Wall clock time and date at job start Tue Mar 31 2020 18:14:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48497 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47343 * 299.99892 * 3 2 1 6 6 H 1.48504 * 109.47071 * 60.00230 * 3 2 1 7 7 C 1.38814 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99864 * 161.42774 * 7 2 1 9 9 N 1.36940 * 119.99838 * 341.70132 * 7 2 1 10 10 C 1.46922 * 120.63013 * 326.51569 * 9 7 2 11 11 C 1.52760 * 109.00861 * 233.58336 * 10 9 7 12 12 C 1.53039 * 109.38488 * 305.58740 * 11 10 9 13 13 C 1.53049 * 109.53331 * 61.24114 * 12 11 10 14 14 H 1.09004 * 109.51968 * 58.60127 * 13 12 11 15 15 C 1.52996 * 109.49623 * 178.67912 * 13 12 11 16 16 C 1.53040 * 109.46467 * 299.86784 * 15 13 12 17 17 C 1.53189 * 109.31613 * 178.59955 * 16 15 13 18 18 N 1.46928 * 108.76395 * 54.65596 * 17 16 15 19 19 C 1.34776 * 120.63400 * 126.40816 * 18 17 16 20 20 O 1.21623 * 119.99630 * 0.05406 * 19 18 17 21 21 C 1.47229 * 120.00359 * 180.02562 * 19 18 17 22 22 C 1.37003 * 127.18921 * 155.36632 * 21 19 18 23 23 N 1.33325 * 106.37106 * 179.97438 * 22 21 19 24 24 N 1.28512 * 109.44036 * 359.97438 * 23 22 21 25 25 N 1.28723 * 110.63571 * 359.75457 * 24 23 22 26 26 H 0.97000 * 126.03457 * 180.26003 * 25 24 23 27 27 C 1.46930 * 118.73731 * 306.38416 * 18 17 16 28 28 C 1.53040 * 109.46325 * 179.81107 * 15 13 12 29 29 C 1.46921 * 120.62744 * 146.79750 * 9 7 2 30 30 H 0.97008 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58941 * 353.42260 * 10 9 7 32 32 H 1.09009 * 109.58546 * 113.84790 * 10 9 7 33 33 H 1.09004 * 109.56411 * 185.55494 * 11 10 9 34 34 H 1.08996 * 109.38948 * 65.52303 * 11 10 9 35 35 H 1.08994 * 109.46294 * 301.22280 * 12 11 10 36 36 H 1.09003 * 109.45905 * 181.25912 * 12 11 10 37 37 H 1.09010 * 109.45934 * 59.83776 * 15 13 12 38 38 H 1.08994 * 109.49817 * 298.56812 * 16 15 13 39 39 H 1.09004 * 109.49587 * 58.66006 * 16 15 13 40 40 H 1.09004 * 109.59959 * 294.86861 * 17 16 15 41 41 H 1.08994 * 109.70323 * 174.50581 * 17 16 15 42 42 H 1.08002 * 126.81701 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.58660 * 293.82028 * 27 18 17 44 44 H 1.09001 * 109.58541 * 173.40053 * 27 18 17 45 45 H 1.09006 * 109.49402 * 301.34556 * 28 15 13 46 46 H 1.09000 * 109.49131 * 61.43329 * 28 15 13 47 47 H 1.08996 * 109.59112 * 246.15534 * 29 9 7 48 48 H 1.08996 * 109.58807 * 6.58646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0480 -1.2267 -0.2973 9 7 1.3773 -2.3579 0.3734 10 6 0.3310 -2.3392 1.4047 11 6 0.6826 -3.3566 2.4887 12 6 0.9072 -4.7270 1.8455 13 6 2.0758 -4.6446 0.8606 14 1 2.9728 -4.3169 1.3862 15 6 2.3208 -6.0226 0.2426 16 6 2.6594 -7.0247 1.3487 17 6 2.8696 -8.4103 0.7302 18 7 3.8885 -8.3079 -0.3234 19 6 4.9695 -9.1128 -0.3140 20 8 5.1081 -9.9345 0.5719 21 6 5.9823 -8.9979 -1.3765 22 6 7.3028 -9.3556 -1.3039 23 7 7.8339 -9.0755 -2.4943 24 7 6.9286 -8.5815 -3.2611 25 7 5.7994 -8.5169 -2.6465 26 1 4.9667 -8.1842 -3.0163 27 6 3.7064 -7.3116 -1.3879 28 6 3.4864 -5.9384 -0.7456 29 6 1.7361 -3.6410 -0.2459 30 1 -0.4850 0.8402 0.0004 31 1 0.2700 -1.3442 1.8453 32 1 -0.6276 -2.6025 0.9575 33 1 -0.1346 -3.4215 3.2071 34 1 1.5921 -3.0410 2.9998 35 1 0.0054 -5.0310 1.3143 36 1 1.1362 -5.4586 2.6204 37 1 1.4231 -6.3503 -0.2818 38 1 3.5709 -6.7109 1.8573 39 1 1.8388 -7.0669 2.0650 40 1 1.9330 -8.7644 0.2996 41 1 3.2060 -9.1079 1.4971 42 1 7.8124 -9.7802 -0.4517 43 1 2.8380 -7.5761 -1.9912 44 1 4.5959 -7.2824 -2.0172 45 1 3.2545 -5.2073 -1.5201 46 1 4.3901 -5.6349 -0.2170 47 1 0.8946 -4.0127 -0.8304 48 1 2.6019 -3.5047 -0.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961385973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:21 Heat of formation + Delta-G solvation = 88.507620 kcal Electronic energy + Delta-G solvation = -29430.935505 eV Core-core repulsion = 25523.757074 eV Total energy + Delta-G solvation = -3907.178432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.83253 -40.54504 -38.71771 -36.99956 -34.67660 -33.77319 -32.46436 -32.09720 -31.19039 -30.37689 -29.38869 -26.00163 -25.43909 -24.19308 -24.00607 -23.05073 -21.96953 -21.71317 -21.09235 -20.00295 -19.17768 -18.39742 -17.45422 -16.78033 -16.74395 -16.48418 -15.49106 -14.98705 -14.77934 -14.65629 -14.46523 -14.21862 -14.00982 -13.91242 -13.47552 -13.27055 -13.05152 -12.74681 -12.56579 -12.54306 -12.24607 -11.96807 -11.68832 -11.50248 -11.38842 -11.07302 -11.06864 -10.88694 -10.83551 -10.65775 -10.42668 -10.33116 -10.21205 -10.18696 -9.95468 -9.92546 -9.54799 -9.34160 -9.09251 -8.51162 -6.64492 -5.84819 -3.31210 0.51421 1.88170 1.98867 2.32417 2.66444 3.32338 3.41125 3.43108 3.68052 4.14214 4.17077 4.43156 4.54674 4.56903 4.66997 4.73547 4.77576 4.92038 4.95922 5.19504 5.29743 5.34467 5.43737 5.51332 5.52362 5.57749 5.61463 5.68241 5.76045 5.84022 5.92423 6.02080 6.11549 6.11878 6.17386 6.31644 6.35511 6.38284 6.57883 6.64435 6.76126 6.78827 6.83695 6.96349 7.30521 7.50768 7.54746 7.76519 7.87051 8.42832 9.16545 9.79404 10.39617 11.23079 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002805 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.612510 B = 9980.835596 C =11291.636805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.010 3.990 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.590 5.590 10 C 0.174 3.826 11 C -0.143 4.143 12 C -0.103 4.103 13 C -0.098 4.098 14 H 0.066 0.934 15 C -0.079 4.079 16 C -0.131 4.131 17 C 0.113 3.887 18 N -0.601 5.601 19 C 0.595 3.405 20 O -0.517 6.517 21 C -0.061 4.061 22 C 0.030 3.970 23 N -0.268 5.268 24 N -0.050 5.050 25 N -0.379 5.379 26 H 0.454 0.546 27 C 0.086 3.914 28 C -0.131 4.131 29 C 0.154 3.846 30 H 0.253 0.747 31 H 0.072 0.928 32 H 0.018 0.982 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.204 0.796 43 H 0.083 0.917 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.015 0.985 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 -18.190 -0.881 18.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.190 4.190 3 Si 0.727 3.273 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.312 5.312 10 C 0.048 3.952 11 C -0.182 4.182 12 C -0.140 4.140 13 C -0.118 4.118 14 H 0.084 0.916 15 C -0.098 4.098 16 C -0.169 4.169 17 C -0.008 4.008 18 N -0.334 5.334 19 C 0.380 3.620 20 O -0.391 6.391 21 C -0.195 4.195 22 C -0.130 4.130 23 N -0.133 5.133 24 N -0.031 5.031 25 N -0.112 5.112 26 H 0.309 0.691 27 C -0.037 4.037 28 C -0.169 4.169 29 C 0.027 3.973 30 H 0.063 0.937 31 H 0.090 0.910 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.114 0.886 42 H 0.221 0.779 43 H 0.102 0.898 44 H 0.092 0.908 45 H 0.108 0.892 46 H 0.089 0.911 47 H 0.032 0.968 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.040 -18.256 -1.678 19.302 hybrid contribution -0.774 1.094 0.687 1.506 sum 5.266 -17.162 -0.992 17.979 Atomic orbital electron populations 1.70075 1.05393 1.25507 1.52923 1.25145 0.95161 0.98573 1.00150 0.86316 0.79586 0.84070 0.77336 1.20158 1.21646 1.21485 1.19116 0.92809 0.85060 1.41944 0.92085 1.43948 1.43757 1.02289 1.41208 1.20573 0.90134 0.97077 0.87415 1.22103 1.00316 0.96506 0.99297 1.21469 0.97768 0.97214 0.97582 1.21695 0.98541 0.93411 0.98171 0.91587 1.21153 0.97310 0.96006 0.95318 1.22062 1.02795 0.93505 0.98563 1.21786 0.90107 0.98856 0.90036 1.48082 1.22126 1.35512 1.27680 1.16826 0.80020 0.81347 0.83847 1.90864 1.75809 1.35956 1.36519 1.22331 0.98702 1.10301 0.88174 1.23915 0.90286 1.00940 0.97811 1.75007 1.23204 1.13391 1.01716 1.78239 0.88263 1.15789 1.20858 1.46581 1.12736 1.42404 1.09511 0.69130 1.22323 1.01555 0.89932 0.89929 1.22023 1.00026 0.94668 1.00140 1.20948 0.97270 0.86671 0.92373 0.93682 0.90973 0.96418 0.93426 0.92872 0.92886 0.93505 0.90985 0.91375 0.89812 0.90872 0.88644 0.77947 0.89847 0.90829 0.89248 0.91093 0.96750 0.93003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.57 11.71 55.49 0.65 -24.92 16 2 C 0.01 0.26 4.84 -17.43 -0.08 0.18 16 3 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.26 -6.91 9.50 -15.06 -0.14 -7.06 16 8 H 0.06 1.61 7.90 -52.49 -0.41 1.20 16 9 N -0.59 -14.08 2.96 -172.59 -0.51 -14.59 16 10 C 0.17 3.98 5.26 -3.94 -0.02 3.96 16 11 C -0.14 -2.57 6.06 -26.83 -0.16 -2.73 16 12 C -0.10 -1.53 4.86 -26.69 -0.13 -1.66 16 13 C -0.10 -1.45 1.92 -90.50 -0.17 -1.62 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.08 -0.84 1.74 -90.58 -0.16 -0.99 16 16 C -0.13 -1.24 5.05 -26.61 -0.13 -1.37 16 17 C 0.11 0.97 6.43 -3.71 -0.02 0.94 16 18 N -0.60 -5.21 2.97 -174.11 -0.52 -5.73 16 19 C 0.59 6.15 7.67 -12.61 -0.10 6.05 16 20 O -0.52 -6.82 16.42 5.26 0.09 -6.73 16 21 C -0.06 -0.57 6.56 -82.34 -0.54 -1.11 16 22 C 0.03 0.29 11.95 -17.35 -0.21 0.08 16 23 N -0.27 -3.08 12.35 30.47 0.38 -2.71 16 24 N -0.05 -0.53 13.35 60.35 0.81 0.28 16 25 N -0.38 -3.03 5.84 33.31 0.19 -2.84 16 26 H 0.45 2.24 6.21 -190.32 -1.18 1.06 16 27 C 0.09 0.60 5.68 -3.71 -0.02 0.58 16 28 C -0.13 -1.24 5.05 -26.62 -0.13 -1.37 16 29 C 0.15 2.90 5.27 -3.71 -0.02 2.88 16 30 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.86 6.53 -51.93 -0.34 1.52 16 32 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.05 0.60 6.33 -51.93 -0.33 0.27 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.76 6.34 -51.93 -0.33 0.43 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.89 7.00 -51.93 -0.36 0.53 16 42 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 0.44 3.62 -51.93 -0.19 0.25 16 45 H 0.09 0.89 6.49 -51.93 -0.34 0.55 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.96 6.52 -51.93 -0.34 0.62 16 LS Contribution 367.21 15.07 5.53 5.53 Total: -1.00 -32.18 367.21 -8.49 -40.67 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.03 Total: -1.91 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.05 Total: -3.25 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 1.00 Total: -50.50 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.09 Total: -6.73 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.18 -8.49 -40.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961385973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.176 kcal (2) G-P(sol) polarization free energy of solvation -32.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds