Wall clock time and date at job start Tue Mar 31 2020 18:14:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86802 * 120.00215 * 2 1 4 4 H 1.48497 * 109.46808 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47343 * 299.99892 * 3 2 1 6 6 H 1.48504 * 109.47071 * 60.00230 * 3 2 1 7 7 C 1.38814 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99864 * 161.42774 * 7 2 1 9 9 N 1.36940 * 119.99838 * 341.70132 * 7 2 1 10 10 C 1.46922 * 120.63013 * 326.51569 * 9 7 2 11 11 C 1.52760 * 109.00861 * 233.58336 * 10 9 7 12 12 C 1.53039 * 109.38488 * 305.58740 * 11 10 9 13 13 C 1.53049 * 109.53331 * 61.24114 * 12 11 10 14 14 H 1.09004 * 109.51968 * 58.60127 * 13 12 11 15 15 C 1.52996 * 109.49623 * 178.67912 * 13 12 11 16 16 C 1.53040 * 109.46467 * 299.86784 * 15 13 12 17 17 C 1.53189 * 109.31613 * 178.59955 * 16 15 13 18 18 N 1.46928 * 108.76395 * 54.65596 * 17 16 15 19 19 C 1.34776 * 120.63400 * 126.40816 * 18 17 16 20 20 O 1.21623 * 119.99630 * 0.05406 * 19 18 17 21 21 C 1.47229 * 120.00359 * 180.02562 * 19 18 17 22 22 C 1.37003 * 127.18921 * 155.36632 * 21 19 18 23 23 N 1.33325 * 106.37106 * 179.97438 * 22 21 19 24 24 N 1.28512 * 109.44036 * 359.97438 * 23 22 21 25 25 N 1.28723 * 110.63571 * 359.75457 * 24 23 22 26 26 H 0.97000 * 126.03457 * 180.26003 * 25 24 23 27 27 C 1.46930 * 118.73731 * 306.38416 * 18 17 16 28 28 C 1.53040 * 109.46325 * 179.81107 * 15 13 12 29 29 C 1.46921 * 120.62744 * 146.79750 * 9 7 2 30 30 H 0.97008 * 119.99502 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.58941 * 353.42260 * 10 9 7 32 32 H 1.09009 * 109.58546 * 113.84790 * 10 9 7 33 33 H 1.09004 * 109.56411 * 185.55494 * 11 10 9 34 34 H 1.08996 * 109.38948 * 65.52303 * 11 10 9 35 35 H 1.08994 * 109.46294 * 301.22280 * 12 11 10 36 36 H 1.09003 * 109.45905 * 181.25912 * 12 11 10 37 37 H 1.09010 * 109.45934 * 59.83776 * 15 13 12 38 38 H 1.08994 * 109.49817 * 298.56812 * 16 15 13 39 39 H 1.09004 * 109.49587 * 58.66006 * 16 15 13 40 40 H 1.09004 * 109.59959 * 294.86861 * 17 16 15 41 41 H 1.08994 * 109.70323 * 174.50581 * 17 16 15 42 42 H 1.08002 * 126.81701 * 359.97438 * 22 21 19 43 43 H 1.09000 * 109.58660 * 293.82028 * 27 18 17 44 44 H 1.09001 * 109.58541 * 173.40053 * 27 18 17 45 45 H 1.09006 * 109.49402 * 301.34556 * 28 15 13 46 46 H 1.09000 * 109.49131 * 61.43329 * 28 15 13 47 47 H 1.08996 * 109.59112 * 246.15534 * 29 9 7 48 48 H 1.08996 * 109.58807 * 6.58646 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8916 2.3964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0480 -1.2267 -0.2973 9 7 1.3773 -2.3579 0.3734 10 6 0.3310 -2.3392 1.4047 11 6 0.6826 -3.3566 2.4887 12 6 0.9072 -4.7270 1.8455 13 6 2.0758 -4.6446 0.8606 14 1 2.9728 -4.3169 1.3862 15 6 2.3208 -6.0226 0.2426 16 6 2.6594 -7.0247 1.3487 17 6 2.8696 -8.4103 0.7302 18 7 3.8885 -8.3079 -0.3234 19 6 4.9695 -9.1128 -0.3140 20 8 5.1081 -9.9345 0.5719 21 6 5.9823 -8.9979 -1.3765 22 6 7.3028 -9.3556 -1.3039 23 7 7.8339 -9.0755 -2.4943 24 7 6.9286 -8.5815 -3.2611 25 7 5.7994 -8.5169 -2.6465 26 1 4.9667 -8.1842 -3.0163 27 6 3.7064 -7.3116 -1.3879 28 6 3.4864 -5.9384 -0.7456 29 6 1.7361 -3.6410 -0.2459 30 1 -0.4850 0.8402 0.0004 31 1 0.2700 -1.3442 1.8453 32 1 -0.6276 -2.6025 0.9575 33 1 -0.1346 -3.4215 3.2071 34 1 1.5921 -3.0410 2.9998 35 1 0.0054 -5.0310 1.3143 36 1 1.1362 -5.4586 2.6204 37 1 1.4231 -6.3503 -0.2818 38 1 3.5709 -6.7109 1.8573 39 1 1.8388 -7.0669 2.0650 40 1 1.9330 -8.7644 0.2996 41 1 3.2060 -9.1079 1.4971 42 1 7.8124 -9.7802 -0.4517 43 1 2.8380 -7.5761 -1.9912 44 1 4.5959 -7.2824 -2.0172 45 1 3.2545 -5.2073 -1.5201 46 1 4.3901 -5.6349 -0.2170 47 1 0.8946 -4.0127 -0.8304 48 1 2.6019 -3.5047 -0.8938 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961385973.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:19 Heat of formation + Delta-G solvation = 67.787301 kcal Electronic energy + Delta-G solvation = -29431.834006 eV Core-core repulsion = 25523.757074 eV Total energy + Delta-G solvation = -3908.076932 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.57499 -41.34463 -39.85817 -38.17076 -35.82381 -34.82054 -33.85734 -32.89285 -32.36973 -31.69530 -30.65322 -27.25957 -26.87376 -25.13486 -24.91737 -23.98922 -23.18995 -22.92292 -22.05385 -20.93133 -20.58822 -19.15892 -18.63540 -18.14897 -17.51552 -17.32408 -16.84549 -16.30452 -15.84645 -15.63720 -15.43064 -15.37923 -15.10021 -14.93319 -14.78474 -14.60518 -14.19524 -14.02319 -13.79446 -13.55389 -13.32312 -13.09368 -12.97753 -12.80723 -12.47827 -12.40669 -12.26148 -12.22421 -12.03112 -11.92206 -11.74593 -11.67489 -11.53348 -11.35229 -11.32251 -10.96888 -10.73614 -10.69308 -10.54901 -9.83333 -8.59872 -7.88876 -5.38179 -0.22553 1.11848 1.30739 1.42590 1.45738 1.55415 1.59946 1.95025 2.48954 2.99093 3.24829 3.42719 3.53446 3.61916 3.80969 3.83676 3.88897 4.01378 4.06467 4.15200 4.24852 4.31161 4.36441 4.44474 4.53792 4.60725 4.67957 4.77467 4.82877 4.88306 4.88843 4.94850 4.99911 5.08599 5.13147 5.15883 5.20229 5.31185 5.34722 5.42590 5.47190 5.53867 5.55816 5.61436 5.67626 5.79639 6.05221 6.40717 6.74868 7.11307 7.15636 7.87454 8.41271 9.16052 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015704 B = 0.002805 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.612510 B = 9980.835596 C =11291.636805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.043 4.043 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.266 4.266 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.179 3.821 11 C -0.134 4.134 12 C -0.098 4.098 13 C -0.085 4.085 14 H 0.050 0.950 15 C -0.070 4.070 16 C -0.123 4.123 17 C 0.115 3.885 18 N -0.596 5.596 19 C 0.597 3.403 20 O -0.549 6.549 21 C -0.061 4.061 22 C 0.025 3.975 23 N -0.294 5.294 24 N -0.063 5.063 25 N -0.358 5.358 26 H 0.467 0.533 27 C 0.090 3.910 28 C -0.130 4.130 29 C 0.152 3.848 30 H 0.249 0.751 31 H 0.032 0.968 32 H -0.004 1.004 33 H 0.066 0.934 34 H 0.045 0.955 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.055 0.945 39 H 0.094 0.906 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.219 0.781 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.056 0.944 47 H 0.013 0.987 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.425 -19.951 -0.978 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.240 4.240 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.396 4.396 8 H 0.078 0.922 9 N -0.334 5.334 10 C 0.053 3.947 11 C -0.173 4.173 12 C -0.135 4.135 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.089 4.089 16 C -0.161 4.161 17 C -0.006 4.006 18 N -0.328 5.328 19 C 0.383 3.617 20 O -0.426 6.426 21 C -0.196 4.196 22 C -0.135 4.135 23 N -0.158 5.158 24 N -0.045 5.045 25 N -0.094 5.094 26 H 0.325 0.675 27 C -0.033 4.033 28 C -0.168 4.168 29 C 0.027 3.973 30 H 0.059 0.941 31 H 0.051 0.949 32 H 0.014 0.986 33 H 0.084 0.916 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.107 0.893 42 H 0.236 0.764 43 H 0.132 0.868 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.075 0.925 47 H 0.031 0.969 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.215 -20.023 -1.802 21.043 hybrid contribution -0.862 1.661 0.708 2.001 sum 5.353 -18.361 -1.094 19.157 Atomic orbital electron populations 1.70201 1.06754 1.25814 1.54740 1.25849 0.95870 1.01529 1.00713 0.85348 0.78822 0.80280 0.76846 1.19142 1.21718 1.21773 1.19414 0.92957 0.86455 1.40797 0.92248 1.44240 1.43693 1.03342 1.42095 1.20404 0.89301 0.96543 0.88418 1.21960 1.00510 0.96878 0.97973 1.21461 0.97927 0.95807 0.98328 1.21492 0.97743 0.94623 0.96656 0.93181 1.21060 0.98394 0.93562 0.95878 1.21977 1.02557 0.93497 0.98106 1.21824 0.90816 0.97953 0.90005 1.48143 1.21560 1.35112 1.27954 1.16851 0.80193 0.81177 0.83484 1.90853 1.76515 1.37460 1.37737 1.22236 0.98441 1.10500 0.88399 1.24277 0.90695 1.00635 0.97864 1.74994 1.23977 1.14403 1.02475 1.78188 0.88899 1.16285 1.21136 1.46557 1.12770 1.41238 1.08883 0.67536 1.22416 1.03370 0.87970 0.89509 1.21965 0.98902 0.96160 0.99761 1.21117 0.96962 0.85540 0.93713 0.94149 0.94891 0.98572 0.91555 0.93660 0.92406 0.90186 0.89586 0.92653 0.88792 0.88613 0.89337 0.76402 0.86765 0.89932 0.89667 0.92549 0.96942 0.93057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.72 11.71 21.65 0.25 -54.46 16 2 C -0.04 -2.39 4.84 84.86 0.41 -1.98 16 3 Si 0.96 44.41 29.59 68.60 2.03 46.44 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.27 -14.38 9.50 84.03 0.80 -13.58 16 8 H 0.06 3.17 7.90 -2.91 -0.02 3.14 16 9 N -0.61 -29.54 2.96 -699.95 -2.07 -31.61 16 10 C 0.18 8.39 5.26 86.22 0.45 8.84 16 11 C -0.13 -4.70 6.06 30.53 0.19 -4.52 16 12 C -0.10 -2.67 4.86 30.62 0.15 -2.52 16 13 C -0.09 -2.36 1.92 -10.71 -0.02 -2.38 16 14 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 15 C -0.07 -1.28 1.74 -10.77 -0.02 -1.29 16 16 C -0.12 -1.92 5.05 30.67 0.15 -1.76 16 17 C 0.12 1.57 6.43 86.36 0.56 2.13 16 18 N -0.60 -8.54 2.97 -823.01 -2.45 -10.99 16 19 C 0.60 11.07 7.67 86.61 0.66 11.74 16 20 O -0.55 -13.63 16.42 -4.10 -0.07 -13.69 16 21 C -0.06 -1.03 6.56 40.40 0.27 -0.77 16 22 C 0.02 0.46 11.95 84.18 1.01 1.47 16 23 N -0.29 -6.48 12.35 -57.50 -0.71 -7.19 16 24 N -0.06 -1.26 13.35 37.02 0.49 -0.76 16 25 N -0.36 -4.98 5.84 -48.53 -0.28 -5.26 16 26 H 0.47 3.28 6.21 -219.89 -1.37 1.91 16 27 C 0.09 0.95 5.68 86.36 0.49 1.44 16 28 C -0.13 -2.14 5.05 30.67 0.15 -1.98 16 29 C 0.15 5.63 5.27 86.36 0.46 6.08 16 30 H 0.25 14.19 8.31 -92.70 -0.77 13.42 16 31 H 0.03 1.76 6.53 -2.39 -0.02 1.75 16 32 H 0.00 -0.19 8.14 -2.38 -0.02 -0.21 16 33 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.08 1.72 6.33 -2.39 -0.02 1.70 16 37 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 38 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.31 6.34 -2.38 -0.02 1.29 16 40 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.09 1.42 7.00 -2.39 -0.02 1.40 16 42 H 0.22 3.04 8.06 -2.91 -0.02 3.02 16 43 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.73 3.62 -2.39 -0.01 0.72 16 45 H 0.08 1.51 6.49 -2.38 -0.02 1.49 16 46 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.05 1.87 6.52 -2.39 -0.02 1.86 16 Total: -1.00 -71.95 367.21 2.52 -69.43 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -0.38 Total: 7.20 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.70 Total: 0.90 kcal Atomic # 7 Polarization: -105.51 SS G_CDS: -4.77 Total: -110.27 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: -0.07 Total: -13.69 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -71.95 2.52 -69.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961385973.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.214 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds