42 1 -4.1527 -6.3205 -8.3578 43 1 -0.2693 -7.3129 -1.7238 44 1 -1.1735 -6.4260 -2.9792 45 1 -1.1124 -4.3721 -1.6396 46 1 0.5470 -4.9993 -1.7918 47 1 -0.5312 -2.8721 -0.9943 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941319440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:13 Heat of formation + Delta-G solvation = 127.114461 kcal Electronic energy + Delta-G solvation = -28629.711084 eV Core-core repulsion = 24724.206771 eV Total energy + Delta-G solvation = -3905.504313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37425 -40.40373 -38.99142 -36.71931 -34.59931 -33.83627 -31.99353 -31.32081 -30.60035 -29.75248 -28.07901 -26.40365 -24.98108 -24.73347 -23.68061 -22.64631 -21.44239 -21.29853 -20.66243 -19.35278 -18.41884 -17.79954 -16.93851 -16.67208 -16.33489 -16.02568 -15.39336 -15.11372 -15.02221 -14.82278 -14.66597 -14.35947 -14.12269 -13.78870 -13.69871 -13.31332 -13.04768 -12.91219 -12.63646 -12.31888 -12.26653 -12.06779 -11.88625 -11.73050 -11.62135 -11.22835 -11.04214 -10.86672 -10.84816 -10.75727 -10.56911 -10.20017 -10.00709 -9.91361 -9.67387 -9.53214 -8.87354 -8.84928 -8.77818 -7.87817 -6.89180 -5.79870 -3.12862 1.65315 2.18197 2.40786 2.62801 2.86051 3.36542 3.41720 3.44568 4.06198 4.15301 4.29688 4.45654 4.48716 4.59896 4.76973 4.87426 4.95901 5.00748 5.12943 5.17921 5.22007 5.29356 5.34637 5.38898 5.45771 5.47926 5.49930 5.55972 5.61929 5.67955 5.76478 5.80758 5.94727 6.06202 6.11451 6.28591 6.33740 6.41034 6.51325 6.59066 6.73993 6.95296 7.17153 7.22732 7.33155 7.47439 7.48889 7.57748 7.93588 7.94475 9.00789 9.67494 10.55498 11.36797 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002476 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.484955 B =11308.030247 C =12666.983830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.222 4.222 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.125 3.875 11 C 0.035 3.965 12 N -0.529 5.529 13 C 0.042 3.958 14 C 0.118 3.882 15 N -0.607 5.607 16 C 0.522 3.478 17 O -0.549 6.549 18 C -0.153 4.153 19 C 0.151 3.849 20 N -0.373 5.373 21 C 0.054 3.946 22 C -0.278 4.278 23 C 0.043 3.957 24 N -0.293 5.293 25 C 0.110 3.890 26 C 0.034 3.966 27 C 0.133 3.867 28 H 0.253 0.747 29 H 0.046 0.954 30 H 0.037 0.963 31 H 0.101 0.899 32 H 0.041 0.959 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.173 0.827 41 H 0.146 0.854 42 H 0.182 0.818 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.029 0.971 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.260 -20.658 -8.999 23.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.205 4.205 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.349 4.349 8 H 0.099 0.901 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.074 4.074 12 N -0.254 5.254 13 C -0.087 4.087 14 C -0.004 4.004 15 N -0.340 5.340 16 C 0.310 3.690 17 O -0.428 6.428 18 C -0.193 4.193 19 C 0.029 3.971 20 N -0.155 5.155 21 C -0.093 4.093 22 C -0.307 4.307 23 C -0.143 4.143 24 N -0.115 5.115 25 C -0.013 4.013 26 C -0.095 4.095 27 C 0.006 3.994 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.119 0.881 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.117 0.883 37 H 0.128 0.872 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.190 0.810 41 H 0.164 0.836 42 H 0.199 0.801 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.046 0.954 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.143 -19.890 -7.616 22.802 hybrid contribution -0.133 1.069 -0.948 1.435 sum -8.276 -18.821 -8.564 22.273 Atomic orbital electron populations 1.69832 1.05061 1.25236 1.56700 1.24801 0.95675 0.97601 1.02433 0.86045 0.78756 0.83676 0.77287 1.20403 1.21734 1.21680 1.19053 0.90281 0.81847 1.43767 0.90109 1.45834 1.02240 0.99435 1.86091 1.22694 0.94579 0.85876 0.97027 1.24299 0.96019 0.87645 0.99389 1.62035 1.18389 1.40747 1.04211 1.22397 0.90249 0.96135 0.99922 1.21765 1.02182 0.97876 0.78621 1.48182 1.10034 1.68297 1.07521 1.20292 0.83060 0.76425 0.89270 1.90699 1.30799 1.50085 1.71228 1.21906 0.98703 1.05864 0.92849 1.21425 0.97514 1.04866 0.73264 1.48812 1.50032 1.10216 1.06460 1.22607 1.00982 0.94113 0.91557 1.21526 1.14396 0.98026 0.96759 1.23933 0.99336 0.95594 0.95423 1.77408 1.21699 1.10984 1.01401 1.22089 0.84803 0.98055 0.96337 1.22687 1.02127 0.95385 0.89292 1.22920 0.88601 0.90568 0.97291 0.93710 0.93600 0.94528 0.88145 0.94056 0.89571 0.88901 0.90773 0.88334 0.87166 0.87779 0.88748 0.80998 0.83609 0.80059 0.90353 0.89649 0.93282 0.88756 0.95378 0.91267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.47 11.39 55.49 0.63 -26.84 16 2 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 7 C -0.22 -6.21 10.70 -15.06 -0.16 -6.37 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -15.47 3.70 -177.85 -0.66 -16.12 16 10 C 0.12 2.48 8.40 -2.97 -0.02 2.45 16 11 C 0.04 0.64 4.05 -69.91 -0.28 0.36 16 12 N -0.53 -7.80 4.77 -227.92 -1.09 -8.89 16 13 C 0.04 0.56 5.55 -3.70 -0.02 0.54 16 14 C 0.12 1.39 6.60 -3.60 -0.02 1.36 16 15 N -0.61 -7.07 3.00 -172.19 -0.52 -7.59 16 16 C 0.52 6.18 7.71 -10.98 -0.08 6.09 16 17 O -0.55 -7.98 15.43 5.56 0.09 -7.90 16 18 C -0.15 -1.42 4.25 -27.88 -0.12 -1.54 16 19 C 0.15 1.37 5.80 -4.04 -0.02 1.35 16 20 N -0.37 -3.71 3.68 -61.36 -0.23 -3.94 16 21 C 0.05 0.43 11.45 -17.22 -0.20 0.23 16 22 C -0.28 -2.24 10.80 -40.01 -0.43 -2.68 16 23 C 0.04 0.41 12.03 -17.36 -0.21 0.20 16 24 N -0.29 -3.48 12.42 30.62 0.38 -3.10 16 25 C 0.11 1.16 6.53 -3.36 -0.02 1.14 16 26 C 0.03 0.47 4.65 -3.46 -0.02 0.45 16 27 C 0.13 3.07 6.81 -2.83 -0.02 3.05 16 28 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 29 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.04 0.70 5.93 -51.93 -0.31 0.39 16 31 H 0.10 1.83 8.11 -51.93 -0.42 1.41 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.09 1.06 8.08 -51.93 -0.42 0.64 16 34 H 0.09 1.13 7.06 -51.93 -0.37 0.76 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.10 0.78 7.99 -51.93 -0.41 0.36 16 37 H 0.11 1.13 7.67 -51.93 -0.40 0.73 16 38 H 0.10 0.77 8.03 -51.93 -0.42 0.35 16 39 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 40 H 0.17 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.09 0.76 6.02 -51.93 -0.31 0.45 16 45 H 0.05 0.80 6.38 -51.93 -0.33 0.46 16 46 H 0.09 1.36 5.81 -51.93 -0.30 1.05 16 47 H 0.03 0.67 5.76 -51.93 -0.30 0.37 16 48 H 0.07 1.81 7.16 -51.93 -0.37 1.44 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -34.36 381.08 -9.69 -44.05 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.29 Total: 1.11 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.73 Total: 6.29 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -1.48 Total: -66.48 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: 0.09 Total: -7.90 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.36 -9.69 -44.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941319440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.162 kcal (2) G-P(sol) polarization free energy of solvation -34.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds