Wall clock time and date at job start Tue Mar 31 2020 18:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48510 * 109.46821 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47392 * 299.99687 * 3 2 1 6 6 H 1.48495 * 109.47288 * 60.00196 * 3 2 1 7 7 C 1.38811 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64970 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83476 * 155.90799 * 10 9 7 12 12 C 1.55157 * 101.57847 * 37.01147 * 11 10 9 13 13 H 1.08998 * 110.72638 * 83.03908 * 12 11 10 14 14 C 1.53000 * 110.72101 * 206.13507 * 12 11 10 15 15 H 1.09006 * 109.52228 * 57.47483 * 14 12 11 16 16 C 1.53039 * 109.49944 * 297.39876 * 14 12 11 17 17 C 1.53040 * 109.54187 * 178.68142 * 16 14 12 18 18 C 1.52758 * 109.38409 * 61.23765 * 17 16 14 19 19 N 1.46928 * 109.01028 * 305.59315 * 18 17 16 20 20 C 1.34776 * 120.62915 * 233.58581 * 19 18 17 21 21 O 1.21282 * 120.00017 * 179.71847 * 20 19 18 22 22 C 1.50698 * 120.00219 * 359.71226 * 20 19 18 23 23 N 1.46501 * 109.47578 * 180.02562 * 22 20 19 24 24 N 1.28593 * 124.62039 * 270.04680 * 23 22 20 25 25 C 1.31382 * 108.71834 * 179.97438 * 24 23 22 26 26 C 1.39675 * 105.89780 * 359.97438 * 25 24 23 27 27 N 1.28602 * 124.61405 * 90.00024 * 23 22 20 28 28 C 1.46925 * 118.73954 * 53.30338 * 19 18 17 29 29 C 1.47318 * 125.61719 * 180.20354 * 9 7 2 30 30 H 0.97004 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36875 * 37.07145 * 10 9 7 32 32 H 1.08998 * 110.36677 * 274.74811 * 10 9 7 33 33 H 1.08996 * 111.00811 * 278.93955 * 11 10 9 34 34 H 1.09003 * 111.03931 * 155.09511 * 11 10 9 35 35 H 1.09004 * 109.45990 * 298.70338 * 16 14 12 36 36 H 1.09006 * 109.46052 * 58.67000 * 16 14 12 37 37 H 1.09000 * 109.49785 * 181.31520 * 17 16 14 38 38 H 1.08998 * 109.49716 * 301.41051 * 17 16 14 39 39 H 1.08991 * 109.51390 * 185.70589 * 18 17 16 40 40 H 1.09004 * 109.43094 * 65.42136 * 18 17 16 41 41 H 1.09002 * 109.46966 * 60.00218 * 22 20 19 42 42 H 1.08999 * 109.47246 * 300.01050 * 22 20 19 43 43 H 1.08005 * 127.04646 * 180.26045 * 25 24 23 44 44 H 1.07994 * 127.04505 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.58578 * 66.43371 * 28 19 18 46 46 H 1.09000 * 109.58620 * 186.85889 * 28 19 18 47 47 H 1.09006 * 110.06310 * 61.67653 * 29 9 7 48 48 H 1.09000 * 109.84718 * 300.42167 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4023 -3.9323 -0.6112 12 6 0.7782 -4.7524 -0.0269 13 1 0.5452 -5.1006 0.9794 14 6 1.1223 -5.9313 -0.9393 15 1 1.3626 -5.5622 -1.9364 16 6 -0.0754 -6.8806 -1.0211 17 6 0.2560 -8.0432 -1.9595 18 6 1.4503 -8.8177 -1.4051 19 7 2.5637 -7.8852 -1.1824 20 6 3.7769 -8.1236 -1.7190 21 8 4.6866 -7.3436 -1.5320 22 6 4.0030 -9.3594 -2.5512 23 7 5.3924 -9.3884 -3.0150 24 7 5.8062 -8.8676 -4.1155 25 6 7.0995 -9.0742 -4.2197 26 6 7.4678 -9.7799 -3.0719 27 7 6.3644 -9.9375 -2.3766 28 6 2.3279 -6.6848 -0.3687 29 6 1.9336 -3.7299 0.0032 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5999 -1.7589 -0.6147 32 1 -0.5267 -2.4868 1.0192 33 1 -0.3534 -3.8982 -1.6995 34 1 -1.3594 -4.3331 -0.2775 35 1 -0.2997 -7.2686 -0.0274 36 1 -0.9414 -6.3405 -1.4040 37 1 -0.6057 -8.7064 -2.0355 38 1 0.5045 -7.6542 -2.9469 39 1 1.7519 -9.5827 -2.1204 40 1 1.1720 -9.2864 -0.4612 41 1 3.3329 -9.3462 -3.4108 42 1 3.8030 -10.2452 -1.9483 43 1 7.7461 -8.7586 -5.0251 44 1 8.4570 -10.1252 -2.8099 45 1 2.1225 -6.9761 0.6614 46 1 3.2083 -6.0430 -0.4006 47 1 2.5280 -3.8685 0.9063 48 1 2.5616 -3.8540 -0.8790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961179616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:43 Heat of formation + Delta-G solvation = 105.304459 kcal Electronic energy + Delta-G solvation = -29087.399129 eV Core-core repulsion = 25180.949063 eV Total energy + Delta-G solvation = -3906.450066 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.72406 -40.53645 -38.43420 -36.77902 -34.22084 -33.59675 -32.58553 -32.37459 -31.24618 -29.33464 -28.57274 -27.10137 -25.42633 -24.64088 -23.07250 -22.86805 -22.31647 -20.96068 -19.99946 -19.44188 -19.35026 -18.07429 -17.57924 -16.83369 -16.26431 -16.06024 -15.65190 -15.24109 -14.89780 -14.64846 -14.59076 -14.51374 -13.97631 -13.87844 -13.52141 -13.49347 -13.14051 -12.63805 -12.56861 -12.26658 -11.84226 -11.81703 -11.58082 -11.28913 -11.11443 -11.06451 -10.97699 -10.87433 -10.78038 -10.70062 -10.49031 -10.44042 -10.07308 -10.02494 -9.79238 -9.73789 -9.49898 -9.40450 -8.84921 -8.60886 -6.77661 -5.61027 -3.01906 1.51786 1.92039 2.20990 2.33481 2.74139 3.42776 3.48524 3.51203 3.90631 3.91864 4.37019 4.45506 4.53526 4.55980 4.66269 4.72614 4.85866 4.89355 5.05550 5.08452 5.17304 5.34641 5.47110 5.48928 5.56272 5.61347 5.64613 5.76135 5.79104 5.84973 5.90756 5.98276 5.99040 6.03745 6.19131 6.23669 6.38248 6.42542 6.44882 6.62954 6.65790 6.80974 7.01092 7.04455 7.56094 7.68740 7.78700 7.89865 8.13520 8.41113 9.27514 9.88202 10.53511 11.43071 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002755 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.559603 B =10161.373062 C =11813.269499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.014 4.014 3 Si 0.913 3.087 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.218 4.218 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.151 3.849 11 C -0.135 4.135 12 C -0.092 4.092 13 H 0.070 0.930 14 C -0.087 4.087 15 H 0.075 0.925 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.103 3.897 19 N -0.605 5.605 20 C 0.501 3.499 21 O -0.516 6.516 22 C 0.125 3.875 23 N -0.146 5.146 24 N -0.280 5.280 25 C -0.024 4.024 26 C -0.024 4.024 27 N -0.283 5.283 28 C 0.116 3.884 29 C 0.139 3.861 30 H 0.250 0.750 31 H 0.105 0.895 32 H 0.010 0.990 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.198 0.802 44 H 0.198 0.802 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.019 0.981 48 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.108 -25.673 -6.239 26.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.209 4.209 3 Si 0.744 3.256 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.347 4.347 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.027 3.973 11 C -0.174 4.174 12 C -0.112 4.112 13 H 0.089 0.911 14 C -0.107 4.107 15 H 0.094 0.906 16 C -0.152 4.152 17 C -0.175 4.175 18 C -0.020 4.020 19 N -0.339 5.339 20 C 0.286 3.714 21 O -0.390 6.390 22 C 0.000 4.000 23 N -0.046 5.046 24 N -0.121 5.121 25 C -0.207 4.207 26 C -0.208 4.208 27 N -0.123 5.123 28 C -0.005 4.005 29 C 0.013 3.987 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.028 0.972 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.215 0.785 44 H 0.215 0.785 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.037 0.963 48 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 2.262 -25.001 -5.684 25.739 hybrid contribution 1.343 0.846 -0.189 1.599 sum 3.606 -24.155 -5.873 25.119 Atomic orbital electron populations 1.69816 1.04865 1.24517 1.58120 1.24775 0.95736 0.97674 1.02692 0.86006 0.78734 0.83660 0.77205 1.20515 1.21763 1.21794 1.19157 0.90570 0.82563 1.42406 0.90520 1.44595 1.01973 0.99771 1.86773 1.21916 0.84684 0.92703 0.98034 1.23021 0.95752 0.98728 0.99893 1.22140 0.97538 0.93542 0.97957 0.91115 1.21521 0.93858 0.94934 1.00341 0.90636 1.21587 0.98500 0.95636 0.99504 1.21870 0.97295 0.98203 1.00083 1.21778 0.87205 0.91531 1.01483 1.48088 1.09274 1.24910 1.51625 1.20393 0.83152 0.87262 0.80630 1.90820 1.41789 1.47312 1.59128 1.21742 0.76790 1.00010 1.01426 1.47333 1.08275 1.37286 1.11656 1.74064 1.14678 1.17088 1.06223 1.24808 0.91283 1.03044 1.01598 1.24787 0.98290 1.03825 0.93859 1.74030 0.96522 1.17912 1.23870 1.21843 1.00057 0.85293 0.93314 1.21398 0.93682 0.85917 0.97677 0.93889 0.87729 0.97233 0.92301 0.92544 0.91727 0.90857 0.90413 0.91293 0.90272 0.90545 0.84609 0.84663 0.78473 0.78499 0.91119 0.88477 0.96320 0.95889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.52 10.09 55.49 0.56 -26.96 16 2 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 3 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 N -0.61 -16.03 3.40 -169.84 -0.58 -16.61 16 10 C 0.15 3.73 5.89 -2.53 -0.01 3.71 16 11 C -0.14 -2.49 5.50 -24.58 -0.14 -2.63 16 12 C -0.09 -1.54 2.48 -88.79 -0.22 -1.76 16 13 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 14 C -0.09 -1.15 1.72 -90.50 -0.16 -1.30 16 15 H 0.08 1.15 8.12 -51.93 -0.42 0.72 16 16 C -0.11 -1.13 5.00 -26.69 -0.13 -1.26 16 17 C -0.14 -0.97 6.06 -26.83 -0.16 -1.13 16 18 C 0.10 0.65 6.31 -3.93 -0.02 0.63 16 19 N -0.60 -6.40 2.98 -173.03 -0.52 -6.91 16 20 C 0.50 6.30 7.77 -10.99 -0.09 6.21 16 21 O -0.52 -9.27 15.84 5.56 0.09 -9.18 16 22 C 0.12 1.10 5.37 -5.19 -0.03 1.08 16 23 N -0.15 -1.79 3.44 -11.66 -0.04 -1.83 16 24 N -0.28 -3.60 12.05 30.68 0.37 -3.23 16 25 C -0.02 -0.24 12.20 -17.21 -0.21 -0.45 16 26 C -0.02 -0.24 12.20 -17.21 -0.21 -0.45 16 27 N -0.28 -3.52 12.05 30.67 0.37 -3.15 16 28 C 0.12 1.50 5.44 -3.71 -0.02 1.48 16 29 C 0.14 3.00 6.04 -2.90 -0.02 2.98 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.11 2.90 5.87 -51.93 -0.31 2.60 16 32 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 1.09 8.05 -51.93 -0.42 0.67 16 34 H 0.06 0.90 8.08 -51.93 -0.42 0.48 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.76 7.28 -51.93 -0.38 0.38 16 37 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.27 5.93 -51.93 -0.31 -0.04 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.14 0.81 7.68 -51.93 -0.40 0.42 16 42 H 0.14 0.75 7.95 -51.93 -0.41 0.33 16 43 H 0.20 1.23 8.06 -52.48 -0.42 0.81 16 44 H 0.20 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 46 H 0.10 1.57 6.37 -51.93 -0.33 1.24 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.02 0.52 7.68 -51.93 -0.40 0.12 16 LS Contribution 378.86 15.07 5.71 5.71 Total: -1.00 -37.85 378.86 -8.29 -46.14 By element: Atomic # 1 Polarization: 5.73 SS G_CDS: -7.57 Total: -1.84 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.67 Total: 0.12 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.17 Total: -58.69 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.85 -8.29 -46.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.444 kcal (2) G-P(sol) polarization free energy of solvation -37.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds