Wall clock time and date at job start Tue Mar 31 2020 18:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48510 * 109.46821 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47392 * 299.99687 * 3 2 1 6 6 H 1.48495 * 109.47288 * 60.00196 * 3 2 1 7 7 C 1.38811 * 119.99841 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00008 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99957 * 359.97438 * 7 2 1 10 10 C 1.47426 * 125.64970 * 359.97438 * 9 7 2 11 11 C 1.54908 * 104.83476 * 155.90799 * 10 9 7 12 12 C 1.55157 * 101.57847 * 37.01147 * 11 10 9 13 13 H 1.08998 * 110.72638 * 83.03908 * 12 11 10 14 14 C 1.53000 * 110.72101 * 206.13507 * 12 11 10 15 15 H 1.09006 * 109.52228 * 57.47483 * 14 12 11 16 16 C 1.53039 * 109.49944 * 297.39876 * 14 12 11 17 17 C 1.53040 * 109.54187 * 178.68142 * 16 14 12 18 18 C 1.52758 * 109.38409 * 61.23765 * 17 16 14 19 19 N 1.46928 * 109.01028 * 305.59315 * 18 17 16 20 20 C 1.34776 * 120.62915 * 233.58581 * 19 18 17 21 21 O 1.21282 * 120.00017 * 179.71847 * 20 19 18 22 22 C 1.50698 * 120.00219 * 359.71226 * 20 19 18 23 23 N 1.46501 * 109.47578 * 180.02562 * 22 20 19 24 24 N 1.28593 * 124.62039 * 270.04680 * 23 22 20 25 25 C 1.31382 * 108.71834 * 179.97438 * 24 23 22 26 26 C 1.39675 * 105.89780 * 359.97438 * 25 24 23 27 27 N 1.28602 * 124.61405 * 90.00024 * 23 22 20 28 28 C 1.46925 * 118.73954 * 53.30338 * 19 18 17 29 29 C 1.47318 * 125.61719 * 180.20354 * 9 7 2 30 30 H 0.97004 * 120.00165 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.36875 * 37.07145 * 10 9 7 32 32 H 1.08998 * 110.36677 * 274.74811 * 10 9 7 33 33 H 1.08996 * 111.00811 * 278.93955 * 11 10 9 34 34 H 1.09003 * 111.03931 * 155.09511 * 11 10 9 35 35 H 1.09004 * 109.45990 * 298.70338 * 16 14 12 36 36 H 1.09006 * 109.46052 * 58.67000 * 16 14 12 37 37 H 1.09000 * 109.49785 * 181.31520 * 17 16 14 38 38 H 1.08998 * 109.49716 * 301.41051 * 17 16 14 39 39 H 1.08991 * 109.51390 * 185.70589 * 18 17 16 40 40 H 1.09004 * 109.43094 * 65.42136 * 18 17 16 41 41 H 1.09002 * 109.46966 * 60.00218 * 22 20 19 42 42 H 1.08999 * 109.47246 * 300.01050 * 22 20 19 43 43 H 1.08005 * 127.04646 * 180.26045 * 25 24 23 44 44 H 1.07994 * 127.04505 * 180.02562 * 26 25 24 45 45 H 1.09000 * 109.58578 * 66.43371 * 28 19 18 46 46 H 1.09000 * 109.58620 * 186.85889 * 28 19 18 47 47 H 1.09006 * 110.06310 * 61.67653 * 29 9 7 48 48 H 1.09000 * 109.84718 * 300.42167 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0001 9 7 1.3255 -2.3881 -0.0005 10 6 -0.1416 -2.5331 0.0005 11 6 -0.4023 -3.9323 -0.6112 12 6 0.7782 -4.7524 -0.0269 13 1 0.5452 -5.1006 0.9794 14 6 1.1223 -5.9313 -0.9393 15 1 1.3626 -5.5622 -1.9364 16 6 -0.0754 -6.8806 -1.0211 17 6 0.2560 -8.0432 -1.9595 18 6 1.4503 -8.8177 -1.4051 19 7 2.5637 -7.8852 -1.1824 20 6 3.7769 -8.1236 -1.7190 21 8 4.6866 -7.3436 -1.5320 22 6 4.0030 -9.3594 -2.5512 23 7 5.3924 -9.3884 -3.0150 24 7 5.8062 -8.8676 -4.1155 25 6 7.0995 -9.0742 -4.2197 26 6 7.4678 -9.7799 -3.0719 27 7 6.3644 -9.9375 -2.3766 28 6 2.3279 -6.6848 -0.3687 29 6 1.9336 -3.7299 0.0032 30 1 -0.4850 0.8401 -0.0004 31 1 -0.5999 -1.7589 -0.6147 32 1 -0.5267 -2.4868 1.0192 33 1 -0.3534 -3.8982 -1.6995 34 1 -1.3594 -4.3331 -0.2775 35 1 -0.2997 -7.2686 -0.0274 36 1 -0.9414 -6.3405 -1.4040 37 1 -0.6057 -8.7064 -2.0355 38 1 0.5045 -7.6542 -2.9469 39 1 1.7519 -9.5827 -2.1204 40 1 1.1720 -9.2864 -0.4612 41 1 3.3329 -9.3462 -3.4108 42 1 3.8030 -10.2452 -1.9483 43 1 7.7461 -8.7586 -5.0251 44 1 8.4570 -10.1252 -2.8099 45 1 2.1225 -6.9761 0.6614 46 1 3.2083 -6.0430 -0.4006 47 1 2.5280 -3.8685 0.9063 48 1 2.5616 -3.8540 -0.8790 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961179616.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:42 Heat of formation + Delta-G solvation = 78.489183 kcal Electronic energy + Delta-G solvation = -29088.561926 eV Core-core repulsion = 25180.949063 eV Total energy + Delta-G solvation = -3907.612864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.49264 -41.46418 -39.76244 -38.09159 -35.40594 -34.73328 -33.64415 -33.39592 -32.51995 -31.00219 -29.63256 -28.55795 -26.63188 -26.16382 -23.99918 -23.82682 -23.17403 -22.05191 -21.74249 -20.81887 -20.23342 -19.00478 -18.77687 -18.37913 -17.23083 -16.95723 -16.80939 -16.55436 -16.25720 -15.78055 -15.65176 -15.41592 -15.25012 -15.02274 -14.64458 -14.27494 -14.24493 -14.05985 -13.75263 -13.44208 -13.42277 -13.26594 -12.95328 -12.78768 -12.58627 -12.31377 -12.17056 -12.05886 -11.93075 -11.83564 -11.80925 -11.72954 -11.53080 -11.33702 -11.32815 -11.21340 -11.06636 -10.79070 -10.24587 -9.74494 -8.92869 -7.82439 -5.26852 0.71369 1.24464 1.32367 1.41173 1.42433 1.53206 1.60814 1.93908 2.44899 3.20084 3.25945 3.28249 3.59976 3.66029 3.77085 3.86541 3.93867 3.99190 4.10105 4.14833 4.16876 4.21987 4.28351 4.42845 4.53810 4.57656 4.62899 4.66229 4.77306 4.80530 4.85824 4.90352 4.97921 5.04943 5.07944 5.16981 5.17363 5.33515 5.35543 5.38304 5.42080 5.45941 5.54057 5.66036 5.67064 5.79508 6.22353 6.28130 6.90907 7.07586 7.35249 7.74297 8.38079 9.19251 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.013559 B = 0.002755 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.559603 B =10161.373062 C =11813.269499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.065 4.065 3 Si 0.980 3.020 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.629 5.629 10 C 0.150 3.850 11 C -0.116 4.116 12 C -0.076 4.076 13 H 0.087 0.913 14 C -0.074 4.074 15 H 0.050 0.950 16 C -0.112 4.112 17 C -0.131 4.131 18 C 0.095 3.905 19 N -0.598 5.598 20 C 0.494 3.506 21 O -0.585 6.585 22 C 0.124 3.876 23 N -0.158 5.158 24 N -0.315 5.315 25 C -0.027 4.027 26 C -0.025 4.025 27 N -0.311 5.311 28 C 0.120 3.880 29 C 0.136 3.864 30 H 0.248 0.752 31 H 0.070 0.930 32 H -0.012 1.012 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.111 0.889 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.167 0.833 42 H 0.173 0.827 43 H 0.229 0.771 44 H 0.232 0.768 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.012 0.988 48 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.358 -28.835 -6.776 29.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.213 1.213 6 H -0.214 1.214 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.026 3.974 11 C -0.154 4.154 12 C -0.095 4.095 13 H 0.106 0.894 14 C -0.094 4.094 15 H 0.068 0.932 16 C -0.150 4.150 17 C -0.169 4.169 18 C -0.026 4.026 19 N -0.330 5.330 20 C 0.281 3.719 21 O -0.464 6.464 22 C 0.001 3.999 23 N -0.058 5.058 24 N -0.156 5.156 25 C -0.210 4.210 26 C -0.208 4.208 27 N -0.152 5.152 28 C -0.003 4.003 29 C 0.011 3.989 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.006 0.994 33 H 0.075 0.925 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.077 0.923 39 H 0.134 0.866 40 H 0.118 0.882 41 H 0.184 0.816 42 H 0.190 0.810 43 H 0.246 0.754 44 H 0.248 0.752 45 H 0.104 0.896 46 H 0.072 0.928 47 H 0.030 0.970 48 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.463 -28.219 -6.226 28.935 hybrid contribution 1.620 1.859 -0.006 2.466 sum 3.083 -26.360 -6.232 27.262 Atomic orbital electron populations 1.70063 1.06048 1.25036 1.58477 1.25625 0.96753 1.00871 1.02541 0.84987 0.77830 0.79273 0.77103 1.19694 1.21335 1.21380 1.19455 0.90761 0.84240 1.42868 0.91136 1.44943 1.03103 1.00779 1.86704 1.21767 0.83581 0.95560 0.96541 1.22837 0.98072 0.95064 0.99431 1.22062 0.94376 0.93345 0.99730 0.89447 1.21351 0.95899 0.94369 0.97765 0.93150 1.21593 0.96146 0.95787 1.01427 1.21870 0.98792 0.97602 0.98656 1.22220 0.85336 0.91197 1.03846 1.48183 1.10099 1.24463 1.50300 1.21144 0.82738 0.87764 0.80260 1.90787 1.44066 1.49839 1.61723 1.22089 0.76335 0.99045 1.02417 1.47628 1.09128 1.37507 1.11564 1.74015 1.16177 1.18176 1.07190 1.25449 0.90917 1.02188 1.02465 1.25449 0.99118 1.02951 0.93297 1.73982 0.97495 1.18908 1.24767 1.21588 0.97981 0.86077 0.94668 1.21548 0.95409 0.85500 0.96469 0.94170 0.91184 0.99400 0.92461 0.88948 0.89992 0.91018 0.87032 0.92280 0.86554 0.88220 0.81605 0.80982 0.75442 0.75198 0.89581 0.92825 0.96992 0.97431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.28 10.09 21.65 0.22 -58.07 16 2 C -0.07 -3.90 5.49 84.86 0.47 -3.43 16 3 Si 0.98 47.98 29.55 68.60 2.03 50.01 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 5 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 6 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 7 C -0.24 -14.77 10.28 84.03 0.86 -13.90 16 8 H 0.07 4.21 7.83 -2.91 -0.02 4.18 16 9 N -0.63 -34.86 3.40 -691.24 -2.35 -37.21 16 10 C 0.15 7.65 5.89 86.85 0.51 8.17 16 11 C -0.12 -4.20 5.50 31.99 0.18 -4.03 16 12 C -0.08 -2.51 2.48 -9.61 -0.02 -2.53 16 13 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 14 C -0.07 -1.90 1.72 -10.72 -0.02 -1.91 16 15 H 0.05 1.55 8.12 -2.38 -0.02 1.53 16 16 C -0.11 -1.81 5.00 30.62 0.15 -1.66 16 17 C -0.13 -1.29 6.06 30.53 0.19 -1.10 16 18 C 0.09 0.78 6.31 86.22 0.54 1.32 16 19 N -0.60 -11.64 2.98 -819.75 -2.44 -14.08 16 20 C 0.49 12.15 7.77 87.66 0.68 12.83 16 21 O -0.58 -22.00 15.84 -3.04 -0.05 -22.04 16 22 C 0.12 1.93 5.37 85.63 0.46 2.39 16 23 N -0.16 -3.72 3.44 -190.81 -0.66 -4.38 16 24 N -0.32 -7.90 12.05 -56.86 -0.69 -8.58 16 25 C -0.03 -0.52 12.20 85.11 1.04 0.52 16 26 C -0.03 -0.47 12.20 85.11 1.04 0.57 16 27 N -0.31 -7.45 12.05 -56.87 -0.69 -8.13 16 28 C 0.12 3.06 5.44 86.36 0.47 3.53 16 29 C 0.14 6.15 6.04 86.67 0.52 6.67 16 30 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.07 4.06 5.87 -2.39 -0.01 4.05 16 32 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 33 H 0.06 2.10 8.05 -2.39 -0.02 2.08 16 34 H 0.09 2.73 8.08 -2.39 -0.02 2.71 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.23 7.28 -2.38 -0.02 1.21 16 37 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.15 5.93 -2.39 -0.01 0.13 16 40 H 0.10 0.48 8.14 -2.38 -0.02 0.46 16 41 H 0.17 1.45 7.68 -2.39 -0.02 1.43 16 42 H 0.17 1.26 7.95 -2.39 -0.02 1.24 16 43 H 0.23 2.44 8.06 -2.91 -0.02 2.41 16 44 H 0.23 2.20 8.06 -2.91 -0.02 2.18 16 45 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.05 1.86 6.37 -2.39 -0.02 1.84 16 47 H 0.01 0.55 8.14 -2.38 -0.02 0.54 16 48 H 0.01 0.37 7.68 -2.39 -0.02 0.35 16 Total: -1.00 -90.41 378.86 3.39 -87.01 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 0.95 Total: 8.05 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: 7.07 Total: 7.42 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -6.60 Total: -130.45 kcal Atomic # 8 Polarization: -22.00 SS G_CDS: -0.05 Total: -22.04 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.01 kcal Total: -90.41 3.39 -87.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961179616.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.504 kcal (2) G-P(sol) polarization free energy of solvation -90.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds