Wall clock time and date at job start Tue Mar 31 2020 18:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00371 * 2 1 4 4 H 1.48495 * 109.47483 * 274.99145 * 3 2 1 5 5 H 1.48506 * 109.46748 * 34.98910 * 3 2 1 6 6 H 1.48502 * 109.47198 * 154.98327 * 3 2 1 7 7 C 1.38811 * 119.99584 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00029 * 186.82804 * 7 2 1 9 9 N 1.36936 * 120.00069 * 6.82962 * 7 2 1 10 10 C 1.47427 * 125.64800 * 173.90313 * 9 7 2 11 11 C 1.54909 * 104.83486 * 155.90922 * 10 9 7 12 12 C 1.55152 * 101.58463 * 37.00316 * 11 10 9 13 13 H 1.09003 * 110.71923 * 83.04137 * 12 11 10 14 14 C 1.52992 * 110.72446 * 206.13860 * 12 11 10 15 15 H 1.08999 * 109.49712 * 59.93440 * 14 12 11 16 16 C 1.53045 * 109.50162 * 180.02562 * 14 12 11 17 17 C 1.53039 * 109.53826 * 181.35210 * 16 14 12 18 18 C 1.53195 * 109.30838 * 298.63021 * 17 16 14 19 19 N 1.46922 * 108.77655 * 54.64315 * 18 17 16 20 20 C 1.34775 * 120.63477 * 126.36555 * 19 18 17 21 21 O 1.21280 * 120.00008 * 179.72386 * 20 19 18 22 22 C 1.50702 * 119.99724 * 359.97438 * 20 19 18 23 23 N 1.46500 * 109.47062 * 179.72667 * 22 20 19 24 24 N 1.28602 * 124.61563 * 269.70020 * 23 22 20 25 25 C 1.31381 * 108.71416 * 179.82838 * 24 23 22 26 26 C 1.39673 * 105.90279 * 0.41484 * 25 24 23 27 27 N 1.28602 * 124.62006 * 89.99947 * 23 22 20 28 28 C 1.46926 * 118.73324 * 306.63929 * 19 18 17 29 29 C 1.47021 * 125.65115 * 353.93884 * 9 7 2 30 30 H 0.97008 * 119.99963 * 359.97438 * 1 2 3 31 31 H 1.08997 * 110.37312 * 37.06596 * 10 9 7 32 32 H 1.09004 * 110.36607 * 274.74257 * 10 9 7 33 33 H 1.09003 * 110.99786 * 278.93411 * 11 10 9 34 34 H 1.08999 * 111.00822 * 155.08508 * 11 10 9 35 35 H 1.08997 * 109.45769 * 61.32511 * 16 14 12 36 36 H 1.09001 * 109.44351 * 301.36194 * 16 14 12 37 37 H 1.08998 * 109.49427 * 178.68318 * 17 16 14 38 38 H 1.08999 * 109.52845 * 58.60260 * 17 16 14 39 39 H 1.08998 * 109.59135 * 294.84838 * 18 17 16 40 40 H 1.09004 * 109.57935 * 174.42505 * 18 17 16 41 41 H 1.09001 * 109.47238 * 299.72507 * 22 20 19 42 42 H 1.09000 * 109.46934 * 59.72838 * 22 20 19 43 43 H 1.08007 * 127.04934 * 180.16091 * 25 24 23 44 44 H 1.07998 * 127.05230 * 179.76504 * 26 25 24 45 45 H 1.09001 * 109.58665 * 173.14738 * 28 19 18 46 46 H 1.09001 * 109.59090 * 293.56548 * 28 19 18 47 47 H 1.09003 * 109.87723 * 61.61221 * 29 9 7 48 48 H 1.08997 * 109.88314 * 300.44463 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.3923 2.1073 -1.3947 5 1 1.5044 2.6198 0.8029 6 1 3.5965 1.4119 0.5921 7 6 2.0101 -1.2022 -0.0005 8 1 3.0843 -1.2056 0.1107 9 7 1.3327 -2.3838 -0.1421 10 6 1.9486 -3.7154 -0.2867 11 6 0.8659 -4.7086 0.2040 12 6 -0.4315 -4.0408 -0.3233 13 1 -0.6027 -4.3020 -1.3676 14 6 -1.6331 -4.4386 0.5362 15 1 -1.4656 -4.1203 1.5651 16 6 -2.8955 -3.7660 -0.0081 17 6 -4.0922 -4.1364 0.8710 18 6 -4.2982 -5.6540 0.8330 19 7 -3.0415 -6.3115 1.2164 20 6 -3.0176 -7.2200 2.2117 21 8 -1.9747 -7.7595 2.5154 22 6 -4.2879 -7.5696 2.9434 23 7 -4.0003 -8.5777 3.9667 24 7 -4.0554 -9.8484 3.7763 25 6 -3.7363 -10.4567 4.8962 26 6 -3.4814 -9.4433 5.8230 27 7 -3.6637 -8.3126 5.1793 28 6 -1.8103 -5.9554 0.4983 29 6 -0.1294 -2.5345 -0.1758 30 1 -0.4850 0.8401 0.0004 31 1 2.8413 -3.7900 0.3344 32 1 2.1948 -3.9081 -1.3309 33 1 0.8582 -4.7719 1.2921 34 1 1.0077 -5.6930 -0.2420 35 1 -3.0759 -4.1041 -1.0284 36 1 -2.7616 -2.6843 -0.0022 37 1 -4.9866 -3.6384 0.4966 38 1 -3.9024 -3.8205 1.8968 39 1 -4.5779 -5.9597 -0.1751 40 1 -5.0853 -5.9334 1.5334 41 1 -4.6918 -6.6752 3.4179 42 1 -5.0166 -7.9667 2.2368 43 1 -3.6858 -11.5221 5.0665 44 1 -3.1931 -9.5644 6.8567 45 1 -0.9562 -6.4337 0.9777 46 1 -1.8828 -6.2862 -0.5378 47 1 -0.5387 -1.9894 -1.0263 48 1 -0.5623 -2.1587 0.7512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961179610.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:38 Heat of formation + Delta-G solvation = 77.811270 kcal Electronic energy + Delta-G solvation = -29206.021819 eV Core-core repulsion = 25298.379559 eV Total energy + Delta-G solvation = -3907.642260 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.47494 -41.45357 -39.74981 -38.07937 -35.30308 -34.68447 -33.82242 -33.37738 -32.64414 -30.50189 -29.79258 -28.66826 -26.65046 -26.05205 -24.06035 -23.80585 -23.17357 -22.11862 -21.64475 -20.79287 -20.22280 -18.93426 -18.80099 -18.34763 -17.18723 -17.14466 -16.80223 -16.41345 -16.13550 -15.74762 -15.66858 -15.39063 -15.25220 -15.11523 -14.42476 -14.40078 -14.16403 -14.07407 -13.68083 -13.47244 -13.40917 -13.33725 -12.84459 -12.71622 -12.57309 -12.54958 -12.15783 -12.05410 -11.95398 -11.78855 -11.78051 -11.72962 -11.50071 -11.39366 -11.32057 -11.17740 -11.04819 -10.70672 -10.23040 -9.73681 -8.89006 -7.87546 -5.21483 0.73703 1.24598 1.33507 1.43084 1.45015 1.53801 1.62907 1.95850 2.47735 3.20452 3.29824 3.30041 3.63004 3.67710 3.80480 3.87979 3.94249 4.00624 4.06681 4.12549 4.16503 4.20604 4.33731 4.41744 4.52971 4.59675 4.61971 4.67571 4.77720 4.78357 4.85773 4.88726 4.96854 5.03124 5.07763 5.14247 5.18385 5.35614 5.38599 5.39951 5.40441 5.48302 5.50903 5.68057 5.73188 5.77736 6.19715 6.23188 6.90707 7.10176 7.37373 7.77200 8.42860 9.23071 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.019632 B = 0.002491 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.903418 B =11237.114416 C =11554.187959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.064 4.064 3 Si 0.977 3.023 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.271 1.271 7 C -0.247 4.247 8 H 0.077 0.923 9 N -0.634 5.634 10 C 0.125 3.875 11 C -0.115 4.115 12 C -0.094 4.094 13 H 0.085 0.915 14 C -0.071 4.071 15 H 0.041 0.959 16 C -0.115 4.115 17 C -0.130 4.130 18 C 0.100 3.900 19 N -0.599 5.599 20 C 0.498 3.502 21 O -0.580 6.580 22 C 0.122 3.878 23 N -0.158 5.158 24 N -0.310 5.310 25 C -0.025 4.025 26 C -0.027 4.027 27 N -0.317 5.317 28 C 0.126 3.874 29 C 0.204 3.796 30 H 0.247 0.753 31 H 0.035 0.965 32 H 0.028 0.972 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.104 0.896 38 H 0.054 0.946 39 H 0.102 0.898 40 H 0.118 0.882 41 H 0.162 0.838 42 H 0.173 0.827 43 H 0.233 0.767 44 H 0.229 0.771 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.009 0.991 48 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.320 -19.214 4.400 25.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.212 1.212 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.376 4.376 8 H 0.095 0.905 9 N -0.361 5.361 10 C 0.000 4.000 11 C -0.153 4.153 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.091 4.091 15 H 0.060 0.940 16 C -0.153 4.153 17 C -0.168 4.168 18 C -0.021 4.021 19 N -0.331 5.331 20 C 0.285 3.715 21 O -0.459 6.459 22 C -0.001 4.001 23 N -0.058 5.058 24 N -0.150 5.150 25 C -0.207 4.207 26 C -0.210 4.210 27 N -0.157 5.157 28 C 0.004 3.996 29 C 0.079 3.921 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.122 0.878 38 H 0.073 0.927 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.180 0.820 42 H 0.190 0.810 43 H 0.249 0.751 44 H 0.246 0.754 45 H 0.087 0.913 46 H 0.108 0.892 47 H 0.027 0.973 48 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges -16.103 -18.316 3.582 24.650 hybrid contribution 1.231 0.885 0.756 1.694 sum -14.872 -17.431 4.338 23.320 Atomic orbital electron populations 1.70191 1.06109 1.25196 1.57854 1.25652 0.96721 1.00874 1.02522 0.85085 0.77781 0.79265 0.77369 1.21211 1.21940 1.19558 1.19445 0.91530 0.84101 1.42550 0.90474 1.44891 1.02930 1.02358 1.85880 1.21768 0.95607 0.85024 0.97598 1.22719 0.94712 0.98144 0.99768 1.22323 0.94054 0.95532 0.99469 0.89699 1.21179 0.95067 0.94659 0.98215 0.94021 1.21555 0.93651 0.99918 1.00151 1.21914 0.98967 0.95888 1.00075 1.22241 0.84020 0.91921 1.03919 1.48174 1.11023 1.39966 1.33962 1.21032 0.90752 0.79540 0.80183 1.90757 1.34471 1.54050 1.66660 1.22078 0.96150 0.92286 0.89605 1.47598 1.47546 1.03566 1.07069 1.73987 1.20347 0.92834 1.27869 1.25458 1.03512 1.03533 0.88243 1.25449 1.04646 0.87225 1.03666 1.74035 1.17331 1.29828 0.94530 1.21483 0.86831 0.94067 0.97247 1.20838 0.83138 0.90976 0.97163 0.94378 0.94625 0.95400 0.93060 0.88852 0.90174 0.93583 0.87801 0.92747 0.87943 0.86383 0.82017 0.80968 0.75114 0.75448 0.91258 0.89207 0.97318 0.97759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.32 10.36 21.65 0.22 -57.10 16 2 C -0.06 -3.76 5.48 84.86 0.47 -3.29 16 3 Si 0.98 46.78 29.56 68.60 2.03 48.80 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.25 -14.45 10.26 84.03 0.86 -13.59 16 8 H 0.08 4.36 7.84 -2.91 -0.02 4.33 16 9 N -0.63 -34.09 3.39 -691.98 -2.35 -36.44 16 10 C 0.13 5.40 7.23 86.85 0.63 6.02 16 11 C -0.12 -4.12 5.49 31.98 0.18 -3.94 16 12 C -0.09 -3.37 2.50 -9.61 -0.02 -3.40 16 13 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 14 C -0.07 -2.14 1.73 -10.86 -0.02 -2.16 16 15 H 0.04 1.51 8.06 -2.39 -0.02 1.49 16 16 C -0.12 -2.90 5.03 30.62 0.15 -2.75 16 17 C -0.13 -2.18 6.08 30.67 0.19 -2.00 16 18 C 0.10 1.14 6.34 86.36 0.55 1.68 16 19 N -0.60 -12.20 2.98 -819.74 -2.44 -14.64 16 20 C 0.50 12.08 7.77 87.66 0.68 12.76 16 21 O -0.58 -20.57 15.84 -3.03 -0.05 -20.62 16 22 C 0.12 1.95 5.36 85.63 0.46 2.41 16 23 N -0.16 -3.67 3.44 -190.80 -0.66 -4.33 16 24 N -0.31 -7.19 12.05 -56.86 -0.69 -7.88 16 25 C -0.02 -0.43 12.20 85.11 1.04 0.61 16 26 C -0.03 -0.50 12.20 85.11 1.04 0.54 16 27 N -0.32 -7.87 12.05 -56.87 -0.69 -8.55 16 28 C 0.13 3.18 5.36 86.22 0.46 3.64 16 29 C 0.20 10.11 4.10 86.73 0.36 10.47 16 30 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 31 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.05 1.95 8.05 -2.39 -0.02 1.93 16 34 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 35 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.51 7.45 -2.39 -0.02 1.49 16 37 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.12 0.47 5.94 -2.39 -0.01 0.46 16 41 H 0.16 1.67 7.71 -2.39 -0.02 1.65 16 42 H 0.17 1.35 7.93 -2.39 -0.02 1.34 16 43 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 44 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.07 2.12 6.36 -2.39 -0.02 2.10 16 46 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.01 0.48 7.37 -2.39 -0.02 0.46 16 48 H 0.00 0.24 7.16 -2.39 -0.02 0.22 16 Total: -1.00 -86.58 379.70 3.35 -83.23 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.95 Total: 10.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: 7.01 Total: 7.01 kcal Atomic # 7 Polarization: -122.35 SS G_CDS: -6.59 Total: -128.94 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.05 Total: -20.62 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.80 kcal Total: -86.58 3.35 -83.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179610.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.044 kcal (2) G-P(sol) polarization free energy of solvation -86.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds