Wall clock time and date at job start Tue Mar 31 2020 18:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86806 * 119.99524 * 2 1 4 4 H 1.48493 * 109.47075 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46989 * 300.00566 * 3 2 1 6 6 H 1.48503 * 109.47121 * 59.99879 * 3 2 1 7 7 C 1.38813 * 120.00583 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99538 * 197.10235 * 7 2 1 9 9 N 1.36935 * 119.99794 * 17.10257 * 7 2 1 10 10 C 1.46918 * 120.63174 * 35.14041 * 9 7 2 11 11 C 1.53199 * 108.77860 * 126.39024 * 10 9 7 12 12 C 1.53043 * 109.30773 * 54.63180 * 11 10 9 13 13 C 1.53040 * 109.53915 * 298.63841 * 12 11 10 14 14 H 1.09001 * 109.49926 * 301.40887 * 13 12 11 15 15 C 1.53008 * 109.52103 * 181.33589 * 13 12 11 16 16 C 1.53038 * 109.45726 * 180.17433 * 15 13 12 17 17 C 1.53198 * 109.31019 * 178.59907 * 16 15 13 18 18 N 1.46923 * 108.76504 * 54.65541 * 17 16 15 19 19 C 1.34777 * 120.63222 * 126.40445 * 18 17 16 20 20 O 1.21618 * 119.99970 * 180.02562 * 19 18 17 21 21 C 1.47230 * 119.99868 * 0.08383 * 19 18 17 22 22 C 1.37001 * 127.18796 * 204.45294 * 21 19 18 23 23 N 1.33327 * 106.37021 * 179.90158 * 22 21 19 24 24 N 1.28505 * 109.43849 * 0.37604 * 23 22 21 25 25 N 1.28709 * 110.64288 * 359.75797 * 24 23 22 26 26 H 0.97000 * 126.04073 * 179.97438 * 25 24 23 27 27 C 1.46935 * 118.73779 * 306.38256 * 18 17 16 28 28 C 1.53037 * 109.46238 * 60.11575 * 15 13 12 29 29 C 1.46928 * 120.62544 * 215.14014 * 9 7 2 30 30 H 0.96995 * 120.00860 * 359.97438 * 1 2 3 31 31 H 1.09007 * 109.58880 * 6.60229 * 10 9 7 32 32 H 1.09001 * 109.70830 * 246.24766 * 10 9 7 33 33 H 1.09003 * 109.49626 * 294.68893 * 11 10 9 34 34 H 1.08994 * 109.50243 * 174.58698 * 11 10 9 35 35 H 1.09002 * 109.45500 * 178.61764 * 12 11 10 36 36 H 1.08996 * 109.44613 * 58.65469 * 12 11 10 37 37 H 1.09008 * 109.45853 * 300.14292 * 15 13 12 38 38 H 1.08996 * 109.49897 * 298.56174 * 16 15 13 39 39 H 1.09005 * 109.50023 * 58.66065 * 16 15 13 40 40 H 1.08997 * 109.59895 * 294.86609 * 17 16 15 41 41 H 1.09001 * 109.58353 * 174.43466 * 17 16 15 42 42 H 1.08001 * 126.81699 * 0.02562 * 22 21 19 43 43 H 1.09000 * 109.58424 * 293.82023 * 27 18 17 44 44 H 1.09000 * 109.58298 * 173.39760 * 27 18 17 45 45 H 1.09000 * 109.49812 * 301.33637 * 28 15 13 46 46 H 1.09000 * 109.49727 * 61.43474 * 28 15 13 47 47 H 1.09007 * 109.58413 * 113.82682 * 29 9 7 48 48 H 1.08994 * 109.58812 * 353.39718 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.7100 1.3466 -0.0006 5 1 1.8911 2.3966 -1.2125 6 1 1.8912 2.3966 1.2125 7 6 2.0104 -1.2021 -0.0005 8 1 3.0545 -1.2227 0.2745 9 7 1.3712 -2.3616 -0.3498 10 6 0.3316 -2.3599 -1.3879 11 6 0.6887 -3.4094 -2.4453 12 6 0.8945 -4.7643 -1.7641 13 6 2.0538 -4.6664 -0.7697 14 1 2.9586 -4.3603 -1.2948 15 6 2.2808 -6.0297 -0.1133 16 6 3.4374 -5.9291 0.8839 17 6 3.6390 -7.2866 1.5645 18 7 3.8232 -8.3121 0.5286 19 6 4.8973 -9.1259 0.5512 20 8 5.0386 -9.9705 -0.3124 21 6 5.8989 -8.9933 1.6221 22 6 7.2162 -9.3667 1.5747 23 7 7.7372 -9.0580 2.7625 24 7 6.8271 -8.5396 3.5070 25 7 5.7068 -8.4762 2.8766 26 1 4.8736 -8.1248 3.2275 27 6 2.8139 -8.4338 -0.5323 28 6 2.6214 -7.0633 -1.1892 29 6 1.7121 -3.6312 0.3065 30 1 -0.4851 0.8399 0.0004 31 1 0.2811 -1.3752 -1.8529 32 1 -0.6330 -2.6035 -0.9426 33 1 1.6064 -3.1151 -2.9545 34 1 -0.1217 -3.4860 -3.1701 35 1 1.1247 -5.5180 -2.5171 36 1 -0.0154 -5.0461 -1.2344 37 1 1.3752 -6.3358 0.4107 38 1 4.3488 -5.6473 0.3566 39 1 3.2044 -5.1759 1.6366 40 1 2.7625 -7.5279 2.1658 41 1 4.5225 -7.2482 2.2018 42 1 7.7310 -9.8193 0.7401 43 1 1.8701 -8.7687 -0.1021 44 1 3.1531 -9.1523 -1.2785 45 1 1.8075 -7.1176 -1.9122 46 1 3.5406 -6.7708 -1.6968 47 1 0.8612 -3.9799 0.8919 48 1 2.5725 -3.4854 0.9596 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961385974.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:23 Heat of formation + Delta-G solvation = 67.345125 kcal Electronic energy + Delta-G solvation = -29429.644479 eV Core-core repulsion = 25521.548373 eV Total energy + Delta-G solvation = -3908.096106 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -44.57666 -41.34382 -39.84892 -38.16178 -35.82055 -34.82015 -33.85291 -32.88998 -32.36397 -31.68960 -30.64794 -27.25717 -26.87239 -25.13407 -24.91733 -23.98726 -23.18723 -22.92052 -22.05478 -20.93305 -20.59022 -19.15651 -18.63337 -18.14797 -17.51619 -17.32596 -16.84778 -16.30424 -15.84391 -15.63200 -15.43113 -15.37879 -15.09893 -14.93122 -14.78323 -14.60272 -14.19374 -14.02118 -13.78919 -13.54732 -13.32249 -13.09199 -12.96987 -12.80976 -12.48239 -12.40870 -12.26557 -12.22518 -12.03420 -11.91972 -11.74924 -11.67927 -11.53062 -11.34903 -11.32227 -10.96800 -10.73224 -10.69327 -10.55762 -9.83290 -8.57273 -7.88520 -5.40914 -0.22529 1.12001 1.30650 1.42444 1.45508 1.55248 1.60054 1.95078 2.48550 2.99088 3.24995 3.42714 3.53423 3.62082 3.81093 3.83819 3.89224 4.01459 4.06595 4.15344 4.24903 4.31203 4.36575 4.44259 4.53957 4.61006 4.68019 4.77117 4.82898 4.88327 4.88886 4.94959 4.99792 5.08697 5.13364 5.16001 5.20285 5.31418 5.34566 5.42917 5.47057 5.53747 5.55519 5.61572 5.67386 5.79628 6.05252 6.41858 6.74908 7.11395 7.15994 7.86966 8.41881 9.15747 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.002807 C = 0.002479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.497299 B = 9971.751206 C =11293.999716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.041 4.041 3 Si 0.959 3.041 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.267 4.267 8 H 0.059 0.941 9 N -0.610 5.610 10 C 0.179 3.821 11 C -0.134 4.134 12 C -0.098 4.098 13 C -0.085 4.085 14 H 0.050 0.950 15 C -0.070 4.070 16 C -0.130 4.130 17 C 0.090 3.910 18 N -0.596 5.596 19 C 0.598 3.402 20 O -0.549 6.549 21 C -0.061 4.061 22 C 0.025 3.975 23 N -0.294 5.294 24 N -0.063 5.063 25 N -0.358 5.358 26 H 0.467 0.533 27 C 0.115 3.885 28 C -0.123 4.123 29 C 0.152 3.848 30 H 0.250 0.750 31 H 0.031 0.969 32 H -0.003 1.003 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.083 0.917 42 H 0.219 0.781 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.055 0.945 47 H 0.012 0.988 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.243 -19.884 1.457 20.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.238 4.238 3 Si 0.787 3.213 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.397 4.397 8 H 0.076 0.924 9 N -0.333 5.333 10 C 0.054 3.946 11 C -0.173 4.173 12 C -0.135 4.135 13 C -0.105 4.105 14 H 0.068 0.932 15 C -0.089 4.089 16 C -0.168 4.168 17 C -0.033 4.033 18 N -0.328 5.328 19 C 0.383 3.617 20 O -0.426 6.426 21 C -0.196 4.196 22 C -0.135 4.135 23 N -0.159 5.159 24 N -0.045 5.045 25 N -0.095 5.095 26 H 0.325 0.675 27 C -0.006 4.006 28 C -0.161 4.161 29 C 0.027 3.973 30 H 0.059 0.941 31 H 0.049 0.951 32 H 0.015 0.985 33 H 0.064 0.936 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.075 0.925 39 H 0.103 0.897 40 H 0.132 0.868 41 H 0.101 0.899 42 H 0.236 0.764 43 H 0.114 0.886 44 H 0.107 0.893 45 H 0.112 0.888 46 H 0.073 0.927 47 H 0.030 0.970 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.023 -19.940 2.292 20.955 hybrid contribution -0.851 1.659 -0.738 2.005 sum 5.172 -18.281 1.553 19.062 Atomic orbital electron populations 1.70177 1.06772 1.25862 1.54665 1.25904 0.95892 1.01580 1.00428 0.85345 0.78823 0.80235 0.76867 1.19123 1.21751 1.21660 1.19392 0.92449 0.86239 1.41667 0.92374 1.44226 1.44114 1.04014 1.40984 1.20484 0.89418 0.96271 0.88456 1.22033 1.00486 0.96813 0.97974 1.21459 0.97994 0.95939 0.98128 1.21491 0.97796 0.94576 0.96637 0.93188 1.21062 0.98481 0.93524 0.95834 1.21966 0.98979 0.96310 0.99528 1.22418 1.03402 0.87379 0.90069 1.48143 1.22295 1.33525 1.28815 1.16849 0.80126 0.81395 0.83326 1.90852 1.76052 1.36405 1.39252 1.22240 0.98563 1.09766 0.89023 1.24278 0.90851 1.00640 0.97691 1.74994 1.23713 1.14021 1.03125 1.78180 0.89130 1.16372 1.20821 1.46564 1.13117 1.40416 1.09358 0.67532 1.21828 0.91070 0.98045 0.89651 1.21979 1.02566 0.93459 0.98140 1.21120 0.96993 0.85720 0.93484 0.94113 0.95056 0.98505 0.93631 0.91580 0.90191 0.92425 0.89600 0.92545 0.89681 0.86766 0.89931 0.76399 0.88598 0.89333 0.88788 0.92654 0.97001 0.93079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.68 11.76 21.65 0.25 -54.43 16 2 C -0.04 -2.29 4.86 84.86 0.41 -1.88 16 3 Si 0.96 44.36 29.59 68.60 2.03 46.39 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 6 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.27 -14.45 9.49 84.03 0.80 -13.66 16 8 H 0.06 3.10 7.89 -2.91 -0.02 3.08 16 9 N -0.61 -29.54 2.95 -699.09 -2.06 -31.60 16 10 C 0.18 8.40 5.28 86.37 0.46 8.86 16 11 C -0.13 -4.69 6.08 30.68 0.19 -4.50 16 12 C -0.10 -2.67 4.86 30.62 0.15 -2.52 16 13 C -0.08 -2.36 1.92 -10.71 -0.02 -2.38 16 14 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 15 C -0.07 -1.28 1.74 -10.77 -0.02 -1.30 16 16 C -0.13 -2.15 5.05 30.67 0.15 -1.99 16 17 C 0.09 0.96 5.67 86.36 0.49 1.45 16 18 N -0.60 -8.57 2.97 -823.00 -2.45 -11.01 16 19 C 0.60 11.09 7.67 86.61 0.66 11.75 16 20 O -0.55 -13.64 16.41 -4.09 -0.07 -13.70 16 21 C -0.06 -1.04 6.56 40.40 0.27 -0.77 16 22 C 0.02 0.46 11.95 84.18 1.01 1.47 16 23 N -0.29 -6.49 12.35 -57.50 -0.71 -7.20 16 24 N -0.06 -1.26 13.35 37.02 0.49 -0.76 16 25 N -0.36 -4.99 5.84 -48.52 -0.28 -5.28 16 26 H 0.47 3.30 6.20 -219.90 -1.36 1.94 16 27 C 0.12 1.57 6.43 86.36 0.56 2.13 16 28 C -0.12 -1.92 5.05 30.67 0.15 -1.77 16 29 C 0.15 5.65 5.27 86.36 0.46 6.11 16 30 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.03 1.67 6.62 -2.38 -0.02 1.66 16 32 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 1.72 6.34 -2.39 -0.02 1.70 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 38 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 1.52 6.49 -2.38 -0.02 1.50 16 40 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.08 0.74 3.62 -2.39 -0.01 0.73 16 42 H 0.22 3.05 8.06 -2.91 -0.02 3.02 16 43 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 1.42 7.00 -2.39 -0.02 1.40 16 45 H 0.09 1.31 6.34 -2.39 -0.02 1.29 16 46 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 48 H 0.05 1.87 6.51 -2.39 -0.02 1.86 16 Total: -1.00 -71.91 367.35 2.54 -69.36 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -0.38 Total: 7.24 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: 5.71 Total: 0.99 kcal Atomic # 7 Polarization: -105.53 SS G_CDS: -4.75 Total: -110.28 kcal Atomic # 8 Polarization: -13.64 SS G_CDS: -0.07 Total: -13.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.91 2.54 -69.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961385974.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.709 kcal (2) G-P(sol) polarization free energy of solvation -71.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds