Wall clock time and date at job start Tue Mar 31 2020 18:11:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00309 * 2 1 4 4 H 1.48506 * 109.47142 * 274.98539 * 3 2 1 5 5 H 1.48497 * 109.47249 * 34.98278 * 3 2 1 6 6 H 1.48499 * 109.47365 * 154.98412 * 3 2 1 7 7 C 1.38812 * 119.99651 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99914 * 185.06368 * 7 2 1 9 9 N 1.36939 * 120.00121 * 5.06345 * 7 2 1 10 10 C 1.47585 * 134.49123 * 173.47720 * 9 7 2 11 11 C 1.53950 * 86.11303 * 155.36173 * 10 9 7 12 12 N 1.46896 * 113.73818 * 137.95370 * 11 10 9 13 13 C 1.46894 * 111.00142 * 181.92271 * 12 11 10 14 14 C 1.53239 * 109.34608 * 187.25533 * 13 12 11 15 15 N 1.47088 * 108.51683 * 306.16959 * 14 13 12 16 16 C 1.34772 * 120.88014 * 231.17985 * 15 14 13 17 17 O 1.21277 * 120.00223 * 0.02562 * 16 15 14 18 18 C 1.50704 * 119.99770 * 180.02562 * 16 15 14 19 19 C 1.52994 * 109.46971 * 180.02562 * 18 16 15 20 20 C 1.50705 * 109.47350 * 179.97438 * 19 18 16 21 21 C 1.34669 * 126.58847 * 275.16500 * 20 19 18 22 22 N 1.34134 * 108.01609 * 180.27886 * 21 20 19 23 23 C 1.30504 * 109.25844 * 359.72896 * 22 21 20 24 24 N 1.35051 * 108.69759 * 0.02562 * 23 22 21 25 25 H 0.96997 * 126.39236 * 179.97438 * 24 23 22 26 26 C 1.47086 * 118.23441 * 51.45886 * 15 14 13 27 27 C 1.46895 * 111.00403 * 306.22593 * 12 11 10 28 28 C 1.47809 * 134.45754 * 353.35049 * 9 7 2 29 29 H 0.96996 * 119.99412 * 0.02562 * 1 2 3 30 30 H 1.08999 * 113.76581 * 41.06302 * 10 9 7 31 31 H 1.08996 * 113.76768 * 269.66259 * 10 9 7 32 32 H 1.09000 * 113.74057 * 269.15292 * 11 10 9 33 33 H 1.09001 * 109.49335 * 67.29203 * 13 12 11 34 34 H 1.09003 * 109.49710 * 307.21910 * 13 12 11 35 35 H 1.08993 * 109.63390 * 186.46442 * 14 13 12 36 36 H 1.08994 * 109.62622 * 65.87812 * 14 13 12 37 37 H 1.08990 * 109.47085 * 60.00307 * 18 16 15 38 38 H 1.09002 * 109.46675 * 300.00118 * 18 16 15 39 39 H 1.08996 * 109.48045 * 59.99707 * 19 18 16 40 40 H 1.09006 * 109.47321 * 299.99376 * 19 18 16 41 41 H 1.07994 * 125.99073 * 359.97390 * 21 20 19 42 42 H 1.07998 * 125.64961 * 179.97438 * 23 22 21 43 43 H 1.09001 * 109.62588 * 68.25194 * 26 15 14 44 44 H 1.09001 * 109.62622 * 188.82521 * 26 15 14 45 45 H 1.08998 * 109.49367 * 292.71159 * 27 12 11 46 46 H 1.09006 * 109.49327 * 52.78722 * 27 12 11 47 47 H 1.09002 * 113.77033 * 90.37702 * 28 9 7 48 48 H 1.08994 * 113.83572 * 318.91745 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3925 2.1072 -1.3948 5 1 1.5044 2.6199 0.8027 6 1 3.5965 1.4119 0.5920 7 6 2.0102 -1.2022 0.0005 8 1 3.0871 -1.2040 0.0831 9 7 1.3295 -2.3858 -0.1036 10 6 1.7285 -3.7986 -0.2550 11 6 0.3708 -4.1416 0.3845 12 7 -0.3195 -5.2663 -0.2608 13 6 -1.6250 -5.5123 0.3660 14 6 -2.2305 -6.7969 -0.2095 15 7 -2.2558 -6.6853 -1.6759 16 6 -3.3871 -6.9240 -2.3684 17 8 -4.4024 -7.2352 -1.7826 18 6 -3.3904 -6.8044 -3.8707 19 6 -4.7880 -7.1244 -4.4046 20 6 -4.7915 -7.0042 -5.9069 21 6 -4.9692 -5.8766 -6.6215 22 7 -4.9089 -6.1964 -7.9228 23 6 -4.6949 -7.4782 -8.0416 24 7 -4.6120 -8.0196 -6.8071 25 1 -4.4581 -8.9541 -6.5977 26 6 -1.0121 -6.3122 -2.3669 27 6 -0.4562 -5.0410 -1.7059 28 6 -0.1002 -2.7610 -0.1071 29 1 -0.4849 0.8401 -0.0004 30 1 2.5858 -4.0808 0.3561 31 1 1.8195 -4.1207 -1.2923 32 1 0.4074 -4.2319 1.4701 33 1 -2.2904 -4.6733 0.1618 34 1 -1.4968 -5.6213 1.4430 35 1 -3.2461 -6.9232 0.1656 36 1 -1.6205 -7.6518 0.0822 37 1 -2.6705 -7.5056 -4.2926 38 1 -3.1172 -5.7881 -4.1547 39 1 -5.5077 -6.4230 -3.9827 40 1 -5.0616 -8.1406 -4.1206 41 1 -5.1364 -4.8891 -6.2177 42 1 -4.6005 -8.0170 -8.9728 43 1 -0.2873 -7.1216 -2.2786 44 1 -1.2218 -6.1180 -3.4188 45 1 -1.1377 -4.2086 -1.8813 46 1 0.5199 -4.8083 -2.1317 47 1 -0.5476 -2.7776 -1.1009 48 1 -0.7003 -2.2163 0.6217 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941433230.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:27 Heat of formation + Delta-G solvation = 72.913329 kcal Electronic energy + Delta-G solvation = -28599.756004 eV Core-core repulsion = 24691.901354 eV Total energy + Delta-G solvation = -3907.854651 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.93969 -41.43559 -40.31866 -37.96240 -35.22299 -34.97203 -33.79935 -33.23264 -32.17780 -30.11171 -29.48843 -27.73812 -26.65808 -25.59479 -24.72053 -24.23509 -22.51877 -22.31645 -21.60187 -20.62522 -19.56274 -18.91385 -18.73024 -17.99023 -17.16795 -16.95898 -16.82845 -16.61178 -16.16334 -15.83050 -15.70552 -15.59729 -15.34756 -14.89910 -14.66761 -14.35428 -14.19274 -13.91486 -13.69923 -13.59732 -13.43252 -13.41339 -13.19776 -13.01013 -12.81207 -12.66576 -12.26394 -12.21391 -12.13980 -12.06683 -11.85268 -11.75285 -11.35246 -10.96765 -10.93121 -10.87053 -10.82387 -9.77879 -9.31572 -9.25005 -8.86374 -7.94120 -5.27281 1.09625 1.43496 1.45192 1.54288 1.59821 1.96322 2.23093 2.32221 2.43751 2.85473 3.25838 3.43306 3.48087 3.83477 3.86009 3.91591 3.99453 4.00111 4.07541 4.13265 4.25318 4.28072 4.37976 4.47077 4.48694 4.52110 4.59870 4.65555 4.70205 4.74157 4.80074 4.82173 4.90869 4.95742 5.00453 5.07605 5.11184 5.20397 5.35216 5.37998 5.44532 5.48706 5.78997 5.88283 6.05537 6.13010 6.41655 6.60635 6.88216 7.12907 7.16236 7.58069 8.53744 9.22657 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.012853 B = 0.002486 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.960831 B =11260.531070 C =12675.241287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.069 4.069 3 Si 0.977 3.023 4 H -0.288 1.288 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.232 4.232 8 H 0.087 0.913 9 N -0.641 5.641 10 C 0.128 3.872 11 C 0.064 3.936 12 N -0.515 5.515 13 C 0.044 3.956 14 C 0.124 3.876 15 N -0.614 5.614 16 C 0.513 3.487 17 O -0.583 6.583 18 C -0.127 4.127 19 C -0.019 4.019 20 C -0.015 4.015 21 C -0.051 4.051 22 N -0.543 5.543 23 C 0.190 3.810 24 N -0.555 5.555 25 H 0.436 0.564 26 C 0.120 3.880 27 C 0.032 3.968 28 C 0.137 3.863 29 H 0.247 0.753 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.015 0.985 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.164 0.836 42 H 0.244 0.756 43 H 0.098 0.902 44 H 0.110 0.890 45 H 0.021 0.979 46 H 0.092 0.908 47 H 0.020 0.980 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -23.076 -10.658 26.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.262 4.262 3 Si 0.805 3.195 4 H -0.215 1.215 5 H -0.223 1.223 6 H -0.188 1.188 7 C -0.360 4.360 8 H 0.105 0.895 9 N -0.368 5.368 10 C 0.004 3.996 11 C -0.045 4.045 12 N -0.238 5.238 13 C -0.085 4.085 14 C 0.001 3.999 15 N -0.347 5.347 16 C 0.303 3.697 17 O -0.464 6.464 18 C -0.167 4.167 19 C -0.058 4.058 20 C -0.132 4.132 21 C -0.198 4.198 22 N -0.262 5.262 23 C -0.094 4.094 24 N -0.160 5.160 25 H 0.277 0.723 26 C -0.002 4.002 27 C -0.097 4.097 28 C 0.010 3.990 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.033 0.967 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.109 0.891 37 H 0.136 0.864 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.182 0.818 42 H 0.260 0.740 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.039 0.961 46 H 0.110 0.890 47 H 0.037 0.963 48 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.170 -22.761 -10.904 25.982 hybrid contribution -0.151 1.534 0.721 1.701 sum -6.321 -21.228 -10.183 24.377 Atomic orbital electron populations 1.70042 1.06620 1.25526 1.58168 1.25679 0.96514 1.01031 1.02984 0.85073 0.78011 0.79129 0.77252 1.21505 1.22319 1.18814 1.19430 0.91326 0.83295 1.41967 0.89537 1.46200 1.03441 1.02177 1.85010 1.22848 0.95747 0.82642 0.98402 1.23858 0.94896 0.86946 0.98803 1.62087 1.19415 1.39268 1.03057 1.22442 0.89160 0.96584 1.00305 1.21651 1.01763 0.97256 0.79203 1.48341 1.10714 1.67956 1.07665 1.21120 0.81994 0.75531 0.91023 1.90676 1.33365 1.49970 1.72349 1.21683 0.99626 1.05709 0.89637 1.19629 0.96408 1.04051 0.85705 1.21176 1.09972 0.88951 0.93061 1.22306 1.09033 0.99197 0.89279 1.70263 1.21045 1.14392 1.20541 1.25694 1.03151 0.90155 0.90407 1.43266 1.54598 1.11546 1.06571 0.72322 1.22115 0.84993 0.96324 0.96761 1.22729 1.01454 0.96750 0.88723 1.22755 0.87277 0.92302 0.96647 0.94435 0.92288 0.92675 0.87864 0.96673 0.88465 0.89661 0.89056 0.86388 0.87802 0.90026 0.89845 0.81824 0.74004 0.88344 0.87147 0.96097 0.88985 0.96285 0.95844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 11.51 21.65 0.25 -58.39 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 3 Si 0.98 46.00 29.56 68.60 2.03 48.03 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 6 H -0.26 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.23 -12.98 10.70 84.03 0.90 -12.08 16 8 H 0.09 4.60 7.83 -2.91 -0.02 4.58 16 9 N -0.64 -32.56 3.70 -716.67 -2.65 -35.21 16 10 C 0.13 4.89 8.41 86.49 0.73 5.61 16 11 C 0.06 2.28 4.05 46.67 0.19 2.47 16 12 N -0.51 -14.22 4.77 -875.10 -4.17 -18.39 16 13 C 0.04 1.13 5.55 86.38 0.48 1.61 16 14 C 0.12 2.69 6.60 86.35 0.57 3.26 16 15 N -0.61 -12.73 3.00 -817.04 -2.45 -15.18 16 16 C 0.51 11.08 7.71 87.66 0.68 11.75 16 17 O -0.58 -16.76 15.43 -3.02 -0.05 -16.80 16 18 C -0.13 -1.81 4.05 29.85 0.12 -1.69 16 19 C -0.02 -0.28 5.06 29.85 0.15 -0.13 16 20 C -0.01 -0.23 6.49 40.95 0.27 0.03 16 21 C -0.05 -1.07 11.79 83.52 0.98 -0.08 16 22 N -0.54 -11.96 11.25 -200.30 -2.25 -14.22 16 23 C 0.19 2.47 13.04 180.26 2.35 4.82 16 24 N -0.55 -5.67 6.15 -186.48 -1.15 -6.82 16 25 H 0.44 1.33 8.96 -92.71 -0.83 0.50 16 26 C 0.12 2.08 6.53 86.50 0.57 2.65 16 27 C 0.03 0.82 4.65 86.54 0.40 1.23 16 28 C 0.14 6.48 6.72 86.44 0.58 7.06 16 29 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.94 5.93 -2.39 -0.01 1.93 16 32 H 0.10 3.63 8.11 -2.39 -0.02 3.61 16 33 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.10 2.27 8.09 -2.39 -0.02 2.25 16 35 H 0.09 2.02 7.06 -2.39 -0.02 2.00 16 36 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.12 1.09 7.99 -2.39 -0.02 1.07 16 38 H 0.10 1.49 7.67 -2.39 -0.02 1.48 16 39 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.08 1.17 8.10 -2.38 -0.02 1.15 16 41 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 42 H 0.24 0.95 8.06 -2.91 -0.02 0.92 16 43 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 44 H 0.11 1.40 6.02 -2.39 -0.01 1.38 16 45 H 0.02 0.67 6.38 -2.39 -0.02 0.65 16 46 H 0.09 2.42 5.81 -2.38 -0.01 2.40 16 47 H 0.02 0.95 5.76 -2.39 -0.01 0.94 16 48 H 0.02 1.27 7.36 -2.39 -0.02 1.26 16 Total: -1.00 -79.61 379.71 -0.87 -80.48 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.15 Total: 13.51 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 9.43 Total: 22.99 kcal Atomic # 7 Polarization: -135.78 SS G_CDS: -12.43 Total: -148.21 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.05 Total: -16.80 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -79.61 -0.87 -80.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941433230.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.394 kcal (2) G-P(sol) polarization free energy of solvation -79.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds