Wall clock time and date at job start Tue Mar 31 2020 18:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00264 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.47021 * 125.64962 * 359.41735 * 9 7 2 11 11 C 1.54339 * 107.26633 * 178.85047 * 10 9 7 12 12 C 1.55158 * 103.02072 * 338.13723 * 11 10 9 13 13 H 1.08998 * 111.00478 * 277.23662 * 12 11 10 14 14 C 1.52995 * 111.00553 * 153.38102 * 12 11 10 15 15 H 1.09002 * 109.49699 * 306.28608 * 14 12 11 16 16 C 1.53039 * 109.49831 * 66.35054 * 14 12 11 17 17 C 1.53033 * 109.53916 * 181.31265 * 16 14 12 18 18 C 1.53185 * 109.31990 * 298.63924 * 17 16 14 19 19 N 1.46923 * 108.77657 * 54.63012 * 18 17 16 20 20 C 1.34779 * 120.63326 * 126.41528 * 19 18 17 21 21 O 1.21282 * 120.00285 * 180.02562 * 20 19 18 22 22 C 1.50700 * 119.99465 * 0.02562 * 20 19 18 23 23 N 1.46502 * 109.46571 * 179.97438 * 22 20 19 24 24 N 1.28605 * 124.61878 * 269.69611 * 23 22 20 25 25 C 1.31385 * 108.71777 * 179.83609 * 24 23 22 26 26 C 1.39678 * 105.89901 * 0.40996 * 25 24 23 27 27 N 1.28605 * 124.61882 * 90.00549 * 23 22 20 28 28 C 1.46927 * 118.74029 * 306.39970 * 19 18 17 29 29 C 1.47426 * 125.64564 * 179.72206 * 9 7 2 30 30 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 31 31 H 1.09000 * 109.88280 * 298.39284 * 10 9 7 32 32 H 1.09001 * 109.88287 * 59.55950 * 10 9 7 33 33 H 1.09000 * 110.85247 * 219.67418 * 11 10 9 34 34 H 1.08994 * 110.67130 * 96.51663 * 11 10 9 35 35 H 1.09003 * 109.46138 * 301.33979 * 16 14 12 36 36 H 1.09006 * 109.45532 * 61.31095 * 16 14 12 37 37 H 1.09003 * 109.49682 * 58.59071 * 17 16 14 38 38 H 1.09004 * 109.50232 * 178.68392 * 17 16 14 39 39 H 1.08995 * 109.59453 * 174.42141 * 18 17 16 40 40 H 1.09001 * 109.58716 * 294.70378 * 18 17 16 41 41 H 1.08999 * 109.47118 * 299.99285 * 22 20 19 42 42 H 1.09002 * 109.47281 * 60.00257 * 22 20 19 43 43 H 1.07997 * 127.04572 * 180.16598 * 25 24 23 44 44 H 1.07999 * 127.05002 * 179.76526 * 26 25 24 45 45 H 1.09008 * 109.58588 * 293.81943 * 28 19 18 46 46 H 1.08998 * 109.59152 * 173.39626 * 28 19 18 47 47 H 1.09003 * 110.37118 * 322.92744 * 29 9 7 48 48 H 1.08998 * 110.36604 * 85.14784 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 -0.1376 -2.5327 -0.0011 11 6 -0.4486 -4.0439 -0.0412 12 6 0.8513 -4.6528 -0.6300 13 1 0.8556 -4.5872 -1.7180 14 6 1.0366 -6.1000 -0.1693 15 1 0.9865 -6.1447 0.9187 16 6 -0.0693 -6.9722 -0.7678 17 6 0.0960 -8.4137 -0.2814 18 6 1.4485 -8.9560 -0.7539 19 7 2.5076 -8.0423 -0.3044 20 6 3.5582 -8.5036 0.4026 21 8 4.4258 -7.7391 0.7683 22 6 3.6549 -9.9695 0.7387 23 7 4.8786 -10.2148 1.5058 24 7 6.0175 -10.5140 0.9887 25 6 6.8940 -10.6620 1.9562 26 6 6.1947 -10.4357 3.1440 27 7 4.9590 -10.1659 2.7884 28 6 2.3998 -6.6161 -0.6406 29 6 1.9333 -3.7311 -0.0139 30 1 -0.4850 0.8401 0.0004 31 1 -0.5502 -2.0913 0.9061 32 1 -0.5617 -2.0454 -0.8790 33 1 -1.2990 -4.2478 -0.6918 34 1 -0.6328 -4.4256 0.9630 35 1 -1.0415 -6.5921 -0.4539 36 1 -0.0033 -6.9464 -1.8556 37 1 0.0551 -8.4371 0.8076 38 1 -0.7055 -9.0296 -0.6893 39 1 1.6145 -9.9455 -0.3280 40 1 1.4563 -9.0207 -1.8420 41 1 2.7889 -10.2642 1.3313 42 1 3.6807 -10.5524 -0.1820 43 1 7.9397 -10.9117 1.8542 44 1 6.5890 -10.4745 4.1487 45 1 2.4861 -6.4874 -1.7196 46 1 3.1935 -6.0616 -0.1399 47 1 2.8325 -3.7374 -0.6299 48 1 2.1685 -4.0464 1.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961179530.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:32 Heat of formation + Delta-G solvation = 76.897157 kcal Electronic energy + Delta-G solvation = -29036.690976 eV Core-core repulsion = 25129.009077 eV Total energy + Delta-G solvation = -3907.681899 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.48204 -41.44413 -39.75201 -38.09458 -35.38508 -34.72164 -33.64525 -33.38682 -32.49902 -31.01024 -29.63792 -28.54193 -26.62407 -26.15892 -24.02656 -23.81867 -23.15789 -21.99759 -21.73250 -20.88904 -20.23127 -18.99107 -18.74450 -18.37077 -17.19501 -16.94419 -16.76647 -16.55448 -16.22878 -15.77812 -15.64932 -15.41862 -15.24106 -15.10560 -14.61205 -14.25963 -14.10533 -14.01446 -13.83983 -13.57939 -13.40080 -13.32604 -12.91040 -12.77220 -12.57919 -12.26156 -12.14468 -12.08845 -11.89201 -11.83614 -11.80358 -11.70691 -11.57112 -11.41750 -11.32756 -11.20582 -11.04717 -10.74696 -10.23778 -9.73516 -8.93865 -7.89417 -5.25119 0.72297 1.24902 1.33419 1.40905 1.43432 1.52348 1.61471 1.94748 2.45570 3.21063 3.27785 3.29020 3.58233 3.62918 3.82720 3.87292 3.94573 3.99957 4.09918 4.15298 4.16243 4.23914 4.28196 4.42613 4.52565 4.58041 4.62930 4.65785 4.79582 4.81258 4.87496 4.90516 4.95612 5.05660 5.07503 5.15120 5.17598 5.34189 5.36630 5.39436 5.40948 5.46337 5.55561 5.66386 5.67695 5.75660 6.16760 6.23391 6.91858 7.07205 7.35912 7.74157 8.38776 9.20866 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.014723 B = 0.002637 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1901.309180 B =10617.196066 C =12101.698026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.066 4.066 3 Si 0.980 3.020 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.075 0.925 9 N -0.630 5.630 10 C 0.182 3.818 11 C -0.118 4.118 12 C -0.076 4.076 13 H 0.082 0.918 14 C -0.073 4.073 15 H 0.057 0.943 16 C -0.113 4.113 17 C -0.130 4.130 18 C 0.094 3.906 19 N -0.598 5.598 20 C 0.495 3.505 21 O -0.584 6.584 22 C 0.124 3.876 23 N -0.158 5.158 24 N -0.312 5.312 25 C -0.026 4.026 26 C -0.027 4.027 27 N -0.314 5.314 28 C 0.119 3.881 29 C 0.136 3.864 30 H 0.248 0.752 31 H 0.000 1.000 32 H 0.013 0.987 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.110 0.890 39 H 0.117 0.883 40 H 0.097 0.903 41 H 0.168 0.832 42 H 0.172 0.828 43 H 0.231 0.769 44 H 0.229 0.771 45 H 0.082 0.918 46 H 0.056 0.944 47 H 0.031 0.969 48 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.335 -30.258 -1.177 30.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.599 5.599 2 C -0.259 4.259 3 Si 0.807 3.193 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.198 1.198 7 C -0.377 4.377 8 H 0.093 0.907 9 N -0.356 5.356 10 C 0.057 3.943 11 C -0.156 4.156 12 C -0.095 4.095 13 H 0.100 0.900 14 C -0.093 4.093 15 H 0.076 0.924 16 C -0.150 4.150 17 C -0.168 4.168 18 C -0.027 4.027 19 N -0.330 5.330 20 C 0.282 3.718 21 O -0.464 6.464 22 C 0.001 3.999 23 N -0.058 5.058 24 N -0.152 5.152 25 C -0.209 4.209 26 C -0.210 4.210 27 N -0.155 5.155 28 C -0.003 4.003 29 C 0.011 3.989 30 H 0.057 0.943 31 H 0.018 0.982 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.128 0.872 39 H 0.135 0.865 40 H 0.115 0.885 41 H 0.185 0.815 42 H 0.189 0.811 43 H 0.247 0.753 44 H 0.246 0.754 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.050 0.950 48 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 1.560 -29.432 -1.731 29.524 hybrid contribution 1.355 1.811 0.805 2.401 sum 2.915 -27.621 -0.926 27.790 Atomic orbital electron populations 1.70194 1.06214 1.25339 1.58144 1.25669 0.96719 1.01010 1.02453 0.85068 0.77530 0.78986 0.77692 1.20854 1.21633 1.19786 1.19441 0.90825 0.84099 1.43343 0.90713 1.44843 1.02789 1.01049 1.86936 1.20952 0.83378 0.92539 0.97424 1.22729 0.97603 0.94429 1.00811 1.22195 0.94500 0.93013 0.99842 0.90011 1.21315 0.95101 0.92935 0.99928 0.92428 1.21591 0.97532 0.94705 1.01208 1.21934 0.97309 0.95927 1.01623 1.22300 0.85565 0.92905 1.01901 1.48174 1.22388 1.09304 1.53154 1.21128 0.81744 0.91034 0.77936 1.90786 1.41405 1.59537 1.54623 1.22091 0.84002 0.93774 1.00045 1.47628 1.08498 1.47848 1.01843 1.73991 0.93611 1.17851 1.29765 1.25449 1.02258 1.04824 0.88324 1.25446 0.88700 1.03799 1.03053 1.74014 1.24746 1.19363 0.97349 1.21576 0.97620 0.80470 1.00662 1.21733 0.95656 0.85166 0.96367 0.94279 0.98175 0.96842 0.89318 0.91716 0.90922 0.90408 0.91919 0.87199 0.86507 0.88452 0.81513 0.81092 0.75252 0.75422 0.89987 0.92575 0.95036 0.97686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.31 10.31 21.65 0.22 -59.09 16 2 C -0.07 -3.92 5.49 84.86 0.47 -3.46 16 3 Si 0.98 47.94 29.55 68.60 2.03 49.97 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 6 H -0.27 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -14.91 10.28 84.04 0.86 -14.05 16 8 H 0.07 4.38 7.83 -2.91 -0.02 4.35 16 9 N -0.63 -34.71 3.39 -691.94 -2.35 -37.06 16 10 C 0.18 9.36 5.38 86.73 0.47 9.83 16 11 C -0.12 -4.23 5.57 31.79 0.18 -4.05 16 12 C -0.08 -2.50 2.57 -9.40 -0.02 -2.52 16 13 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 14 C -0.07 -1.80 1.85 -10.72 -0.02 -1.82 16 15 H 0.06 1.63 8.11 -2.39 -0.02 1.61 16 16 C -0.11 -1.78 5.03 30.62 0.15 -1.63 16 17 C -0.13 -1.19 6.08 30.67 0.19 -1.01 16 18 C 0.09 0.74 6.34 86.36 0.55 1.29 16 19 N -0.60 -11.32 2.97 -818.91 -2.43 -13.75 16 20 C 0.49 11.84 7.77 87.66 0.68 12.52 16 21 O -0.58 -21.52 15.84 -3.03 -0.05 -21.56 16 22 C 0.12 1.85 5.37 85.63 0.46 2.31 16 23 N -0.16 -3.64 3.44 -190.80 -0.66 -4.29 16 24 N -0.31 -7.35 12.05 -56.86 -0.69 -8.04 16 25 C -0.03 -0.47 12.20 85.11 1.04 0.57 16 26 C -0.03 -0.50 12.20 85.11 1.04 0.54 16 27 N -0.31 -7.66 12.05 -56.86 -0.69 -8.34 16 28 C 0.12 3.01 5.41 86.36 0.47 3.48 16 29 C 0.14 6.04 5.75 86.86 0.50 6.54 16 30 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 31 H 0.00 0.00 7.53 -2.39 -0.02 -0.02 16 32 H 0.01 0.76 7.36 -2.39 -0.02 0.74 16 33 H 0.09 2.68 8.11 -2.39 -0.02 2.66 16 34 H 0.06 2.21 8.01 -2.39 -0.02 2.19 16 35 H 0.07 1.19 7.45 -2.39 -0.02 1.17 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.12 0.10 5.93 -2.39 -0.01 0.08 16 40 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.17 1.33 7.69 -2.39 -0.02 1.32 16 42 H 0.17 1.20 7.94 -2.39 -0.02 1.18 16 43 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 44 H 0.23 2.30 8.06 -2.91 -0.02 2.28 16 45 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 46 H 0.06 1.90 6.42 -2.39 -0.02 1.88 16 47 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.01 0.25 8.04 -2.39 -0.02 0.23 16 Total: -1.00 -90.75 380.05 3.34 -87.41 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 0.95 Total: 6.22 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 7.00 Total: 8.54 kcal Atomic # 7 Polarization: -123.99 SS G_CDS: -6.59 Total: -130.58 kcal Atomic # 8 Polarization: -21.52 SS G_CDS: -0.05 Total: -21.56 kcal Atomic # 14 Polarization: 47.94 SS G_CDS: 2.03 Total: 49.97 kcal Total: -90.75 3.34 -87.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179530.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.305 kcal (2) G-P(sol) polarization free energy of solvation -90.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.408 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds