Wall clock time and date at job start Tue Mar 31 2020 18:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00136 * 2 1 4 4 H 1.48498 * 109.46991 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47023 * 299.99761 * 3 2 1 6 6 H 1.48496 * 109.47359 * 59.99871 * 3 2 1 7 7 C 1.38816 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00588 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99403 * 0.02562 * 7 2 1 10 10 C 1.47578 * 134.49038 * 179.97438 * 9 7 2 11 11 C 1.53945 * 86.11859 * 155.35653 * 10 9 7 12 12 N 1.46899 * 113.74003 * 137.95025 * 11 10 9 13 13 C 1.46910 * 110.99797 * 181.92590 * 12 11 10 14 14 C 1.53236 * 109.33889 * 187.25377 * 13 12 11 15 15 N 1.47078 * 108.52433 * 306.17246 * 14 13 12 16 16 C 1.34777 * 120.88364 * 231.19035 * 15 14 13 17 17 O 1.21278 * 119.99854 * 359.97438 * 16 15 14 18 18 C 1.50703 * 120.00161 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.46912 * 179.97438 * 18 16 15 20 20 N 1.46499 * 109.46840 * 179.97438 * 19 18 16 21 21 C 1.34950 * 126.03255 * 124.71851 * 20 19 18 22 22 C 1.35328 * 107.74401 * 179.84052 * 21 20 19 23 23 C 1.39866 * 107.91614 * 0.42360 * 22 21 20 24 24 N 1.30843 * 108.20566 * 359.73540 * 23 22 21 25 25 C 1.47083 * 118.23625 * 51.45940 * 15 14 13 26 26 C 1.46901 * 111.00470 * 306.22790 * 12 11 10 27 27 C 1.47818 * 134.46062 * 359.86565 * 9 7 2 28 28 H 0.96998 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.09006 * 113.77059 * 41.05447 * 10 9 7 30 30 H 1.09003 * 113.77147 * 269.65622 * 10 9 7 31 31 H 1.08996 * 113.74684 * 269.15637 * 11 10 9 32 32 H 1.08999 * 109.48779 * 67.29537 * 13 12 11 33 33 H 1.08996 * 109.49158 * 307.21364 * 13 12 11 34 34 H 1.08999 * 109.63005 * 186.46445 * 14 13 12 35 35 H 1.09000 * 109.63170 * 65.88206 * 14 13 12 36 36 H 1.09001 * 109.46980 * 59.99654 * 18 16 15 37 37 H 1.08992 * 109.47158 * 299.99760 * 18 16 15 38 38 H 1.09002 * 109.47398 * 300.00078 * 19 18 16 39 39 H 1.09001 * 109.47194 * 60.00258 * 19 18 16 40 40 H 1.07997 * 126.13103 * 0.02562 * 21 20 19 41 41 H 1.07996 * 126.04194 * 180.16264 * 22 21 20 42 42 H 1.08000 * 125.89696 * 179.71754 * 23 22 21 43 43 H 1.08992 * 109.63310 * 68.25160 * 25 15 14 44 44 H 1.09000 * 109.62513 * 188.83510 * 25 15 14 45 45 H 1.09001 * 109.49172 * 292.71188 * 26 12 11 46 46 H 1.08998 * 109.48932 * 52.78719 * 26 12 11 47 47 H 1.08994 * 113.76909 * 90.37447 * 27 9 7 48 48 H 1.09003 * 113.82949 * 318.91758 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 1.7201 -3.8101 0.0005 11 6 0.3470 -4.0829 0.6410 12 7 -0.3352 -5.2645 0.0966 13 6 -1.6555 -5.4420 0.7159 14 6 -2.2552 -6.7760 0.2588 15 7 -2.2480 -6.8121 -1.2116 16 6 -3.3653 -7.1154 -1.9016 17 8 -4.3946 -7.3636 -1.3102 18 6 -3.3357 -7.1462 -3.4080 19 6 -4.7227 -7.5151 -3.9380 20 7 -4.6940 -7.5443 -5.4024 21 6 -5.0577 -8.5834 -6.1829 22 6 -4.8883 -8.2097 -7.4725 23 6 -4.3953 -6.9008 -7.4799 24 7 -4.2785 -6.5009 -6.2395 25 6 -0.9877 -6.5144 -1.9088 26 6 -0.4393 -5.1849 -1.3666 27 6 -0.1058 -2.7571 0.0025 28 1 -0.4850 0.8400 -0.0004 29 1 2.5624 -4.0324 0.6557 30 1 1.8318 -4.2351 -0.9970 31 1 0.3594 -4.0639 1.7307 32 1 -2.3116 -4.6257 0.4138 33 1 -1.5511 -5.4429 1.8008 34 1 -3.2794 -6.8607 0.6220 35 1 -1.6564 -7.5993 0.6481 36 1 -2.6103 -7.8880 -3.7420 37 1 -3.0513 -6.1642 -3.7859 38 1 -5.0067 -8.4972 -3.5600 39 1 -5.4484 -6.7734 -3.6039 40 1 -5.4218 -9.5406 -5.8400 41 1 -5.0931 -8.8164 -8.3420 42 1 -4.1527 -6.3205 -8.3578 43 1 -0.2693 -7.3129 -1.7238 44 1 -1.1735 -6.4260 -2.9792 45 1 -1.1124 -4.3721 -1.6396 46 1 0.5470 -4.9993 -1.7918 47 1 -0.5312 -2.8721 -0.9943 48 1 -0.7188 -2.1399 0.6594 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941319440.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:12 Heat of formation + Delta-G solvation = 103.237330 kcal Electronic energy + Delta-G solvation = -28630.746474 eV Core-core repulsion = 24724.206771 eV Total energy + Delta-G solvation = -3906.539703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.04786 -41.46450 -40.36884 -38.02086 -35.37340 -35.20241 -33.83361 -32.38555 -31.35664 -30.50773 -29.69180 -27.82058 -26.67410 -25.69370 -24.77995 -24.29533 -22.53466 -21.94873 -21.45276 -20.64110 -19.61963 -18.76573 -18.67793 -17.67963 -17.20883 -17.00973 -16.94961 -16.65809 -16.20108 -15.87865 -15.72108 -15.59805 -15.21792 -14.96525 -14.66811 -14.26103 -14.05027 -13.86862 -13.70899 -13.57845 -13.46998 -13.42410 -13.25720 -13.06984 -12.85006 -12.70053 -12.46176 -12.24068 -12.21106 -12.08999 -11.86707 -11.76072 -11.52872 -11.39425 -10.98856 -10.88992 -10.38986 -9.84630 -9.49735 -9.29048 -8.88840 -7.93989 -5.28367 1.00889 1.42553 1.43551 1.45933 1.51361 1.54116 1.97877 2.00458 2.42338 2.82145 3.26079 3.37941 3.45777 3.53319 3.76430 3.81169 3.88179 3.97711 4.08598 4.13312 4.16786 4.23518 4.27914 4.35702 4.44525 4.45676 4.53518 4.65016 4.69053 4.69675 4.77951 4.85463 4.87498 4.92937 4.94227 4.97521 5.07374 5.19540 5.19929 5.35066 5.37979 5.46331 5.77880 5.87175 6.02054 6.09733 6.15143 6.31420 6.80824 6.87045 7.00074 7.56994 8.51801 9.22235 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013429 B = 0.002476 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.484955 B =11308.030247 C =12666.983830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.072 4.072 3 Si 0.980 3.020 4 H -0.261 1.261 5 H -0.294 1.294 6 H -0.292 1.292 7 C -0.230 4.230 8 H 0.087 0.913 9 N -0.641 5.641 10 C 0.128 3.872 11 C 0.065 3.935 12 N -0.514 5.514 13 C 0.043 3.957 14 C 0.125 3.875 15 N -0.611 5.611 16 C 0.522 3.478 17 O -0.578 6.578 18 C -0.140 4.140 19 C 0.153 3.847 20 N -0.382 5.382 21 C 0.055 3.945 22 C -0.285 4.285 23 C 0.035 3.965 24 N -0.343 5.343 25 C 0.120 3.880 26 C 0.033 3.967 27 C 0.134 3.866 28 H 0.246 0.754 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.104 0.896 32 H 0.014 0.986 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.075 0.925 40 H 0.207 0.793 41 H 0.169 0.831 42 H 0.200 0.800 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.019 0.981 46 H 0.093 0.907 47 H 0.017 0.983 48 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.224 -23.341 -9.724 26.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.264 4.264 3 Si 0.808 3.192 4 H -0.185 1.185 5 H -0.221 1.221 6 H -0.219 1.219 7 C -0.358 4.358 8 H 0.105 0.895 9 N -0.368 5.368 10 C 0.004 3.996 11 C -0.044 4.044 12 N -0.237 5.237 13 C -0.086 4.086 14 C 0.002 3.998 15 N -0.344 5.344 16 C 0.311 3.689 17 O -0.459 6.459 18 C -0.181 4.181 19 C 0.032 3.968 20 N -0.165 5.165 21 C -0.091 4.091 22 C -0.314 4.314 23 C -0.151 4.151 24 N -0.165 5.165 25 C -0.002 4.002 26 C -0.095 4.095 27 C 0.006 3.994 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.033 0.967 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.224 0.776 41 H 0.187 0.813 42 H 0.217 0.783 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.037 0.963 46 H 0.111 0.889 47 H 0.034 0.966 48 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -7.077 -22.618 -8.354 25.129 hybrid contribution -0.487 1.841 -0.765 2.052 sum -7.564 -20.777 -9.119 23.918 Atomic orbital electron populations 1.70042 1.06629 1.25413 1.58535 1.25676 0.96535 1.01092 1.03120 0.84987 0.78373 0.79243 0.76621 1.18533 1.22141 1.21938 1.19478 0.90919 0.83200 1.42218 0.89478 1.46234 1.03424 1.00949 1.86201 1.22847 0.95707 0.82787 0.98289 1.23847 0.94910 0.86457 0.99192 1.62102 1.18989 1.37821 1.04822 1.22462 0.88924 0.96443 1.00752 1.21703 1.02091 0.97085 0.78904 1.48292 1.10459 1.68014 1.07603 1.20665 0.82465 0.75622 0.90168 1.90687 1.31753 1.51448 1.71996 1.21809 0.99594 1.05899 0.90780 1.21398 0.96812 1.05368 0.73267 1.48871 1.50581 1.10498 1.06546 1.23251 0.99701 0.94727 0.91392 1.21885 1.14052 0.97672 0.97778 1.24412 0.98687 0.96576 0.95393 1.77353 1.23841 1.12691 1.02613 1.22113 0.84582 0.96463 0.97069 1.22708 1.01550 0.96656 0.88622 1.22820 0.87380 0.92846 0.96322 0.94481 0.92167 0.92713 0.87758 0.96747 0.88206 0.89345 0.88690 0.86163 0.88254 0.85789 0.90639 0.77619 0.81350 0.78308 0.88013 0.87745 0.96294 0.88918 0.96572 0.95364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.28 11.39 21.65 0.25 -59.03 16 2 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 3 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 7 C -0.23 -12.96 10.70 84.03 0.90 -12.06 16 8 H 0.09 4.66 7.83 -2.92 -0.02 4.64 16 9 N -0.64 -32.90 3.70 -716.59 -2.65 -35.55 16 10 C 0.13 4.96 8.40 86.49 0.73 5.68 16 11 C 0.07 2.35 4.05 46.67 0.19 2.54 16 12 N -0.51 -14.50 4.77 -875.01 -4.17 -18.67 16 13 C 0.04 1.12 5.55 86.38 0.48 1.60 16 14 C 0.12 2.72 6.60 86.35 0.57 3.29 16 15 N -0.61 -13.20 3.00 -817.06 -2.45 -15.65 16 16 C 0.52 11.73 7.71 87.66 0.68 12.41 16 17 O -0.58 -16.41 15.43 -3.02 -0.05 -16.46 16 18 C -0.14 -2.44 4.25 29.85 0.13 -2.31 16 19 C 0.15 2.63 5.80 86.38 0.50 3.13 16 20 N -0.38 -7.17 3.68 -348.05 -1.28 -8.45 16 21 C 0.05 0.75 11.45 83.54 0.96 1.70 16 22 C -0.28 -4.02 10.80 21.99 0.24 -3.78 16 23 C 0.03 0.63 12.03 85.23 1.02 1.65 16 24 N -0.34 -8.02 12.42 -57.02 -0.71 -8.72 16 25 C 0.12 2.25 6.53 86.50 0.57 2.82 16 26 C 0.03 0.89 4.65 86.54 0.40 1.30 16 27 C 0.13 6.39 6.81 86.45 0.59 6.98 16 28 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 29 H 0.06 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.06 1.96 5.93 -2.39 -0.01 1.95 16 31 H 0.10 3.72 8.11 -2.39 -0.02 3.70 16 32 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 2.34 8.08 -2.39 -0.02 2.32 16 34 H 0.09 2.06 7.06 -2.39 -0.02 2.05 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.12 1.57 7.99 -2.39 -0.02 1.55 16 37 H 0.10 1.99 7.67 -2.39 -0.02 1.98 16 38 H 0.12 1.60 8.03 -2.39 -0.02 1.58 16 39 H 0.08 1.56 8.10 -2.39 -0.02 1.55 16 40 H 0.21 1.14 8.06 -2.91 -0.02 1.12 16 41 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 42 H 0.20 2.48 8.06 -2.91 -0.02 2.46 16 43 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.10 1.60 6.02 -2.39 -0.01 1.59 16 45 H 0.02 0.63 6.38 -2.39 -0.02 0.61 16 46 H 0.09 2.53 5.81 -2.39 -0.01 2.52 16 47 H 0.02 0.83 5.76 -2.39 -0.01 0.81 16 48 H 0.03 1.56 7.16 -2.39 -0.02 1.54 16 Total: -1.00 -77.03 381.08 0.33 -76.70 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.96 Total: 16.19 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 8.41 Total: 21.26 kcal Atomic # 7 Polarization: -135.06 SS G_CDS: -11.02 Total: -146.08 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.05 Total: -16.46 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -77.03 0.33 -76.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941319440.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.942 kcal (2) G-P(sol) polarization free energy of solvation -77.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds