Wall clock time and date at job start Tue Mar 31 2020 18:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00371 * 2 1 4 4 H 1.48495 * 109.47483 * 274.99145 * 3 2 1 5 5 H 1.48506 * 109.46748 * 34.98910 * 3 2 1 6 6 H 1.48502 * 109.47198 * 154.98327 * 3 2 1 7 7 C 1.38811 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00029 * 186.82804 * 7 2 1 9 9 N 1.36936 * 120.00069 * 6.82962 * 7 2 1 10 10 C 1.47427 * 125.64800 * 173.90313 * 9 7 2 11 11 C 1.54909 * 104.83486 * 155.90922 * 10 9 7 12 12 C 1.55152 * 101.58463 * 37.00316 * 11 10 9 13 13 H 1.09003 * 110.71923 * 83.04137 * 12 11 10 14 14 C 1.52992 * 110.72446 * 206.13860 * 12 11 10 15 15 H 1.08999 * 109.49712 * 59.93440 * 14 12 11 16 16 C 1.53045 * 109.50162 * 180.02562 * 14 12 11 17 17 C 1.53039 * 109.53826 * 181.35210 * 16 14 12 18 18 C 1.53195 * 109.30838 * 298.63021 * 17 16 14 19 19 N 1.46922 * 108.77655 * 54.64315 * 18 17 16 20 20 C 1.34775 * 120.63477 * 126.36555 * 19 18 17 21 21 O 1.21280 * 120.00008 * 179.72386 * 20 19 18 22 22 C 1.50702 * 119.99724 * 359.97438 * 20 19 18 23 23 N 1.46500 * 109.47062 * 179.72667 * 22 20 19 24 24 N 1.28602 * 124.61563 * 269.70020 * 23 22 20 25 25 C 1.31381 * 108.71416 * 179.82838 * 24 23 22 26 26 C 1.39673 * 105.90279 * 0.41484 * 25 24 23 27 27 N 1.28602 * 124.62006 * 89.99947 * 23 22 20 28 28 C 1.46926 * 118.73324 * 306.63929 * 19 18 17 29 29 C 1.47021 * 125.65115 * 353.93884 * 9 7 2 30 30 H 0.97008 * 119.99963 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.37312 * 37.06596 * 10 9 7 32 32 H 1.09004 * 110.36607 * 274.74257 * 10 9 7 33 33 H 1.09003 * 110.99786 * 278.93411 * 11 10 9 34 34 H 1.08999 * 111.00822 * 155.08508 * 11 10 9 35 35 H 1.08997 * 109.45769 * 61.32511 * 16 14 12 36 36 H 1.09001 * 109.44351 * 301.36194 * 16 14 12 37 37 H 1.08998 * 109.49427 * 178.68318 * 17 16 14 38 38 H 1.08999 * 109.52845 * 58.60260 * 17 16 14 39 39 H 1.08998 * 109.59135 * 294.84838 * 18 17 16 40 40 H 1.09004 * 109.57935 * 174.42505 * 18 17 16 41 41 H 1.09001 * 109.47238 * 299.72507 * 22 20 19 42 42 H 1.09000 * 109.46934 * 59.72838 * 22 20 19 43 43 H 1.08007 * 127.04934 * 180.16091 * 25 24 23 44 44 H 1.07998 * 127.05230 * 179.76504 * 26 25 24 45 45 H 1.09001 * 109.58665 * 173.14738 * 28 19 18 46 46 H 1.09001 * 109.59090 * 293.56548 * 28 19 18 47 47 H 1.09003 * 109.87723 * 61.61221 * 29 9 7 48 48 H 1.08997 * 109.88314 * 300.44463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0101 -1.2022 -0.0005 8 1 3.0843 -1.2056 0.1107 9 7 1.3327 -2.3838 -0.1421 10 6 1.9486 -3.7154 -0.2867 11 6 0.8659 -4.7086 0.2040 12 6 -0.4315 -4.0408 -0.3233 13 1 -0.6027 -4.3020 -1.3676 14 6 -1.6331 -4.4386 0.5362 15 1 -1.4656 -4.1203 1.5651 16 6 -2.8955 -3.7660 -0.0081 17 6 -4.0922 -4.1364 0.8710 18 6 -4.2982 -5.6540 0.8330 19 7 -3.0415 -6.3115 1.2164 20 6 -3.0176 -7.2200 2.2117 21 8 -1.9747 -7.7595 2.5154 22 6 -4.2879 -7.5696 2.9434 23 7 -4.0003 -8.5777 3.9667 24 7 -4.0554 -9.8484 3.7763 25 6 -3.7363 -10.4567 4.8962 26 6 -3.4814 -9.4433 5.8230 27 7 -3.6637 -8.3126 5.1793 28 6 -1.8103 -5.9554 0.4983 29 6 -0.1294 -2.5345 -0.1758 30 1 -0.4850 0.8401 0.0004 31 1 2.8413 -3.7900 0.3344 32 1 2.1948 -3.9081 -1.3309 33 1 0.8582 -4.7719 1.2921 34 1 1.0077 -5.6930 -0.2420 35 1 -3.0759 -4.1041 -1.0284 36 1 -2.7616 -2.6843 -0.0022 37 1 -4.9866 -3.6384 0.4966 38 1 -3.9024 -3.8205 1.8968 39 1 -4.5779 -5.9597 -0.1751 40 1 -5.0853 -5.9334 1.5334 41 1 -4.6918 -6.6752 3.4179 42 1 -5.0166 -7.9667 2.2368 43 1 -3.6858 -11.5221 5.0665 44 1 -3.1931 -9.5644 6.8567 45 1 -0.9562 -6.4337 0.9777 46 1 -1.8828 -6.2862 -0.5378 47 1 -0.5387 -1.9894 -1.0263 48 1 -0.5623 -2.1587 0.7512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961179610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:39 Heat of formation + Delta-G solvation = 103.289478 kcal Electronic energy + Delta-G solvation = -29204.917001 eV Core-core repulsion = 25298.379559 eV Total energy + Delta-G solvation = -3906.537442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.71609 -40.46988 -38.36537 -36.75122 -34.18246 -33.46428 -32.57913 -32.40252 -31.33962 -29.15267 -28.39834 -27.23267 -25.46887 -24.41423 -23.06554 -22.92160 -22.26462 -20.89933 -20.00687 -19.36690 -19.25136 -18.02357 -17.54631 -16.80648 -16.23211 -16.03148 -15.71014 -15.21539 -14.94558 -14.57664 -14.42714 -14.32071 -14.03618 -13.80776 -13.46647 -13.40054 -13.03031 -12.60605 -12.36190 -12.29545 -11.82111 -11.77960 -11.55817 -11.33128 -11.19161 -10.97019 -10.91826 -10.83391 -10.75922 -10.52937 -10.48531 -10.42241 -10.04220 -9.88988 -9.81200 -9.73565 -9.60676 -9.42507 -8.77663 -8.55540 -6.78588 -5.71113 -3.01927 1.53569 1.93058 2.23902 2.33689 2.79735 3.40816 3.46312 3.47867 3.92588 3.96816 4.45023 4.51902 4.55280 4.59282 4.81833 4.86742 4.88122 5.04667 5.14099 5.18532 5.24254 5.45284 5.48979 5.51247 5.64036 5.69229 5.78818 5.79781 5.80590 5.96361 5.99264 6.05421 6.07561 6.09094 6.26489 6.36087 6.43052 6.49994 6.52497 6.65395 6.67903 6.76343 7.02669 7.10038 7.58187 7.65140 7.81598 7.83646 8.14350 8.28612 9.24911 9.85423 10.52997 11.41370 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.002491 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.903418 B =11237.114416 C =11554.187959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.009 4.009 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.225 4.225 8 H 0.077 0.923 9 N -0.608 5.608 10 C 0.133 3.867 11 C -0.129 4.129 12 C -0.108 4.108 13 H 0.066 0.934 14 C -0.083 4.083 15 H 0.074 0.926 16 C -0.117 4.117 17 C -0.136 4.136 18 C 0.102 3.898 19 N -0.603 5.603 20 C 0.502 3.498 21 O -0.522 6.522 22 C 0.124 3.876 23 N -0.144 5.144 24 N -0.283 5.283 25 C -0.025 4.025 26 C -0.025 4.025 27 N -0.280 5.280 28 C 0.118 3.882 29 C 0.189 3.811 30 H 0.251 0.749 31 H 0.036 0.964 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.043 0.957 48 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.605 -17.393 4.690 23.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.205 4.205 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.335 5.335 10 C 0.007 3.993 11 C -0.167 4.167 12 C -0.128 4.128 13 H 0.085 0.915 14 C -0.102 4.102 15 H 0.093 0.907 16 C -0.154 4.154 17 C -0.174 4.174 18 C -0.020 4.020 19 N -0.337 5.337 20 C 0.287 3.713 21 O -0.397 6.397 22 C -0.001 4.001 23 N -0.044 5.044 24 N -0.124 5.124 25 C -0.208 4.208 26 C -0.208 4.208 27 N -0.120 5.120 28 C -0.004 4.004 29 C 0.065 3.935 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.035 0.965 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.155 0.845 42 H 0.154 0.846 43 H 0.215 0.785 44 H 0.215 0.785 45 H 0.111 0.889 46 H 0.087 0.913 47 H 0.061 0.939 48 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -14.367 -16.494 3.893 22.218 hybrid contribution 0.641 0.318 0.641 0.961 sum -13.726 -16.175 4.534 21.694 Atomic orbital electron populations 1.69969 1.04845 1.24846 1.57216 1.24795 0.95736 0.97573 1.02408 0.86130 0.78725 0.83694 0.77452 1.21683 1.21825 1.20685 1.19083 0.91110 0.82656 1.42543 0.90527 1.44509 1.01733 1.01264 1.85952 1.21553 0.94697 0.86127 0.96948 1.22800 0.96155 0.97408 1.00387 1.22459 0.92638 0.99981 0.97742 0.91515 1.21366 0.95267 0.92852 1.00741 0.90747 1.21598 0.93033 1.02489 0.98319 1.21942 0.99763 0.93930 1.01727 1.21906 0.84889 0.94033 1.01222 1.48093 1.10527 1.40357 1.34678 1.20362 0.90204 0.80207 0.80522 1.90790 1.32123 1.51784 1.64982 1.21763 0.97702 0.91276 0.89323 1.47341 1.46966 1.03252 1.06881 1.74030 1.19315 0.92390 1.26627 1.24782 1.05030 1.01925 0.89113 1.24800 1.05903 0.87832 1.02289 1.74077 1.16033 1.28246 0.93645 1.21751 0.86155 0.96325 0.96122 1.21132 0.84357 0.87369 1.00664 0.93906 0.94545 0.96502 0.91815 0.92391 0.91986 0.89827 0.90439 0.91261 0.90525 0.90366 0.84534 0.84641 0.78528 0.78508 0.88865 0.91329 0.93893 0.93903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.76 10.36 55.49 0.58 -26.19 16 2 C -0.01 -0.26 5.48 -17.43 -0.10 -0.35 16 3 Si 0.91 22.26 29.56 -169.99 -5.02 17.23 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.23 -6.39 10.26 -15.06 -0.15 -6.54 16 8 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 9 N -0.61 -15.76 3.39 -170.07 -0.58 -16.34 16 10 C 0.13 2.84 7.23 -2.53 -0.02 2.82 16 11 C -0.13 -2.31 5.49 -24.58 -0.13 -2.45 16 12 C -0.11 -1.92 2.50 -88.79 -0.22 -2.14 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 14 C -0.08 -1.22 1.73 -90.72 -0.16 -1.38 16 15 H 0.07 1.27 8.06 -51.93 -0.42 0.85 16 16 C -0.12 -1.49 5.03 -26.69 -0.13 -1.62 16 17 C -0.14 -1.27 6.08 -26.61 -0.16 -1.43 16 18 C 0.10 0.78 6.34 -3.71 -0.02 0.75 16 19 N -0.60 -6.74 2.98 -173.03 -0.52 -7.26 16 20 C 0.50 6.42 7.77 -10.99 -0.09 6.34 16 21 O -0.52 -9.19 15.84 5.56 0.09 -9.10 16 22 C 0.12 1.14 5.36 -5.19 -0.03 1.12 16 23 N -0.14 -1.79 3.44 -11.66 -0.04 -1.83 16 24 N -0.28 -3.51 12.05 30.68 0.37 -3.14 16 25 C -0.03 -0.25 12.20 -17.21 -0.21 -0.46 16 26 C -0.03 -0.25 12.20 -17.21 -0.21 -0.46 16 27 N -0.28 -3.61 12.05 30.67 0.37 -3.24 16 28 C 0.12 1.55 5.36 -3.93 -0.02 1.53 16 29 C 0.19 4.46 4.10 -3.06 -0.01 4.45 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.08 1.29 7.45 -51.93 -0.39 0.91 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.36 5.94 -51.93 -0.31 0.05 16 41 H 0.14 0.91 7.71 -51.93 -0.40 0.51 16 42 H 0.14 0.80 7.93 -51.93 -0.41 0.39 16 43 H 0.20 1.11 8.06 -52.48 -0.42 0.69 16 44 H 0.20 1.20 8.06 -52.49 -0.42 0.78 16 45 H 0.09 1.43 6.36 -51.93 -0.33 1.10 16 46 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.04 1.12 7.37 -51.93 -0.38 0.74 16 48 H 0.04 1.12 7.16 -51.93 -0.37 0.75 16 LS Contribution 379.70 15.07 5.72 5.72 Total: -1.00 -36.78 379.70 -8.33 -45.11 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -7.63 Total: -1.13 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -1.67 Total: 0.16 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: 0.18 Total: -58.00 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.09 Total: -9.10 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.78 -8.33 -45.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.396 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds