Wall clock time and date at job start Tue Mar 31 2020 18:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48495 * 109.46754 * 270.00154 * 3 2 1 5 5 H 1.48493 * 109.47187 * 29.99927 * 3 2 1 6 6 H 1.48500 * 109.46580 * 150.00269 * 3 2 1 7 7 C 1.38806 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00227 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99533 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65235 * 345.37970 * 9 7 2 11 11 C 1.54904 * 104.83351 * 204.15211 * 10 9 7 12 12 C 1.55153 * 101.58245 * 322.98932 * 11 10 9 13 13 C 1.47022 * 125.64490 * 165.40729 * 9 7 2 14 14 H 1.09007 * 110.01145 * 59.43041 * 13 9 7 15 15 C 1.52991 * 109.88349 * 298.33552 * 13 9 7 16 16 H 1.09005 * 109.50446 * 63.33307 * 15 13 9 17 17 C 1.53041 * 109.49806 * 303.23353 * 15 13 9 18 18 C 1.53042 * 109.53787 * 178.68181 * 17 15 13 19 19 C 1.52763 * 109.38256 * 61.24532 * 18 17 15 20 20 N 1.46925 * 109.00501 * 305.58198 * 19 18 17 21 21 C 1.34770 * 120.63144 * 233.58146 * 20 19 18 22 22 O 1.21279 * 120.00136 * 179.72272 * 21 20 19 23 23 C 1.50702 * 120.00230 * 359.72668 * 21 20 19 24 24 N 1.46495 * 109.47427 * 179.97438 * 23 21 20 25 25 N 1.28602 * 124.61791 * 269.70141 * 24 23 21 26 26 C 1.31386 * 108.71760 * 179.82979 * 25 24 23 27 27 C 1.39674 * 105.89696 * 0.41085 * 26 25 24 28 28 N 1.28603 * 124.61987 * 89.99657 * 24 23 21 29 29 C 1.46929 * 118.73690 * 53.31530 * 20 19 18 30 30 H 0.97002 * 120.00032 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36793 * 85.31011 * 10 9 7 32 32 H 1.09007 * 110.45712 * 323.03590 * 10 9 7 33 33 H 1.09000 * 111.00837 * 204.91181 * 11 10 9 34 34 H 1.09005 * 111.00344 * 81.06851 * 11 10 9 35 35 H 1.08989 * 110.71934 * 277.13651 * 12 11 10 36 36 H 1.09002 * 110.72174 * 153.86240 * 12 11 10 37 37 H 1.08998 * 109.45968 * 298.70518 * 17 15 13 38 38 H 1.09000 * 109.45877 * 58.67788 * 17 15 13 39 39 H 1.09003 * 109.49176 * 181.31621 * 18 17 15 40 40 H 1.08998 * 109.49921 * 301.38160 * 18 17 15 41 41 H 1.09004 * 109.51057 * 185.70281 * 19 18 17 42 42 H 1.09003 * 109.43245 * 65.42133 * 19 18 17 43 43 H 1.09001 * 109.47090 * 59.99248 * 23 21 20 44 44 H 1.09004 * 109.46931 * 299.99531 * 23 21 20 45 45 H 1.07997 * 127.04797 * 180.15635 * 26 25 24 46 46 H 1.08002 * 127.04914 * 179.77046 * 27 26 25 47 47 H 1.09001 * 109.58640 * 66.42577 * 29 20 19 48 48 H 1.08995 * 109.58592 * 186.70965 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1077 -2.5527 0.3023 11 6 -0.2470 -4.0212 0.7752 12 6 0.7648 -4.7444 -0.1524 13 6 1.8984 -3.7081 -0.3021 14 1 2.7026 -3.9346 0.3982 15 6 2.4353 -3.7274 -1.7346 16 1 3.2488 -3.0079 -1.8281 17 6 1.3119 -3.3583 -2.7061 18 6 1.8560 -3.3453 -4.1365 19 6 2.3687 -4.7386 -4.4966 20 7 3.3434 -5.1663 -3.4838 21 6 4.5743 -5.5785 -3.8462 22 8 5.3716 -5.9243 -3.0003 23 6 4.9600 -5.6098 -5.3027 24 7 6.3376 -6.0907 -5.4329 25 7 7.3784 -5.3353 -5.4309 26 6 8.4466 -6.0889 -5.5622 27 6 7.9793 -7.4017 -5.6578 28 7 6.6706 -7.3253 -5.5701 29 6 2.9528 -5.1303 -2.0678 30 1 -0.4850 0.8401 0.0004 31 1 -0.7064 -2.3839 -0.5927 32 1 -0.4106 -1.8685 1.0951 33 1 -1.2596 -4.3899 0.6118 34 1 0.0402 -4.1235 1.8218 35 1 0.3126 -4.9638 -1.1195 36 1 1.1351 -5.6559 0.3170 37 1 0.5097 -4.0923 -2.6294 38 1 0.9254 -2.3704 -2.4559 39 1 1.0611 -3.0596 -4.8254 40 1 2.6744 -2.6289 -4.2080 41 1 2.8480 -4.7085 -5.4751 42 1 1.5331 -5.4382 -4.5180 43 1 4.8850 -4.6057 -5.7201 44 1 4.2889 -6.2785 -5.8420 45 1 9.4748 -5.7602 -5.5944 46 1 8.5722 -8.2963 -5.7785 47 1 2.1658 -5.8625 -1.8872 48 1 3.8166 -5.3610 -1.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000963306981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:22 Heat of formation + Delta-G solvation = 107.687597 kcal Electronic energy + Delta-G solvation = -29773.264993 eV Core-core repulsion = 25866.918268 eV Total energy + Delta-G solvation = -3906.346725 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.65840 -40.35228 -38.44800 -36.53660 -34.03255 -32.92381 -32.52331 -32.34688 -31.35802 -29.41375 -28.70771 -26.66450 -25.16051 -24.55484 -23.00994 -22.76830 -22.15558 -21.23943 -20.24663 -19.34688 -18.40691 -17.93310 -17.44794 -16.68654 -16.09590 -15.84811 -15.50839 -15.12763 -14.92954 -14.63057 -14.39806 -14.24506 -14.06861 -13.83047 -13.43171 -13.19854 -12.91044 -12.49936 -12.20109 -12.12239 -11.88575 -11.76227 -11.59562 -11.17642 -10.92108 -10.91356 -10.86565 -10.77702 -10.48849 -10.43139 -10.31474 -10.27892 -10.09948 -9.94968 -9.74408 -9.67741 -9.48064 -9.35882 -8.61635 -8.58325 -6.77951 -5.76127 -3.10777 1.60417 2.00061 2.34976 2.39016 2.93121 3.37466 3.44237 3.45330 3.99333 4.08817 4.47439 4.55006 4.64549 4.73841 4.91960 5.04362 5.13071 5.18852 5.20779 5.34545 5.41690 5.50316 5.67169 5.70053 5.73911 5.76130 5.85238 5.88712 5.91080 6.02385 6.04353 6.10209 6.23611 6.32022 6.39794 6.47003 6.50910 6.58152 6.64150 6.74316 6.97136 6.99648 7.13382 7.24887 7.53974 7.62288 7.80111 7.93711 8.20189 8.27720 9.19866 9.80687 10.49686 11.35773 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003092 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.446016 B = 9054.522241 C = 9933.476750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.003 4.003 3 Si 0.905 3.095 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.224 4.224 8 H 0.072 0.928 9 N -0.590 5.590 10 C 0.175 3.825 11 C -0.150 4.150 12 C -0.130 4.130 13 C 0.168 3.832 14 H 0.033 0.967 15 C -0.104 4.104 16 H 0.070 0.930 17 C -0.105 4.105 18 C -0.136 4.136 19 C 0.104 3.896 20 N -0.599 5.599 21 C 0.502 3.498 22 O -0.526 6.526 23 C 0.123 3.877 24 N -0.143 5.143 25 N -0.279 5.279 26 C -0.026 4.026 27 C -0.027 4.027 28 N -0.283 5.283 29 C 0.116 3.884 30 H 0.252 0.748 31 H 0.025 0.975 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.198 0.802 46 H 0.197 0.803 47 H 0.069 0.931 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.832 -13.473 -12.975 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.200 4.200 3 Si 0.736 3.264 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.352 4.352 8 H 0.090 0.910 9 N -0.313 5.313 10 C 0.050 3.950 11 C -0.189 4.189 12 C -0.167 4.167 13 C 0.059 3.941 14 H 0.051 0.949 15 C -0.126 4.126 16 H 0.089 0.911 17 C -0.143 4.143 18 C -0.174 4.174 19 C -0.019 4.019 20 N -0.333 5.333 21 C 0.286 3.714 22 O -0.401 6.401 23 C -0.001 4.001 24 N -0.043 5.043 25 N -0.120 5.120 26 C -0.209 4.209 27 C -0.210 4.210 28 N -0.123 5.123 29 C -0.006 4.006 30 H 0.062 0.938 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.154 0.846 44 H 0.153 0.847 45 H 0.214 0.786 46 H 0.214 0.786 47 H 0.087 0.913 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.874 -12.950 -12.371 18.561 hybrid contribution 1.375 0.684 -0.175 1.546 sum 6.249 -12.266 -12.546 18.626 Atomic orbital electron populations 1.69936 1.04865 1.25047 1.56541 1.24842 0.95603 0.97564 1.01949 0.86220 0.78819 0.83786 0.77584 1.21612 1.21741 1.20696 1.18938 0.90263 0.82297 1.43743 0.91009 1.44457 1.06088 1.01060 1.79723 1.21396 0.85084 0.89944 0.98590 1.23012 0.97421 0.99810 0.98612 1.22683 0.97263 0.97207 0.99597 1.20871 0.94053 0.87338 0.91810 0.94944 1.21970 0.98452 0.94135 0.98024 0.91120 1.21482 0.97101 1.04061 0.91619 1.21887 1.01183 0.95194 0.99160 1.21809 0.92316 0.97515 0.90250 1.48123 1.12246 1.64012 1.08908 1.20335 0.82392 0.78495 0.90139 1.90774 1.49705 1.47685 1.51966 1.21782 0.76929 1.04083 0.97316 1.47356 1.06782 1.00862 1.49325 1.74081 0.94230 1.25809 1.17864 1.24791 0.98953 0.91043 1.06145 1.24770 0.90095 0.99676 1.06427 1.74024 1.16889 1.03537 1.17883 1.21890 1.00534 0.98644 0.79486 0.93777 0.95732 0.91368 0.92580 0.92508 0.91526 0.92600 0.92642 0.88995 0.90868 0.91567 0.90661 0.90747 0.84568 0.84690 0.78554 0.78571 0.91256 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.78 10.58 55.49 0.59 -25.20 16 2 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 3 Si 0.91 21.73 29.55 -169.99 -5.02 16.70 16 4 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.22 -5.94 9.87 -15.06 -0.15 -6.09 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.59 -13.95 2.23 -162.58 -0.36 -14.31 16 10 C 0.17 4.00 5.41 -2.54 -0.01 3.98 16 11 C -0.15 -2.71 7.08 -24.59 -0.17 -2.88 16 12 C -0.13 -2.12 5.09 -24.90 -0.13 -2.25 16 13 C 0.17 3.25 2.97 -66.96 -0.20 3.05 16 14 H 0.03 0.67 8.14 -51.92 -0.42 0.25 16 15 C -0.10 -1.79 2.10 -90.50 -0.19 -1.98 16 16 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 17 C -0.11 -1.69 4.75 -26.69 -0.13 -1.81 16 18 C -0.14 -1.67 6.06 -26.83 -0.16 -1.83 16 19 C 0.10 1.00 6.31 -3.93 -0.02 0.97 16 20 N -0.60 -7.71 2.98 -173.03 -0.52 -8.23 16 21 C 0.50 7.08 7.77 -10.99 -0.09 6.99 16 22 O -0.53 -9.86 15.84 5.56 0.09 -9.77 16 23 C 0.12 1.29 5.37 -5.20 -0.03 1.26 16 24 N -0.14 -1.90 3.44 -11.66 -0.04 -1.94 16 25 N -0.28 -3.84 12.05 30.67 0.37 -3.47 16 26 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 27 C -0.03 -0.28 12.20 -17.21 -0.21 -0.49 16 28 N -0.28 -3.72 12.05 30.67 0.37 -3.35 16 29 C 0.12 1.72 5.55 -3.71 -0.02 1.70 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.02 0.60 8.06 -51.93 -0.42 0.18 16 32 H 0.07 1.78 6.93 -51.93 -0.36 1.42 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.01 5.52 -51.94 -0.29 0.72 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.83 6.18 -51.93 -0.32 0.51 16 38 H 0.09 1.91 7.50 -51.93 -0.39 1.52 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 0.48 5.93 -51.93 -0.31 0.18 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.14 1.10 7.68 -51.93 -0.40 0.70 16 44 H 0.14 0.96 7.95 -51.93 -0.41 0.55 16 45 H 0.20 1.32 8.06 -52.49 -0.42 0.89 16 46 H 0.20 1.22 8.06 -52.49 -0.42 0.80 16 47 H 0.07 0.94 6.83 -51.93 -0.35 0.58 16 48 H 0.09 1.46 7.00 -51.93 -0.36 1.09 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -34.37 375.15 -8.07 -42.44 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -7.38 Total: 1.51 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.82 Total: -0.03 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: 0.41 Total: -56.51 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.37 -8.07 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963306981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.127 kcal (2) G-P(sol) polarization free energy of solvation -34.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds