Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47021 * 125.64962 * 359.41735 * 9 7 2 11 11 C 1.54339 * 107.26633 * 178.85047 * 10 9 7 12 12 C 1.55158 * 103.02072 * 338.13723 * 11 10 9 13 13 H 1.08998 * 111.00478 * 277.23662 * 12 11 10 14 14 C 1.52995 * 111.00553 * 153.38102 * 12 11 10 15 15 H 1.09002 * 109.49699 * 306.28608 * 14 12 11 16 16 C 1.53039 * 109.49831 * 66.35054 * 14 12 11 17 17 C 1.53033 * 109.53916 * 181.31265 * 16 14 12 18 18 C 1.53185 * 109.31990 * 298.63924 * 17 16 14 19 19 N 1.46923 * 108.77657 * 54.63012 * 18 17 16 20 20 C 1.34779 * 120.63326 * 126.41528 * 19 18 17 21 21 O 1.21282 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.50700 * 119.99465 * 0.02562 * 20 19 18 23 23 N 1.46502 * 109.46571 * 179.97438 * 22 20 19 24 24 N 1.28605 * 124.61878 * 269.69611 * 23 22 20 25 25 C 1.31385 * 108.71777 * 179.83609 * 24 23 22 26 26 C 1.39678 * 105.89901 * 0.40996 * 25 24 23 27 27 N 1.28605 * 124.61882 * 90.00549 * 23 22 20 28 28 C 1.46927 * 118.74029 * 306.39970 * 19 18 17 29 29 C 1.47426 * 125.64564 * 179.72206 * 9 7 2 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88280 * 298.39284 * 10 9 7 32 32 H 1.09001 * 109.88287 * 59.55950 * 10 9 7 33 33 H 1.09000 * 110.85247 * 219.67418 * 11 10 9 34 34 H 1.08994 * 110.67130 * 96.51663 * 11 10 9 35 35 H 1.09003 * 109.46138 * 301.33979 * 16 14 12 36 36 H 1.09006 * 109.45532 * 61.31095 * 16 14 12 37 37 H 1.09003 * 109.49682 * 58.59071 * 17 16 14 38 38 H 1.09004 * 109.50232 * 178.68392 * 17 16 14 39 39 H 1.08995 * 109.59453 * 174.42141 * 18 17 16 40 40 H 1.09001 * 109.58716 * 294.70378 * 18 17 16 41 41 H 1.08999 * 109.47118 * 299.99285 * 22 20 19 42 42 H 1.09002 * 109.47281 * 60.00257 * 22 20 19 43 43 H 1.07997 * 127.04572 * 180.16598 * 25 24 23 44 44 H 1.07999 * 127.05002 * 179.76526 * 26 25 24 45 45 H 1.09008 * 109.58588 * 293.81943 * 28 19 18 46 46 H 1.08998 * 109.59152 * 173.39626 * 28 19 18 47 47 H 1.09003 * 110.37118 * 322.92744 * 29 9 7 48 48 H 1.08998 * 110.36604 * 85.14784 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1376 -2.5327 -0.0011 11 6 -0.4486 -4.0439 -0.0412 12 6 0.8513 -4.6528 -0.6300 13 1 0.8556 -4.5872 -1.7180 14 6 1.0366 -6.1000 -0.1693 15 1 0.9865 -6.1447 0.9187 16 6 -0.0693 -6.9722 -0.7678 17 6 0.0960 -8.4137 -0.2814 18 6 1.4485 -8.9560 -0.7539 19 7 2.5076 -8.0423 -0.3044 20 6 3.5582 -8.5036 0.4026 21 8 4.4258 -7.7391 0.7683 22 6 3.6549 -9.9695 0.7387 23 7 4.8786 -10.2148 1.5058 24 7 6.0175 -10.5140 0.9887 25 6 6.8940 -10.6620 1.9562 26 6 6.1947 -10.4357 3.1440 27 7 4.9590 -10.1659 2.7884 28 6 2.3998 -6.6161 -0.6406 29 6 1.9333 -3.7311 -0.0139 30 1 -0.4850 0.8401 0.0004 31 1 -0.5502 -2.0913 0.9061 32 1 -0.5617 -2.0454 -0.8790 33 1 -1.2990 -4.2478 -0.6918 34 1 -0.6328 -4.4256 0.9630 35 1 -1.0415 -6.5921 -0.4539 36 1 -0.0033 -6.9464 -1.8556 37 1 0.0551 -8.4371 0.8076 38 1 -0.7055 -9.0296 -0.6893 39 1 1.6145 -9.9455 -0.3280 40 1 1.4563 -9.0207 -1.8420 41 1 2.7889 -10.2642 1.3313 42 1 3.6807 -10.5524 -0.1820 43 1 7.9397 -10.9117 1.8542 44 1 6.5890 -10.4745 4.1487 45 1 2.4861 -6.4874 -1.7196 46 1 3.1935 -6.0616 -0.1399 47 1 2.8325 -3.7374 -0.6299 48 1 2.1685 -4.0464 1.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961179530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = 103.898646 kcal Electronic energy + Delta-G solvation = -29035.520103 eV Core-core repulsion = 25129.009077 eV Total energy + Delta-G solvation = -3906.511027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.73084 -40.53235 -38.42459 -36.79398 -34.22789 -33.59384 -32.59408 -32.36126 -31.25004 -29.33668 -28.59321 -27.09098 -25.43359 -24.63485 -23.08160 -22.89765 -22.32126 -20.97002 -19.89494 -19.54229 -19.38459 -18.08200 -17.58994 -16.81451 -16.26099 -16.06835 -15.65572 -15.22892 -14.85640 -14.64078 -14.59321 -14.48907 -14.02937 -13.90317 -13.53836 -13.51402 -13.14395 -12.66064 -12.40578 -12.13721 -12.04838 -11.83270 -11.80635 -11.33253 -11.08940 -11.03295 -10.98874 -10.84065 -10.75228 -10.63635 -10.49889 -10.43864 -10.07425 -10.01794 -9.80418 -9.76121 -9.56528 -9.44505 -8.85553 -8.55380 -6.77192 -5.66484 -2.99249 1.51035 1.90738 2.20210 2.32476 2.73615 3.43338 3.48360 3.50527 3.89727 3.91192 4.36438 4.44805 4.54338 4.55133 4.64575 4.71803 4.84841 4.87803 5.05019 5.07705 5.16289 5.34696 5.45932 5.48745 5.57578 5.61865 5.67900 5.72688 5.78101 5.84758 5.89566 5.96396 5.98065 6.03316 6.18363 6.23065 6.34419 6.41665 6.45070 6.58355 6.62040 6.77351 7.01099 7.03913 7.61544 7.67937 7.77952 7.87453 8.12466 8.31541 9.27868 9.88245 10.54733 11.45393 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.002637 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.309180 B =10617.196066 C =12101.698026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.177 3.823 11 C -0.135 4.135 12 C -0.095 4.095 13 H 0.075 0.925 14 C -0.086 4.086 15 H 0.074 0.926 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.102 3.898 19 N -0.605 5.605 20 C 0.501 3.499 21 O -0.516 6.516 22 C 0.125 3.875 23 N -0.146 5.146 24 N -0.283 5.283 25 C -0.024 4.024 26 C -0.024 4.024 27 N -0.281 5.281 28 C 0.117 3.883 29 C 0.140 3.860 30 H 0.251 0.749 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.036 0.964 48 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.764 -27.064 -0.349 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.174 4.174 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.153 4.153 17 C -0.174 4.174 18 C -0.020 4.020 19 N -0.339 5.339 20 C 0.286 3.714 21 O -0.391 6.391 22 C 0.000 4.000 23 N -0.045 5.045 24 N -0.123 5.123 25 C -0.207 4.207 26 C -0.207 4.207 27 N -0.121 5.121 28 C -0.005 4.005 29 C 0.014 3.986 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.215 0.785 44 H 0.215 0.785 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.054 0.946 48 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 2.025 -26.179 -0.879 26.272 hybrid contribution 1.170 0.801 0.518 1.509 sum 3.195 -25.378 -0.361 25.581 Atomic orbital electron populations 1.69972 1.04864 1.24888 1.57447 1.24794 0.95724 0.97628 1.02468 0.86124 0.78633 0.83542 0.77540 1.21645 1.21701 1.20690 1.19082 0.90456 0.82512 1.43335 0.90518 1.44485 1.01745 0.99929 1.87108 1.21133 0.84355 0.88400 1.00860 1.22887 0.95878 0.99398 0.99224 1.22315 0.97687 0.91549 0.99929 0.90698 1.21479 0.93384 0.94920 1.00831 0.90758 1.21584 0.99483 0.93546 1.00640 1.21939 0.95985 0.97610 1.01844 1.21863 0.87502 0.92330 1.00352 1.48091 1.21788 1.09898 1.54121 1.20389 0.82442 0.89697 0.78902 1.90819 1.38835 1.57560 1.51856 1.21745 0.83678 0.96481 0.98076 1.47333 1.07870 1.47457 1.01886 1.74038 0.92835 1.16845 1.28601 1.24792 1.01048 1.06066 0.88841 1.24804 0.89343 1.05114 1.01475 1.74063 1.23218 1.18207 0.96610 1.21837 0.99190 0.78789 1.00661 1.21582 0.94220 0.86120 0.96695 0.93861 0.94232 0.93669 0.92401 0.92718 0.90948 0.91662 0.91302 0.90462 0.90285 0.90496 0.84621 0.84661 0.78494 0.78479 0.91038 0.88443 0.94576 0.96535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.77 10.31 55.49 0.57 -27.20 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.75 29.55 -169.99 -5.02 17.73 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.52 10.28 -15.06 -0.15 -6.67 16 8 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 9 N -0.61 -15.99 3.39 -170.06 -0.58 -16.57 16 10 C 0.18 4.37 5.38 -3.06 -0.02 4.36 16 11 C -0.14 -2.47 5.57 -24.89 -0.14 -2.60 16 12 C -0.09 -1.58 2.57 -88.47 -0.23 -1.81 16 13 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 14 C -0.09 -1.11 1.85 -90.50 -0.17 -1.28 16 15 H 0.07 1.06 8.11 -51.93 -0.42 0.64 16 16 C -0.11 -1.11 5.03 -26.69 -0.13 -1.24 16 17 C -0.14 -0.93 6.08 -26.62 -0.16 -1.09 16 18 C 0.10 0.63 6.34 -3.72 -0.02 0.61 16 19 N -0.60 -6.28 2.97 -172.77 -0.51 -6.80 16 20 C 0.50 6.19 7.77 -10.98 -0.09 6.10 16 21 O -0.52 -9.14 15.84 5.56 0.09 -9.05 16 22 C 0.12 1.08 5.37 -5.19 -0.03 1.05 16 23 N -0.15 -1.76 3.44 -11.66 -0.04 -1.80 16 24 N -0.28 -3.48 12.05 30.68 0.37 -3.11 16 25 C -0.02 -0.24 12.20 -17.21 -0.21 -0.45 16 26 C -0.02 -0.24 12.20 -17.21 -0.21 -0.45 16 27 N -0.28 -3.54 12.05 30.68 0.37 -3.17 16 28 C 0.12 1.49 5.41 -3.71 -0.02 1.47 16 29 C 0.14 2.98 5.75 -2.52 -0.01 2.97 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 1.09 7.53 -51.93 -0.39 0.69 16 32 H 0.05 1.23 7.36 -51.93 -0.38 0.85 16 33 H 0.06 0.93 8.11 -51.93 -0.42 0.51 16 34 H 0.05 0.95 8.01 -51.93 -0.42 0.54 16 35 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.26 5.93 -51.93 -0.31 -0.05 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 0.78 7.69 -51.93 -0.40 0.38 16 42 H 0.14 0.73 7.94 -51.93 -0.41 0.32 16 43 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.07 0.86 8.14 -51.92 -0.42 0.43 16 46 H 0.10 1.55 6.42 -51.93 -0.33 1.22 16 47 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.02 0.37 8.04 -51.93 -0.42 -0.05 16 LS Contribution 380.05 15.07 5.73 5.73 Total: -1.00 -38.05 380.05 -8.35 -46.40 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -7.64 Total: -2.74 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.69 Total: 0.57 kcal Atomic # 7 Polarization: -58.82 SS G_CDS: 0.18 Total: -58.64 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -5.02 Total: 17.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -38.05 -8.35 -46.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.300 kcal (2) G-P(sol) polarization free energy of solvation -38.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds