Wall clock time and date at job start Tue Mar 31 2020 18:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00309 * 2 1 4 4 H 1.48506 * 109.47142 * 274.98539 * 3 2 1 5 5 H 1.48497 * 109.47249 * 34.98278 * 3 2 1 6 6 H 1.48499 * 109.47365 * 154.98412 * 3 2 1 7 7 C 1.38812 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99914 * 185.06368 * 7 2 1 9 9 N 1.36939 * 120.00121 * 5.06345 * 7 2 1 10 10 C 1.47585 * 134.49123 * 173.47720 * 9 7 2 11 11 C 1.53950 * 86.11303 * 155.36173 * 10 9 7 12 12 N 1.46896 * 113.73818 * 137.95370 * 11 10 9 13 13 C 1.46894 * 111.00142 * 181.92271 * 12 11 10 14 14 C 1.53239 * 109.34608 * 187.25533 * 13 12 11 15 15 N 1.47088 * 108.51683 * 306.16959 * 14 13 12 16 16 C 1.34772 * 120.88014 * 231.17985 * 15 14 13 17 17 O 1.21277 * 120.00223 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99770 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.47350 * 179.97438 * 19 18 16 21 21 C 1.34669 * 126.58847 * 275.16500 * 20 19 18 22 22 N 1.34134 * 108.01609 * 180.27886 * 21 20 19 23 23 C 1.30504 * 109.25844 * 359.72896 * 22 21 20 24 24 N 1.35051 * 108.69759 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.39236 * 179.97438 * 24 23 22 26 26 C 1.47086 * 118.23441 * 51.45886 * 15 14 13 27 27 C 1.46895 * 111.00403 * 306.22593 * 12 11 10 28 28 C 1.47809 * 134.45754 * 353.35049 * 9 7 2 29 29 H 0.96996 * 119.99412 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76581 * 41.06302 * 10 9 7 31 31 H 1.08996 * 113.76768 * 269.66259 * 10 9 7 32 32 H 1.09000 * 113.74057 * 269.15292 * 11 10 9 33 33 H 1.09001 * 109.49335 * 67.29203 * 13 12 11 34 34 H 1.09003 * 109.49710 * 307.21910 * 13 12 11 35 35 H 1.08993 * 109.63390 * 186.46442 * 14 13 12 36 36 H 1.08994 * 109.62622 * 65.87812 * 14 13 12 37 37 H 1.08990 * 109.47085 * 60.00307 * 18 16 15 38 38 H 1.09002 * 109.46675 * 300.00118 * 18 16 15 39 39 H 1.08996 * 109.48045 * 59.99707 * 19 18 16 40 40 H 1.09006 * 109.47321 * 299.99376 * 19 18 16 41 41 H 1.07994 * 125.99073 * 359.97390 * 21 20 19 42 42 H 1.07998 * 125.64961 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.62588 * 68.25194 * 26 15 14 44 44 H 1.09001 * 109.62622 * 188.82521 * 26 15 14 45 45 H 1.08998 * 109.49367 * 292.71159 * 27 12 11 46 46 H 1.09006 * 109.49327 * 52.78722 * 27 12 11 47 47 H 1.09002 * 113.77033 * 90.37702 * 28 9 7 48 48 H 1.08994 * 113.83572 * 318.91745 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0831 9 7 1.3295 -2.3858 -0.1036 10 6 1.7285 -3.7986 -0.2550 11 6 0.3708 -4.1416 0.3845 12 7 -0.3195 -5.2663 -0.2608 13 6 -1.6250 -5.5123 0.3660 14 6 -2.2305 -6.7969 -0.2095 15 7 -2.2558 -6.6853 -1.6759 16 6 -3.3871 -6.9240 -2.3684 17 8 -4.4024 -7.2352 -1.7826 18 6 -3.3904 -6.8044 -3.8707 19 6 -4.7880 -7.1244 -4.4046 20 6 -4.7915 -7.0042 -5.9069 21 6 -4.9692 -5.8766 -6.6215 22 7 -4.9089 -6.1964 -7.9228 23 6 -4.6949 -7.4782 -8.0416 24 7 -4.6120 -8.0196 -6.8071 25 1 -4.4581 -8.9541 -6.5977 26 6 -1.0121 -6.3122 -2.3669 27 6 -0.4562 -5.0410 -1.7059 28 6 -0.1002 -2.7610 -0.1071 29 1 -0.4849 0.8401 -0.0004 30 1 2.5858 -4.0808 0.3561 31 1 1.8195 -4.1207 -1.2923 32 1 0.4074 -4.2319 1.4701 33 1 -2.2904 -4.6733 0.1618 34 1 -1.4968 -5.6213 1.4430 35 1 -3.2461 -6.9232 0.1656 36 1 -1.6205 -7.6518 0.0822 37 1 -2.6705 -7.5056 -4.2926 38 1 -3.1172 -5.7881 -4.1547 39 1 -5.5077 -6.4230 -3.9827 40 1 -5.0616 -8.1406 -4.1206 41 1 -5.1364 -4.8891 -6.2177 42 1 -4.6005 -8.0170 -8.9728 43 1 -0.2873 -7.1216 -2.2786 44 1 -1.2218 -6.1180 -3.4188 45 1 -1.1377 -4.2086 -1.8813 46 1 0.5199 -4.8083 -2.1317 47 1 -0.5476 -2.7776 -1.1009 48 1 -0.7003 -2.2163 0.6217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941433230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:28 Heat of formation + Delta-G solvation = 97.492539 kcal Electronic energy + Delta-G solvation = -28598.690170 eV Core-core repulsion = 24691.901354 eV Total energy + Delta-G solvation = -3906.788816 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.31346 -40.37676 -38.96658 -36.68176 -34.30294 -33.77878 -32.61446 -31.93157 -31.14002 -29.21896 -28.00029 -26.36767 -24.96799 -24.66966 -23.64501 -22.61280 -21.83929 -21.29682 -20.87439 -19.33870 -18.45041 -18.15468 -17.09523 -16.79449 -16.14306 -15.99086 -15.40363 -15.13197 -15.05054 -14.83547 -14.78957 -14.35089 -14.08253 -13.80677 -13.70686 -13.64296 -13.09068 -12.86542 -12.54269 -12.28790 -12.24744 -12.04745 -11.87842 -11.64129 -11.52340 -11.22504 -11.02425 -10.85962 -10.74820 -10.57381 -10.30144 -10.24541 -10.20728 -9.93157 -9.90183 -9.52227 -8.83921 -8.75293 -8.64952 -7.87016 -6.88411 -5.81577 -3.13569 1.71457 2.49519 2.74777 2.87668 2.96196 3.36762 3.41834 3.44170 4.06845 4.19653 4.45621 4.46524 4.63712 4.67560 4.75025 4.92282 4.99549 5.10275 5.14346 5.18982 5.22047 5.29788 5.31790 5.35979 5.43851 5.46376 5.53740 5.62985 5.69242 5.73244 5.81556 5.95648 6.00102 6.06594 6.12573 6.28944 6.37693 6.46543 6.52402 6.59437 6.96148 7.05193 7.15613 7.28813 7.34054 7.48963 7.57972 7.78245 7.93728 8.03310 9.00234 9.66894 10.55807 11.35644 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002486 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.960831 B =11260.531070 C =12675.241287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.224 4.224 8 H 0.081 0.919 9 N -0.609 5.609 10 C 0.124 3.876 11 C 0.034 3.966 12 N -0.529 5.529 13 C 0.042 3.958 14 C 0.118 3.882 15 N -0.610 5.610 16 C 0.516 3.484 17 O -0.548 6.548 18 C -0.135 4.135 19 C -0.027 4.027 20 C -0.022 4.022 21 C -0.021 4.021 22 N -0.494 5.494 23 C 0.180 3.820 24 N -0.568 5.568 25 H 0.418 0.582 26 C 0.111 3.889 27 C 0.033 3.967 28 C 0.136 3.864 29 H 0.254 0.746 30 H 0.045 0.955 31 H 0.037 0.963 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.170 0.830 42 H 0.207 0.793 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.049 0.951 46 H 0.094 0.906 47 H 0.031 0.969 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 -20.408 -9.589 23.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.351 4.351 8 H 0.099 0.901 9 N -0.336 5.336 10 C -0.002 4.002 11 C -0.074 4.074 12 N -0.254 5.254 13 C -0.087 4.087 14 C -0.005 4.005 15 N -0.344 5.344 16 C 0.304 3.696 17 O -0.426 6.426 18 C -0.176 4.176 19 C -0.066 4.066 20 C -0.137 4.137 21 C -0.169 4.169 22 N -0.212 5.212 23 C -0.104 4.104 24 N -0.172 5.172 25 H 0.256 0.744 26 C -0.012 4.012 27 C -0.095 4.095 28 C 0.009 3.991 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.119 0.881 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.188 0.812 42 H 0.223 0.777 43 H 0.095 0.905 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.112 0.888 47 H 0.048 0.952 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.692 -20.029 -9.835 23.602 hybrid contribution 0.328 0.774 0.409 0.935 sum -7.364 -19.255 -9.425 22.667 Atomic orbital electron populations 1.69841 1.05095 1.25397 1.56258 1.24830 0.95672 0.97595 1.02263 0.86129 0.78760 0.83539 0.77544 1.21589 1.21690 1.20502 1.19009 0.90739 0.81941 1.43456 0.90139 1.45808 1.02222 1.00783 1.84777 1.22699 0.94627 0.85792 0.97095 1.24310 0.96029 0.88446 0.98647 1.62020 1.18891 1.42005 1.02472 1.22392 0.90410 0.96496 0.99376 1.21738 1.02023 0.97932 0.78792 1.48222 1.10187 1.68251 1.07711 1.20584 0.82703 0.76509 0.89799 1.90687 1.32207 1.48330 1.71390 1.21697 0.98925 1.04805 0.92143 1.19753 0.96697 1.04173 0.85997 1.21311 1.10452 0.88966 0.92995 1.22192 1.07400 0.98446 0.88820 1.70307 1.18850 1.12106 1.19981 1.24988 1.05464 0.90923 0.89005 1.43322 1.55555 1.10984 1.07309 0.74399 1.22059 0.85319 0.97733 0.96080 1.22688 1.01981 0.95540 0.89308 1.22850 0.88499 0.89596 0.98109 0.93640 0.93659 0.94531 0.88195 0.94067 0.89670 0.88978 0.90951 0.89110 0.88086 0.88503 0.90426 0.81245 0.77661 0.90544 0.89664 0.93276 0.88818 0.95182 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.23 11.51 55.49 0.64 -26.59 16 2 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 3 Si 0.91 22.05 29.56 -169.99 -5.02 17.03 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.22 -6.23 10.70 -15.06 -0.16 -6.39 16 8 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 9 N -0.61 -15.34 3.70 -177.87 -0.66 -16.00 16 10 C 0.12 2.45 8.41 -2.96 -0.02 2.42 16 11 C 0.03 0.62 4.05 -69.92 -0.28 0.33 16 12 N -0.53 -7.69 4.77 -227.95 -1.09 -8.78 16 13 C 0.04 0.56 5.55 -3.70 -0.02 0.54 16 14 C 0.12 1.38 6.60 -3.60 -0.02 1.35 16 15 N -0.61 -6.95 3.00 -172.18 -0.52 -7.46 16 16 C 0.52 5.97 7.71 -10.99 -0.08 5.89 16 17 O -0.55 -8.06 15.43 5.56 0.09 -7.97 16 18 C -0.14 -1.12 4.05 -27.88 -0.11 -1.23 16 19 C -0.03 -0.22 5.06 -27.88 -0.14 -0.36 16 20 C -0.02 -0.18 6.49 -81.60 -0.53 -0.71 16 21 C -0.02 -0.22 11.79 -17.81 -0.21 -0.43 16 22 N -0.49 -5.60 11.25 -14.66 -0.16 -5.77 16 23 C 0.18 1.37 13.04 -90.36 -1.18 0.19 16 24 N -0.57 -3.62 6.15 -10.29 -0.06 -3.69 16 25 H 0.42 1.33 8.96 -40.82 -0.37 0.97 16 26 C 0.11 1.13 6.53 -3.36 -0.02 1.11 16 27 C 0.03 0.45 4.65 -3.47 -0.02 0.44 16 28 C 0.14 3.11 6.72 -2.84 -0.02 3.09 16 29 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.69 5.93 -51.93 -0.31 0.38 16 32 H 0.10 1.80 8.11 -51.93 -0.42 1.38 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 35 H 0.09 1.13 7.06 -51.93 -0.37 0.76 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.60 7.99 -51.93 -0.41 0.19 16 38 H 0.10 0.82 7.67 -51.93 -0.40 0.42 16 39 H 0.10 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 41 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 42 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 43 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.09 0.69 6.02 -51.93 -0.31 0.38 16 45 H 0.05 0.77 6.38 -51.93 -0.33 0.44 16 46 H 0.09 1.32 5.81 -51.93 -0.30 1.02 16 47 H 0.03 0.71 5.76 -51.93 -0.30 0.41 16 48 H 0.06 1.67 7.36 -51.93 -0.38 1.29 16 LS Contribution 379.71 15.07 5.72 5.72 Total: -1.00 -35.35 379.71 -11.24 -46.59 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -7.25 Total: 0.96 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -2.92 Total: 5.95 kcal Atomic # 7 Polarization: -66.43 SS G_CDS: -1.85 Total: -68.28 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: 0.09 Total: -7.97 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.35 -11.24 -46.59 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941433230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.084 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds