Wall clock time and date at job start Tue Mar 31 2020 18:25:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99847 * 2 1 4 4 H 1.48493 * 109.46898 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47092 * 299.99829 * 3 2 1 6 6 H 1.48497 * 109.46899 * 60.00021 * 3 2 1 7 7 C 1.38806 * 120.00365 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00444 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99767 * 0.02562 * 7 2 1 10 10 C 1.47019 * 125.64933 * 0.02562 * 9 7 2 11 11 C 1.54325 * 107.27500 * 178.92005 * 10 9 7 12 12 C 1.55157 * 102.93881 * 337.81120 * 11 10 9 13 13 H 1.09003 * 111.00375 * 277.38588 * 12 11 10 14 14 C 1.52997 * 111.00617 * 153.57628 * 12 11 10 15 15 H 1.09005 * 109.49848 * 300.06562 * 14 12 11 16 16 C 1.53039 * 109.50100 * 179.97438 * 14 12 11 17 17 C 1.53046 * 109.52798 * 178.68859 * 16 14 12 18 18 C 1.53159 * 109.32667 * 61.37318 * 17 16 14 19 19 N 1.46928 * 108.76987 * 305.35456 * 18 17 16 20 20 C 1.34773 * 120.63179 * 233.59029 * 19 18 17 21 21 O 1.21283 * 119.99742 * 180.02562 * 20 19 18 22 22 C 1.50697 * 120.00193 * 0.02562 * 20 19 18 23 23 N 1.46495 * 109.47515 * 180.02562 * 22 20 19 24 24 N 1.28605 * 124.61835 * 269.70195 * 23 22 20 25 25 C 1.31381 * 108.71838 * 179.82896 * 24 23 22 26 26 C 1.39677 * 105.89999 * 0.41152 * 25 24 23 27 27 N 1.28599 * 124.62207 * 90.00233 * 23 22 20 28 28 C 1.46931 * 118.73792 * 53.61250 * 19 18 17 29 29 C 1.47432 * 125.65052 * 179.97438 * 9 7 2 30 30 H 0.97000 * 119.99645 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.88478 * 59.50459 * 10 9 7 32 32 H 1.09002 * 110.01230 * 298.41415 * 10 9 7 33 33 H 1.08996 * 110.72465 * 219.44647 * 11 10 9 34 34 H 1.09001 * 110.87306 * 96.23952 * 11 10 9 35 35 H 1.09002 * 109.46050 * 298.70445 * 16 14 12 36 36 H 1.09004 * 109.46034 * 58.67660 * 16 14 12 37 37 H 1.08996 * 109.49379 * 181.30938 * 17 16 14 38 38 H 1.08994 * 109.49581 * 301.40708 * 17 16 14 39 39 H 1.08999 * 109.58991 * 185.56748 * 18 17 16 40 40 H 1.09002 * 109.70860 * 65.20753 * 18 17 16 41 41 H 1.09000 * 109.47385 * 300.00687 * 22 20 19 42 42 H 1.09004 * 109.46735 * 60.00322 * 22 20 19 43 43 H 1.07992 * 127.05048 * 180.16562 * 25 24 23 44 44 H 1.07999 * 127.05233 * 179.72683 * 26 25 24 45 45 H 1.08998 * 109.58425 * 186.61021 * 28 19 18 46 46 H 1.08995 * 109.70793 * 66.24640 * 28 19 18 47 47 H 1.09000 * 110.36402 * 85.30932 * 29 9 7 48 48 H 1.08995 * 110.36574 * 322.99222 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5327 -0.0005 11 6 -0.4484 -4.0441 -0.0279 12 6 0.8525 -4.6559 -0.6117 13 1 0.8580 -4.5965 -1.7001 14 6 1.0372 -6.1007 -0.1434 15 1 1.0962 -6.1258 0.9448 16 6 2.3273 -6.6696 -0.7385 17 6 2.5296 -8.1039 -0.2444 18 6 1.3577 -8.9715 -0.7129 19 7 0.1025 -8.3514 -0.2671 20 6 -0.7984 -9.0587 0.4433 21 8 -1.8310 -8.5354 0.8050 22 6 -0.5227 -10.4995 0.7880 23 7 -1.6456 -11.0411 1.5574 24 7 -1.7343 -11.0114 2.8400 25 6 -2.8648 -11.5771 3.1977 26 6 -3.4835 -11.9793 2.0117 27 7 -2.6744 -11.6159 1.0425 28 6 -0.1521 -6.9458 -0.6108 29 6 1.9335 -3.7311 0.0005 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5569 -2.0520 -0.8843 32 1 -0.5573 -2.0841 0.8998 33 1 -1.2979 -4.2514 -0.6786 34 1 -0.6339 -4.4207 0.9780 35 1 2.2576 -6.6667 -1.8263 36 1 3.1725 -6.0557 -0.4272 37 1 3.4604 -8.5005 -0.6500 38 1 2.5747 -8.1105 0.8446 39 1 1.4459 -9.9687 -0.2817 40 1 1.3643 -9.0419 -1.8007 41 1 -0.3998 -11.0755 -0.1292 42 1 0.3892 -10.5629 1.3818 43 1 -3.2373 -11.7083 4.2028 44 1 -4.4322 -12.4855 1.9119 45 1 -1.0599 -6.6063 -0.1121 46 1 -0.2690 -6.8466 -1.6899 47 1 2.1661 -4.0422 1.0190 48 1 2.8333 -3.7403 -0.6145 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961179604.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:35 Heat of formation + Delta-G solvation = 77.137881 kcal Electronic energy + Delta-G solvation = -28963.736432 eV Core-core repulsion = 25056.064971 eV Total energy + Delta-G solvation = -3907.671460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.47655 -41.44199 -39.75243 -38.09006 -35.37007 -34.70532 -33.66349 -33.37973 -32.56033 -30.76712 -29.86126 -28.50842 -26.65753 -26.06587 -24.03139 -23.81120 -23.16419 -22.10475 -21.64783 -20.88668 -20.21734 -18.92900 -18.78566 -18.35537 -17.18550 -16.97501 -16.74966 -16.56986 -16.21523 -15.76558 -15.63596 -15.44993 -15.24505 -15.07551 -14.48239 -14.30442 -14.15872 -13.98059 -13.83862 -13.60088 -13.39630 -13.28155 -12.85150 -12.80380 -12.57054 -12.33257 -12.11602 -12.10316 -11.96696 -11.79466 -11.77857 -11.72163 -11.51266 -11.43678 -11.32072 -11.19794 -11.02762 -10.74795 -10.23158 -9.73545 -8.92393 -7.86928 -5.23231 0.73165 1.25230 1.33866 1.43354 1.45183 1.55578 1.62235 1.95293 2.47838 3.21253 3.29619 3.31293 3.56139 3.68632 3.80728 3.87080 3.92548 4.00576 4.09155 4.14578 4.16508 4.21508 4.33063 4.41522 4.50807 4.58316 4.61370 4.68561 4.77638 4.82662 4.88301 4.91068 4.94919 5.02660 5.06754 5.13962 5.18090 5.34942 5.35501 5.41297 5.43503 5.46174 5.55080 5.62571 5.68436 5.73758 6.17433 6.23556 6.91842 7.07477 7.36734 7.75931 8.41386 9.24103 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.021894 B = 0.002328 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1278.587652 B =12026.794108 C =12839.710529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.073 4.073 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.291 1.291 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.086 0.914 9 N -0.630 5.630 10 C 0.186 3.814 11 C -0.127 4.127 12 C -0.076 4.076 13 H 0.082 0.918 14 C -0.073 4.073 15 H 0.057 0.943 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.095 3.905 19 N -0.598 5.598 20 C 0.496 3.504 21 O -0.582 6.582 22 C 0.123 3.877 23 N -0.158 5.158 24 N -0.315 5.315 25 C -0.027 4.027 26 C -0.026 4.026 27 N -0.311 5.311 28 C 0.122 3.878 29 C 0.142 3.858 30 H 0.246 0.754 31 H 0.010 0.990 32 H -0.003 1.003 33 H 0.073 0.927 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.098 0.902 41 H 0.171 0.829 42 H 0.166 0.834 43 H 0.229 0.771 44 H 0.231 0.769 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.016 0.984 48 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.712 -30.374 -1.051 30.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.605 5.605 2 C -0.266 4.266 3 Si 0.810 3.190 4 H -0.186 1.186 5 H -0.218 1.218 6 H -0.221 1.221 7 C -0.369 4.369 8 H 0.104 0.896 9 N -0.357 5.357 10 C 0.061 3.939 11 C -0.166 4.166 12 C -0.096 4.096 13 H 0.100 0.900 14 C -0.093 4.093 15 H 0.075 0.925 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.026 4.026 19 N -0.331 5.331 20 C 0.283 3.717 21 O -0.462 6.462 22 C 0.000 4.000 23 N -0.058 5.058 24 N -0.155 5.155 25 C -0.210 4.210 26 C -0.208 4.208 27 N -0.152 5.152 28 C -0.001 4.001 29 C 0.017 3.983 30 H 0.055 0.945 31 H 0.028 0.972 32 H 0.015 0.985 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.135 0.865 40 H 0.116 0.884 41 H 0.189 0.811 42 H 0.184 0.816 43 H 0.246 0.754 44 H 0.247 0.753 45 H 0.081 0.919 46 H 0.102 0.898 47 H 0.034 0.966 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 3.258 -29.393 -1.614 29.617 hybrid contribution -0.963 1.555 0.808 1.999 sum 2.296 -27.838 -0.806 27.944 Atomic orbital electron populations 1.70234 1.06524 1.25150 1.58590 1.25747 0.96646 1.01361 1.02797 0.84956 0.78289 0.79139 0.76643 1.18558 1.21821 1.22128 1.19549 0.91105 0.83701 1.42547 0.89614 1.44858 1.02337 1.01533 1.86927 1.20844 0.84100 0.91742 0.97207 1.22755 0.98200 0.95392 1.00207 1.22197 0.94191 0.93316 0.99892 0.89991 1.21301 0.96025 0.92111 0.99884 0.92463 1.21607 0.95707 0.96748 1.01238 1.21919 0.99031 0.94252 1.01564 1.22280 0.80777 0.97541 1.01955 1.48171 1.20025 1.11859 1.53007 1.21081 0.83487 0.89206 0.77914 1.90778 1.28347 1.72252 1.54814 1.22088 0.86751 0.91245 0.99940 1.47617 1.16062 1.40258 1.01844 1.74017 1.23818 1.20359 0.97310 1.25442 0.91570 1.00903 1.03073 1.25447 1.02566 1.04533 0.88300 1.73987 0.98211 1.13217 1.29767 1.21555 0.98107 0.79677 1.00761 1.21702 0.95451 0.84159 0.96981 0.94519 0.97162 0.98473 0.90881 0.92707 0.90401 0.91654 0.87394 0.91960 0.86497 0.88414 0.81128 0.81618 0.75447 0.75251 0.91931 0.89838 0.96593 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.16 10.31 21.65 0.22 -59.94 16 2 C -0.07 -4.31 5.49 84.86 0.47 -3.85 16 3 Si 0.98 46.98 29.55 68.60 2.03 49.01 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 6 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.24 -13.85 10.28 84.03 0.86 -12.99 16 8 H 0.09 4.67 7.83 -2.91 -0.02 4.64 16 9 N -0.63 -33.70 3.40 -692.04 -2.35 -36.05 16 10 C 0.19 9.86 5.37 86.73 0.47 10.32 16 11 C -0.13 -5.05 5.40 31.78 0.17 -4.88 16 12 C -0.08 -2.51 2.56 -9.41 -0.02 -2.53 16 13 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 14 C -0.07 -1.80 1.86 -10.71 -0.02 -1.82 16 15 H 0.06 1.62 8.08 -2.38 -0.02 1.60 16 16 C -0.12 -1.97 5.05 30.62 0.15 -1.82 16 17 C -0.13 -1.30 6.08 30.66 0.19 -1.11 16 18 C 0.10 0.75 6.34 86.35 0.55 1.29 16 19 N -0.60 -10.83 2.97 -818.95 -2.43 -13.27 16 20 C 0.50 11.34 7.77 87.66 0.68 12.02 16 21 O -0.58 -20.48 15.84 -3.04 -0.05 -20.53 16 22 C 0.12 1.76 5.37 85.63 0.46 2.22 16 23 N -0.16 -3.51 3.44 -190.81 -0.66 -4.17 16 24 N -0.31 -7.45 12.05 -56.87 -0.69 -8.13 16 25 C -0.03 -0.48 12.20 85.11 1.04 0.56 16 26 C -0.03 -0.44 12.20 85.11 1.04 0.59 16 27 N -0.31 -7.11 12.05 -56.86 -0.69 -7.79 16 28 C 0.12 2.89 5.39 86.36 0.47 3.35 16 29 C 0.14 5.76 5.94 86.84 0.52 6.28 16 30 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.01 0.60 7.38 -2.39 -0.02 0.58 16 32 H 0.00 -0.18 7.50 -2.39 -0.02 -0.20 16 33 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.06 1.25 7.46 -2.39 -0.02 1.23 16 37 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.09 5.93 -2.39 -0.01 0.08 16 40 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.17 1.11 7.94 -2.39 -0.02 1.09 16 42 H 0.17 1.27 7.69 -2.39 -0.02 1.26 16 43 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 45 H 0.06 1.94 6.38 -2.39 -0.02 1.92 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.02 0.66 7.98 -2.39 -0.02 0.64 16 48 H 0.05 1.87 8.05 -2.39 -0.02 1.85 16 Total: -1.00 -89.00 379.91 3.35 -85.65 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.95 Total: 7.57 kcal Atomic # 6 Polarization: 0.64 SS G_CDS: 7.01 Total: 7.65 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -6.59 Total: -129.34 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: -0.05 Total: -20.53 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -89.00 3.35 -85.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179604.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.788 kcal (2) G-P(sol) polarization free energy of solvation -88.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds