Wall clock time and date at job start Tue Mar 31 2020 18:14:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99524 * 2 1 4 4 H 1.48493 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46989 * 300.00566 * 3 2 1 6 6 H 1.48503 * 109.47121 * 59.99879 * 3 2 1 7 7 C 1.38813 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99538 * 197.10235 * 7 2 1 9 9 N 1.36935 * 119.99794 * 17.10257 * 7 2 1 10 10 C 1.46918 * 120.63174 * 35.14041 * 9 7 2 11 11 C 1.53199 * 108.77860 * 126.39024 * 10 9 7 12 12 C 1.53043 * 109.30773 * 54.63180 * 11 10 9 13 13 C 1.53040 * 109.53915 * 298.63841 * 12 11 10 14 14 H 1.09001 * 109.49926 * 301.40887 * 13 12 11 15 15 C 1.53008 * 109.52103 * 181.33589 * 13 12 11 16 16 C 1.53038 * 109.45726 * 180.17433 * 15 13 12 17 17 C 1.53198 * 109.31019 * 178.59907 * 16 15 13 18 18 N 1.46923 * 108.76504 * 54.65541 * 17 16 15 19 19 C 1.34777 * 120.63222 * 126.40445 * 18 17 16 20 20 O 1.21618 * 119.99970 * 180.02562 * 19 18 17 21 21 C 1.47230 * 119.99868 * 0.08383 * 19 18 17 22 22 C 1.37001 * 127.18796 * 204.45294 * 21 19 18 23 23 N 1.33327 * 106.37021 * 179.90158 * 22 21 19 24 24 N 1.28505 * 109.43849 * 0.37604 * 23 22 21 25 25 N 1.28709 * 110.64288 * 359.75797 * 24 23 22 26 26 H 0.97000 * 126.04073 * 179.97438 * 25 24 23 27 27 C 1.46935 * 118.73779 * 306.38256 * 18 17 16 28 28 C 1.53037 * 109.46238 * 60.11575 * 15 13 12 29 29 C 1.46928 * 120.62544 * 215.14014 * 9 7 2 30 30 H 0.96995 * 120.00860 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.58880 * 6.60229 * 10 9 7 32 32 H 1.09001 * 109.70830 * 246.24766 * 10 9 7 33 33 H 1.09003 * 109.49626 * 294.68893 * 11 10 9 34 34 H 1.08994 * 109.50243 * 174.58698 * 11 10 9 35 35 H 1.09002 * 109.45500 * 178.61764 * 12 11 10 36 36 H 1.08996 * 109.44613 * 58.65469 * 12 11 10 37 37 H 1.09008 * 109.45853 * 300.14292 * 15 13 12 38 38 H 1.08996 * 109.49897 * 298.56174 * 16 15 13 39 39 H 1.09005 * 109.50023 * 58.66065 * 16 15 13 40 40 H 1.08997 * 109.59895 * 294.86609 * 17 16 15 41 41 H 1.09001 * 109.58353 * 174.43466 * 17 16 15 42 42 H 1.08001 * 126.81699 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.58424 * 293.82023 * 27 18 17 44 44 H 1.09000 * 109.58298 * 173.39760 * 27 18 17 45 45 H 1.09000 * 109.49812 * 301.33637 * 28 15 13 46 46 H 1.09000 * 109.49727 * 61.43474 * 28 15 13 47 47 H 1.09007 * 109.58413 * 113.82682 * 29 9 7 48 48 H 1.08994 * 109.58812 * 353.39718 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8911 2.3966 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0545 -1.2227 0.2745 9 7 1.3712 -2.3616 -0.3498 10 6 0.3316 -2.3599 -1.3879 11 6 0.6887 -3.4094 -2.4453 12 6 0.8945 -4.7643 -1.7641 13 6 2.0538 -4.6664 -0.7697 14 1 2.9586 -4.3603 -1.2948 15 6 2.2808 -6.0297 -0.1133 16 6 3.4374 -5.9291 0.8839 17 6 3.6390 -7.2866 1.5645 18 7 3.8232 -8.3121 0.5286 19 6 4.8973 -9.1259 0.5512 20 8 5.0386 -9.9705 -0.3124 21 6 5.8989 -8.9933 1.6221 22 6 7.2162 -9.3667 1.5747 23 7 7.7372 -9.0580 2.7625 24 7 6.8271 -8.5396 3.5070 25 7 5.7068 -8.4762 2.8766 26 1 4.8736 -8.1248 3.2275 27 6 2.8139 -8.4338 -0.5323 28 6 2.6214 -7.0633 -1.1892 29 6 1.7121 -3.6312 0.3065 30 1 -0.4851 0.8399 0.0004 31 1 0.2811 -1.3752 -1.8529 32 1 -0.6330 -2.6035 -0.9426 33 1 1.6064 -3.1151 -2.9545 34 1 -0.1217 -3.4860 -3.1701 35 1 1.1247 -5.5180 -2.5171 36 1 -0.0154 -5.0461 -1.2344 37 1 1.3752 -6.3358 0.4107 38 1 4.3488 -5.6473 0.3566 39 1 3.2044 -5.1759 1.6366 40 1 2.7625 -7.5279 2.1658 41 1 4.5225 -7.2482 2.2018 42 1 7.7310 -9.8193 0.7401 43 1 1.8701 -8.7687 -0.1021 44 1 3.1531 -9.1523 -1.2785 45 1 1.8075 -7.1176 -1.9122 46 1 3.5406 -6.7708 -1.6968 47 1 0.8612 -3.9799 0.8919 48 1 2.5725 -3.4854 0.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961385974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:24 Heat of formation + Delta-G solvation = 88.033537 kcal Electronic energy + Delta-G solvation = -29428.747362 eV Core-core repulsion = 25521.548373 eV Total energy + Delta-G solvation = -3907.198989 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.83300 -40.54319 -38.71006 -36.98777 -34.67180 -33.76938 -32.46009 -32.09400 -31.18895 -30.36293 -29.38277 -26.00008 -25.43203 -24.19285 -24.00388 -23.04865 -21.96738 -21.70528 -21.09173 -20.00171 -19.18069 -18.39411 -17.45107 -16.77983 -16.74194 -16.48384 -15.48995 -14.98610 -14.77632 -14.65571 -14.46157 -14.21795 -14.00713 -13.91278 -13.47040 -13.26873 -13.04789 -12.74382 -12.56217 -12.53627 -12.24041 -11.96291 -11.68760 -11.49929 -11.38182 -11.07184 -11.06374 -10.88801 -10.83423 -10.65898 -10.42518 -10.33795 -10.21386 -10.18818 -9.95930 -9.92540 -9.54849 -9.33433 -9.09063 -8.51664 -6.61644 -5.84744 -3.33860 0.51566 1.88521 1.98818 2.32648 2.66656 3.31945 3.40689 3.42692 3.68196 4.14331 4.17218 4.42797 4.54836 4.57084 4.67280 4.73757 4.77696 4.92233 4.96129 5.19817 5.30196 5.34475 5.43884 5.51710 5.52709 5.57930 5.61673 5.68742 5.76364 5.84184 5.92634 6.02372 6.11811 6.12263 6.17662 6.32162 6.35665 6.38435 6.58362 6.64277 6.76372 6.79336 6.83571 6.96883 7.29708 7.50941 7.54480 7.76655 7.87254 8.44294 9.16795 9.78807 10.40309 11.22766 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002807 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.497299 B = 9971.751206 C =11293.999716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.011 3.989 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.260 4.260 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.174 3.826 11 C -0.143 4.143 12 C -0.103 4.103 13 C -0.098 4.098 14 H 0.065 0.935 15 C -0.079 4.079 16 C -0.130 4.130 17 C 0.086 3.914 18 N -0.601 5.601 19 C 0.595 3.405 20 O -0.517 6.517 21 C -0.061 4.061 22 C 0.030 3.970 23 N -0.268 5.268 24 N -0.050 5.050 25 N -0.379 5.379 26 H 0.455 0.545 27 C 0.113 3.887 28 C -0.131 4.131 29 C 0.154 3.846 30 H 0.254 0.746 31 H 0.070 0.930 32 H 0.018 0.982 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.204 0.796 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.014 0.986 48 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -18.137 1.326 18.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.189 4.189 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.312 5.312 10 C 0.049 3.951 11 C -0.182 4.182 12 C -0.140 4.140 13 C -0.118 4.118 14 H 0.084 0.916 15 C -0.098 4.098 16 C -0.169 4.169 17 C -0.037 4.037 18 N -0.334 5.334 19 C 0.380 3.620 20 O -0.392 6.392 21 C -0.195 4.195 22 C -0.129 4.129 23 N -0.133 5.133 24 N -0.031 5.031 25 N -0.112 5.112 26 H 0.309 0.691 27 C -0.008 4.008 28 C -0.169 4.169 29 C 0.027 3.973 30 H 0.063 0.937 31 H 0.089 0.911 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.221 0.779 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.102 0.898 46 H 0.086 0.914 47 H 0.032 0.968 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.866 -18.187 2.135 19.229 hybrid contribution -0.769 1.094 -0.703 1.511 sum 5.097 -17.093 1.431 17.894 Atomic orbital electron populations 1.70050 1.05410 1.25543 1.52871 1.25201 0.95179 0.98603 0.99900 0.86314 0.79591 0.84042 0.77344 1.20133 1.21474 1.21608 1.19098 0.92289 0.84833 1.42812 0.92180 1.43934 1.44192 1.03019 1.40020 1.20650 0.90271 0.96637 0.87587 1.22178 1.00314 0.96633 0.99114 1.21466 0.97830 0.97218 0.97507 1.21694 0.98613 0.93521 0.97979 0.91605 1.21154 0.97389 0.95875 0.95374 1.22024 1.00109 0.94855 0.99862 1.22327 1.01564 0.89355 0.90502 1.48082 1.22866 1.33884 1.28574 1.16824 0.79966 0.81567 0.83674 1.90863 1.75333 1.34911 1.38043 1.22334 0.98814 1.09561 0.88811 1.23916 0.90441 1.00921 0.97670 1.75007 1.22943 1.13021 1.02353 1.78231 0.88503 1.15887 1.20525 1.46588 1.13081 1.41549 1.10016 0.69123 1.21790 0.90341 0.98959 0.89697 1.22064 1.02820 0.93517 0.98536 1.20957 0.97312 0.86703 0.92295 0.93655 0.91141 0.96348 0.92858 0.93465 0.93520 0.92892 0.90987 0.91094 0.89242 0.89843 0.90831 0.77947 0.90856 0.88645 0.89813 0.91380 0.96765 0.92996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.56 11.76 55.49 0.65 -24.90 16 2 C 0.01 0.30 4.86 -17.43 -0.08 0.22 16 3 Si 0.90 21.20 29.59 -169.99 -5.03 16.17 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 7 C -0.26 -6.94 9.49 -15.06 -0.14 -7.08 16 8 H 0.06 1.59 7.89 -52.49 -0.41 1.17 16 9 N -0.59 -14.07 2.95 -172.32 -0.51 -14.58 16 10 C 0.17 3.99 5.28 -3.71 -0.02 3.97 16 11 C -0.14 -2.57 6.08 -26.61 -0.16 -2.73 16 12 C -0.10 -1.53 4.86 -26.69 -0.13 -1.66 16 13 C -0.10 -1.45 1.92 -90.50 -0.17 -1.62 16 14 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 15 C -0.08 -0.84 1.74 -90.58 -0.16 -1.00 16 16 C -0.13 -1.24 5.05 -26.61 -0.13 -1.37 16 17 C 0.09 0.60 5.67 -3.71 -0.02 0.58 16 18 N -0.60 -5.22 2.97 -174.11 -0.52 -5.74 16 19 C 0.59 6.16 7.67 -12.61 -0.10 6.06 16 20 O -0.52 -6.83 16.41 5.26 0.09 -6.74 16 21 C -0.06 -0.58 6.56 -82.33 -0.54 -1.12 16 22 C 0.03 0.29 11.95 -17.35 -0.21 0.09 16 23 N -0.27 -3.09 12.35 30.47 0.38 -2.71 16 24 N -0.05 -0.53 13.35 60.35 0.81 0.28 16 25 N -0.38 -3.04 5.84 33.31 0.19 -2.84 16 26 H 0.45 2.25 6.20 -190.33 -1.18 1.07 16 27 C 0.11 0.97 6.43 -3.71 -0.02 0.95 16 28 C -0.13 -1.24 5.05 -26.62 -0.13 -1.37 16 29 C 0.15 2.91 5.27 -3.71 -0.02 2.89 16 30 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.07 1.82 6.62 -51.93 -0.34 1.47 16 32 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.09 0.89 6.49 -51.93 -0.34 0.55 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.44 3.62 -51.93 -0.19 0.25 16 42 H 0.20 1.52 8.06 -52.49 -0.42 1.10 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.89 7.00 -51.93 -0.36 0.53 16 45 H 0.08 0.76 6.34 -51.93 -0.33 0.43 16 46 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 48 H 0.05 0.96 6.51 -51.93 -0.34 0.62 16 LS Contribution 367.35 15.07 5.54 5.54 Total: -1.00 -32.16 367.35 -8.48 -40.64 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -8.03 Total: -1.89 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -2.05 Total: -3.21 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 1.00 Total: -50.50 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.09 Total: -6.74 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.16 -8.48 -40.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961385974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.673 kcal (2) G-P(sol) polarization free energy of solvation -32.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds