Wall clock time and date at job start Tue Mar 31 2020 18:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99847 * 2 1 4 4 H 1.48493 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47092 * 299.99829 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00444 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64933 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27500 * 178.92005 * 10 9 7 12 12 C 1.55157 * 102.93881 * 337.81120 * 11 10 9 13 13 H 1.09003 * 111.00375 * 277.38588 * 12 11 10 14 14 C 1.52997 * 111.00617 * 153.57628 * 12 11 10 15 15 H 1.09005 * 109.49848 * 300.06562 * 14 12 11 16 16 C 1.53039 * 109.50100 * 179.97438 * 14 12 11 17 17 C 1.53046 * 109.52798 * 178.68859 * 16 14 12 18 18 C 1.53159 * 109.32667 * 61.37318 * 17 16 14 19 19 N 1.46928 * 108.76987 * 305.35456 * 18 17 16 20 20 C 1.34773 * 120.63179 * 233.59029 * 19 18 17 21 21 O 1.21283 * 119.99742 * 180.02562 * 20 19 18 22 22 C 1.50697 * 120.00193 * 0.02562 * 20 19 18 23 23 N 1.46495 * 109.47515 * 180.02562 * 22 20 19 24 24 N 1.28605 * 124.61835 * 269.70195 * 23 22 20 25 25 C 1.31381 * 108.71838 * 179.82896 * 24 23 22 26 26 C 1.39677 * 105.89999 * 0.41152 * 25 24 23 27 27 N 1.28599 * 124.62207 * 90.00233 * 23 22 20 28 28 C 1.46931 * 118.73792 * 53.61250 * 19 18 17 29 29 C 1.47432 * 125.65052 * 179.97438 * 9 7 2 30 30 H 0.97000 * 119.99645 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88478 * 59.50459 * 10 9 7 32 32 H 1.09002 * 110.01230 * 298.41415 * 10 9 7 33 33 H 1.08996 * 110.72465 * 219.44647 * 11 10 9 34 34 H 1.09001 * 110.87306 * 96.23952 * 11 10 9 35 35 H 1.09002 * 109.46050 * 298.70445 * 16 14 12 36 36 H 1.09004 * 109.46034 * 58.67660 * 16 14 12 37 37 H 1.08996 * 109.49379 * 181.30938 * 17 16 14 38 38 H 1.08994 * 109.49581 * 301.40708 * 17 16 14 39 39 H 1.08999 * 109.58991 * 185.56748 * 18 17 16 40 40 H 1.09002 * 109.70860 * 65.20753 * 18 17 16 41 41 H 1.09000 * 109.47385 * 300.00687 * 22 20 19 42 42 H 1.09004 * 109.46735 * 60.00322 * 22 20 19 43 43 H 1.07992 * 127.05048 * 180.16562 * 25 24 23 44 44 H 1.07999 * 127.05233 * 179.72683 * 26 25 24 45 45 H 1.08998 * 109.58425 * 186.61021 * 28 19 18 46 46 H 1.08995 * 109.70793 * 66.24640 * 28 19 18 47 47 H 1.09000 * 110.36402 * 85.30932 * 29 9 7 48 48 H 1.08995 * 110.36574 * 322.99222 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8525 -4.6559 -0.6117 13 1 0.8580 -4.5965 -1.7001 14 6 1.0372 -6.1007 -0.1434 15 1 1.0962 -6.1258 0.9448 16 6 2.3273 -6.6696 -0.7385 17 6 2.5296 -8.1039 -0.2444 18 6 1.3577 -8.9715 -0.7129 19 7 0.1025 -8.3514 -0.2671 20 6 -0.7984 -9.0587 0.4433 21 8 -1.8310 -8.5354 0.8050 22 6 -0.5227 -10.4995 0.7880 23 7 -1.6456 -11.0411 1.5574 24 7 -1.7343 -11.0114 2.8400 25 6 -2.8648 -11.5771 3.1977 26 6 -3.4835 -11.9793 2.0117 27 7 -2.6744 -11.6159 1.0425 28 6 -0.1521 -6.9458 -0.6108 29 6 1.9335 -3.7311 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5569 -2.0520 -0.8843 32 1 -0.5573 -2.0841 0.8998 33 1 -1.2979 -4.2514 -0.6786 34 1 -0.6339 -4.4207 0.9780 35 1 2.2576 -6.6667 -1.8263 36 1 3.1725 -6.0557 -0.4272 37 1 3.4604 -8.5005 -0.6500 38 1 2.5747 -8.1105 0.8446 39 1 1.4459 -9.9687 -0.2817 40 1 1.3643 -9.0419 -1.8007 41 1 -0.3998 -11.0755 -0.1292 42 1 0.3892 -10.5629 1.3818 43 1 -3.2373 -11.7083 4.2028 44 1 -4.4322 -12.4855 1.9119 45 1 -1.0599 -6.6063 -0.1121 46 1 -0.2690 -6.8466 -1.6899 47 1 2.1661 -4.0422 1.0190 48 1 2.8333 -3.7403 -0.6145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961179604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:36 Heat of formation + Delta-G solvation = 103.618247 kcal Electronic energy + Delta-G solvation = -28962.588157 eV Core-core repulsion = 25056.064971 eV Total energy + Delta-G solvation = -3906.523186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.75260 -40.55112 -38.43279 -36.80217 -34.24692 -33.58380 -32.61461 -32.43148 -31.23713 -29.15554 -28.77460 -27.08773 -25.59086 -24.43696 -23.10193 -22.98644 -22.32665 -20.99051 -19.88445 -19.53880 -19.39137 -18.09337 -17.61252 -16.78729 -16.29771 -16.09878 -15.72306 -15.23944 -14.86721 -14.63849 -14.61999 -14.50738 -14.02623 -13.88486 -13.54018 -13.48930 -13.18538 -12.67117 -12.32179 -12.20533 -12.04709 -11.85130 -11.78913 -11.33471 -11.10898 -11.06315 -11.00785 -10.86493 -10.80260 -10.64329 -10.51970 -10.45032 -10.07414 -9.99822 -9.79978 -9.68851 -9.61545 -9.46607 -8.87530 -8.56966 -6.78725 -5.67742 -3.01178 1.49115 1.88663 2.17540 2.30461 2.71698 3.41119 3.46106 3.48975 3.87911 3.89262 4.36028 4.44340 4.52152 4.53338 4.65503 4.71921 4.82996 4.89032 5.04455 5.07607 5.14794 5.33818 5.47601 5.50870 5.51676 5.60086 5.68479 5.73171 5.76133 5.87248 5.94260 5.96078 5.96390 6.01927 6.17802 6.23985 6.34058 6.40535 6.45031 6.59380 6.62287 6.77046 6.99474 7.01846 7.60631 7.69330 7.75115 7.87560 8.10534 8.30218 9.25847 9.86592 10.53300 11.43951 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002328 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.587652 B =12026.794108 C =12839.710529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.010 4.010 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.077 0.923 9 N -0.607 5.607 10 C 0.178 3.822 11 C -0.141 4.141 12 C -0.095 4.095 13 H 0.074 0.926 14 C -0.087 4.087 15 H 0.074 0.926 16 C -0.116 4.116 17 C -0.136 4.136 18 C 0.102 3.898 19 N -0.604 5.604 20 C 0.502 3.498 21 O -0.518 6.518 22 C 0.124 3.876 23 N -0.145 5.145 24 N -0.281 5.281 25 C -0.024 4.024 26 C -0.025 4.025 27 N -0.283 5.283 28 C 0.118 3.882 29 C 0.145 3.855 30 H 0.251 0.749 31 H 0.044 0.956 32 H 0.040 0.960 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.096 0.904 46 H 0.071 0.929 47 H 0.016 0.984 48 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.647 -27.337 -0.244 27.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.333 5.333 10 C 0.053 3.947 11 C -0.179 4.179 12 C -0.115 4.115 13 H 0.093 0.907 14 C -0.106 4.106 15 H 0.093 0.907 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.021 4.021 19 N -0.339 5.339 20 C 0.286 3.714 21 O -0.393 6.393 22 C 0.000 4.000 23 N -0.045 5.045 24 N -0.121 5.121 25 C -0.207 4.207 26 C -0.208 4.208 27 N -0.123 5.123 28 C -0.003 4.003 29 C 0.019 3.981 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.092 0.908 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.153 0.847 42 H 0.154 0.846 43 H 0.215 0.785 44 H 0.215 0.785 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.033 0.967 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 1.114 -26.304 -0.786 26.339 hybrid contribution -0.308 0.620 0.524 0.868 sum 0.806 -25.684 -0.262 25.698 Atomic orbital electron populations 1.69991 1.04873 1.24828 1.57232 1.24815 0.95721 0.97673 1.02432 0.86053 0.78672 0.83879 0.77225 1.20542 1.21796 1.21784 1.19098 0.90410 0.82488 1.43512 0.90476 1.44502 1.01787 0.99937 1.87101 1.21114 0.84265 0.88401 1.00905 1.22933 0.96021 0.99470 0.99495 1.22311 0.97675 0.91593 0.99914 0.90712 1.21476 0.93743 0.94550 1.00868 0.90743 1.21605 0.98297 0.94855 1.00640 1.21934 0.97289 0.96283 1.01862 1.21876 0.83470 0.96314 1.00393 1.48095 1.18889 1.12964 1.53911 1.20384 0.84299 0.87806 0.78873 1.90809 1.25601 1.70668 1.52218 1.21745 0.86512 0.93721 0.98028 1.47329 1.15445 1.39861 1.01893 1.74065 1.22296 1.19183 0.96569 1.24803 0.92319 1.02106 1.01499 1.24793 1.01853 1.05293 0.88832 1.74033 0.97391 1.12274 1.28611 1.21805 0.99969 0.78023 1.00545 1.21510 0.94099 0.86010 0.96487 0.93850 0.93744 0.94161 0.92403 0.92594 0.91625 0.90803 0.90418 0.91272 0.90282 0.90478 0.84654 0.84583 0.78478 0.78491 0.88574 0.91097 0.96656 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.73 10.31 55.49 0.57 -27.15 16 2 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 3 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.23 -6.42 10.28 -15.06 -0.15 -6.58 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.61 -15.77 3.40 -170.09 -0.58 -16.35 16 10 C 0.18 4.45 5.37 -3.06 -0.02 4.43 16 11 C -0.14 -2.70 5.40 -24.90 -0.13 -2.83 16 12 C -0.09 -1.58 2.56 -88.49 -0.23 -1.81 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.09 -1.11 1.86 -90.50 -0.17 -1.28 16 15 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 16 C -0.12 -1.17 5.05 -26.69 -0.13 -1.30 16 17 C -0.14 -0.96 6.08 -26.63 -0.16 -1.12 16 18 C 0.10 0.63 6.34 -3.73 -0.02 0.61 16 19 N -0.60 -6.14 2.97 -172.78 -0.51 -6.65 16 20 C 0.50 6.03 7.77 -10.99 -0.09 5.95 16 21 O -0.52 -8.90 15.84 5.55 0.09 -8.82 16 22 C 0.12 1.05 5.37 -5.20 -0.03 1.02 16 23 N -0.15 -1.72 3.44 -11.66 -0.04 -1.76 16 24 N -0.28 -3.46 12.05 30.67 0.37 -3.09 16 25 C -0.02 -0.23 12.20 -17.21 -0.21 -0.44 16 26 C -0.02 -0.23 12.20 -17.21 -0.21 -0.44 16 27 N -0.28 -3.40 12.05 30.67 0.37 -3.03 16 28 C 0.12 1.46 5.39 -3.70 -0.02 1.44 16 29 C 0.15 2.95 5.94 -2.54 -0.02 2.94 16 30 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.04 1.22 7.38 -51.93 -0.38 0.84 16 32 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.06 8.04 -51.93 -0.42 0.64 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.81 7.46 -51.93 -0.39 0.42 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.08 0.26 5.93 -51.93 -0.31 -0.05 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 0.71 7.94 -51.93 -0.41 0.29 16 42 H 0.14 0.77 7.69 -51.93 -0.40 0.37 16 43 H 0.20 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.20 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.10 1.45 6.38 -51.93 -0.33 1.12 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 47 H 0.02 0.32 7.98 -51.93 -0.41 -0.09 16 48 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -37.71 379.91 -8.35 -46.06 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -7.63 Total: -2.52 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -1.68 Total: 0.19 kcal Atomic # 7 Polarization: -58.22 SS G_CDS: 0.18 Total: -58.04 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.71 -8.35 -46.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.678 kcal (2) G-P(sol) polarization free energy of solvation -37.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds