Wall clock time and date at job start Tue Mar 31 2020 18:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86807 * 119.99600 * 2 1 4 4 H 1.48495 * 109.46754 * 270.00154 * 3 2 1 5 5 H 1.48493 * 109.47187 * 29.99927 * 3 2 1 6 6 H 1.48500 * 109.46580 * 150.00269 * 3 2 1 7 7 C 1.38806 * 120.00387 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00227 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99533 * 359.97438 * 7 2 1 10 10 C 1.47418 * 125.65235 * 345.37970 * 9 7 2 11 11 C 1.54904 * 104.83351 * 204.15211 * 10 9 7 12 12 C 1.55153 * 101.58245 * 322.98932 * 11 10 9 13 13 C 1.47022 * 125.64490 * 165.40729 * 9 7 2 14 14 H 1.09007 * 110.01145 * 59.43041 * 13 9 7 15 15 C 1.52991 * 109.88349 * 298.33552 * 13 9 7 16 16 H 1.09005 * 109.50446 * 63.33307 * 15 13 9 17 17 C 1.53041 * 109.49806 * 303.23353 * 15 13 9 18 18 C 1.53042 * 109.53787 * 178.68181 * 17 15 13 19 19 C 1.52763 * 109.38256 * 61.24532 * 18 17 15 20 20 N 1.46925 * 109.00501 * 305.58198 * 19 18 17 21 21 C 1.34770 * 120.63144 * 233.58146 * 20 19 18 22 22 O 1.21279 * 120.00136 * 179.72272 * 21 20 19 23 23 C 1.50702 * 120.00230 * 359.72668 * 21 20 19 24 24 N 1.46495 * 109.47427 * 179.97438 * 23 21 20 25 25 N 1.28602 * 124.61791 * 269.70141 * 24 23 21 26 26 C 1.31386 * 108.71760 * 179.82979 * 25 24 23 27 27 C 1.39674 * 105.89696 * 0.41085 * 26 25 24 28 28 N 1.28603 * 124.61987 * 89.99657 * 24 23 21 29 29 C 1.46929 * 118.73690 * 53.31530 * 20 19 18 30 30 H 0.97002 * 120.00032 * 359.97438 * 1 2 3 31 31 H 1.08996 * 110.36793 * 85.31011 * 10 9 7 32 32 H 1.09007 * 110.45712 * 323.03590 * 10 9 7 33 33 H 1.09000 * 111.00837 * 204.91181 * 11 10 9 34 34 H 1.09005 * 111.00344 * 81.06851 * 11 10 9 35 35 H 1.08989 * 110.71934 * 277.13651 * 12 11 10 36 36 H 1.09002 * 110.72174 * 153.86240 * 12 11 10 37 37 H 1.08998 * 109.45968 * 298.70518 * 17 15 13 38 38 H 1.09000 * 109.45877 * 58.67788 * 17 15 13 39 39 H 1.09003 * 109.49176 * 181.31621 * 18 17 15 40 40 H 1.08998 * 109.49921 * 301.38160 * 18 17 15 41 41 H 1.09004 * 109.51057 * 185.70281 * 19 18 17 42 42 H 1.09003 * 109.43245 * 65.42133 * 19 18 17 43 43 H 1.09001 * 109.47090 * 59.99248 * 23 21 20 44 44 H 1.09004 * 109.46931 * 299.99531 * 23 21 20 45 45 H 1.07997 * 127.04797 * 180.15635 * 26 25 24 46 46 H 1.08002 * 127.04914 * 179.77046 * 27 26 25 47 47 H 1.09001 * 109.58640 * 66.42577 * 29 20 19 48 48 H 1.08995 * 109.58592 * 186.70965 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 -0.1077 -2.5527 0.3023 11 6 -0.2470 -4.0212 0.7752 12 6 0.7648 -4.7444 -0.1524 13 6 1.8984 -3.7081 -0.3021 14 1 2.7026 -3.9346 0.3982 15 6 2.4353 -3.7274 -1.7346 16 1 3.2488 -3.0079 -1.8281 17 6 1.3119 -3.3583 -2.7061 18 6 1.8560 -3.3453 -4.1365 19 6 2.3687 -4.7386 -4.4966 20 7 3.3434 -5.1663 -3.4838 21 6 4.5743 -5.5785 -3.8462 22 8 5.3716 -5.9243 -3.0003 23 6 4.9600 -5.6098 -5.3027 24 7 6.3376 -6.0907 -5.4329 25 7 7.3784 -5.3353 -5.4309 26 6 8.4466 -6.0889 -5.5622 27 6 7.9793 -7.4017 -5.6578 28 7 6.6706 -7.3253 -5.5701 29 6 2.9528 -5.1303 -2.0678 30 1 -0.4850 0.8401 0.0004 31 1 -0.7064 -2.3839 -0.5927 32 1 -0.4106 -1.8685 1.0951 33 1 -1.2596 -4.3899 0.6118 34 1 0.0402 -4.1235 1.8218 35 1 0.3126 -4.9638 -1.1195 36 1 1.1351 -5.6559 0.3170 37 1 0.5097 -4.0923 -2.6294 38 1 0.9254 -2.3704 -2.4559 39 1 1.0611 -3.0596 -4.8254 40 1 2.6744 -2.6289 -4.2080 41 1 2.8480 -4.7085 -5.4751 42 1 1.5331 -5.4382 -4.5180 43 1 4.8850 -4.6057 -5.7201 44 1 4.2889 -6.2785 -5.8420 45 1 9.4748 -5.7602 -5.5944 46 1 8.5722 -8.2963 -5.7785 47 1 2.1658 -5.8625 -1.8872 48 1 3.8166 -5.3610 -1.4445 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000963306981.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:25:21 Heat of formation + Delta-G solvation = 84.741790 kcal Electronic energy + Delta-G solvation = -29774.259998 eV Core-core repulsion = 25866.918268 eV Total energy + Delta-G solvation = -3907.341730 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.191 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.48229 -41.48704 -39.88394 -37.85640 -35.01558 -34.58585 -33.73106 -33.38436 -32.56460 -31.23422 -29.69954 -28.06217 -26.49095 -26.23553 -24.03214 -23.81157 -23.14985 -22.45947 -21.88543 -20.58952 -19.75984 -18.90887 -18.58106 -18.31790 -17.14724 -16.94098 -16.79896 -16.40137 -16.29687 -15.79570 -15.68567 -15.55393 -15.24624 -15.11702 -14.61506 -14.23085 -14.20759 -13.82630 -13.65397 -13.44031 -13.30977 -13.17553 -12.88598 -12.77516 -12.56827 -12.47726 -12.04143 -11.95912 -11.84628 -11.79428 -11.76516 -11.64500 -11.48288 -11.35699 -11.32949 -11.15785 -10.94723 -10.64512 -10.24187 -9.73141 -8.75137 -7.85787 -5.19995 0.73215 1.23572 1.32947 1.41618 1.42351 1.50617 1.62535 1.96523 2.47758 3.19758 3.29271 3.32548 3.63937 3.78494 3.87781 3.94134 3.99532 4.07952 4.11495 4.16028 4.25978 4.28574 4.33319 4.42817 4.49279 4.58656 4.59391 4.74311 4.79660 4.83699 4.85717 4.91253 5.06911 5.08351 5.19630 5.21898 5.31601 5.35247 5.38663 5.48653 5.51558 5.59296 5.67249 5.68702 5.72209 5.83416 6.23703 6.27307 6.90186 7.14028 7.36934 7.82145 8.49142 9.24716 Molecular weight = 333.19amu Principal moments of inertia in cm(-1) A = 0.015352 B = 0.003092 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.446016 B = 9054.522241 C = 9933.476750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.053 4.053 3 Si 0.961 3.039 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.278 1.278 7 C -0.228 4.228 8 H 0.061 0.939 9 N -0.605 5.605 10 C 0.181 3.819 11 C -0.138 4.138 12 C -0.115 4.115 13 C 0.157 3.843 14 H 0.015 0.985 15 C -0.091 4.091 16 H 0.028 0.972 17 C -0.097 4.097 18 C -0.132 4.132 19 C 0.104 3.896 20 N -0.597 5.597 21 C 0.498 3.502 22 O -0.582 6.582 23 C 0.123 3.877 24 N -0.158 5.158 25 N -0.318 5.318 26 C -0.027 4.027 27 C -0.024 4.024 28 N -0.309 5.309 29 C 0.128 3.872 30 H 0.246 0.754 31 H 0.003 0.997 32 H 0.027 0.973 33 H 0.085 0.915 34 H 0.056 0.944 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.097 0.903 40 H 0.046 0.954 41 H 0.118 0.882 42 H 0.103 0.897 43 H 0.160 0.840 44 H 0.174 0.826 45 H 0.230 0.770 46 H 0.234 0.766 47 H 0.094 0.906 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.975 -15.961 -15.369 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.247 4.247 3 Si 0.791 3.209 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.358 4.358 8 H 0.079 0.921 9 N -0.329 5.329 10 C 0.056 3.944 11 C -0.176 4.176 12 C -0.152 4.152 13 C 0.050 3.950 14 H 0.033 0.967 15 C -0.113 4.113 16 H 0.047 0.953 17 C -0.135 4.135 18 C -0.170 4.170 19 C -0.017 4.017 20 N -0.329 5.329 21 C 0.285 3.715 22 O -0.461 6.461 23 C 0.000 4.000 24 N -0.058 5.058 25 N -0.158 5.158 26 C -0.210 4.210 27 C -0.207 4.207 28 N -0.150 5.150 29 C 0.005 3.995 30 H 0.056 0.944 31 H 0.021 0.979 32 H 0.045 0.955 33 H 0.104 0.896 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.122 0.878 43 H 0.178 0.822 44 H 0.191 0.809 45 H 0.246 0.754 46 H 0.250 0.750 47 H 0.112 0.888 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.998 -15.452 -14.793 21.968 hybrid contribution 1.413 1.449 0.613 2.115 sum 6.412 -14.003 -14.180 20.935 Atomic orbital electron populations 1.70114 1.05844 1.25053 1.57880 1.25470 0.96383 1.00183 1.02642 0.85337 0.77717 0.80424 0.77444 1.21313 1.21878 1.20377 1.19083 0.90065 0.83935 1.42710 0.92106 1.44622 1.06525 1.01774 1.80017 1.21180 0.84353 0.92549 0.96358 1.22893 0.99697 0.96176 0.98835 1.22656 0.95230 0.96840 1.00511 1.21079 0.94891 0.86321 0.92733 0.96721 1.21705 0.97529 0.94961 0.97088 0.95318 1.21333 0.96950 1.01310 0.93863 1.21846 1.01239 0.96990 0.96904 1.22103 0.92806 0.95847 0.90945 1.48193 1.12750 1.63425 1.08578 1.21033 0.81763 0.77244 0.91486 1.90744 1.51270 1.50253 1.53874 1.22058 0.76908 1.06477 0.94594 1.47587 1.07314 1.00821 1.50109 1.74041 0.95364 1.27170 1.19242 1.25460 0.99838 0.91115 1.04561 1.25468 0.89595 1.00907 1.04733 1.73983 1.18334 1.03828 1.18832 1.21592 1.00064 0.96939 0.80949 0.94426 0.97876 0.95470 0.89640 0.92491 0.89502 0.89640 0.90850 0.94398 0.88501 0.93469 0.86443 0.87849 0.82231 0.80901 0.75389 0.75012 0.88765 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.37 10.58 21.65 0.23 -55.14 16 2 C -0.05 -2.99 5.47 84.86 0.46 -2.52 16 3 Si 0.96 46.35 29.55 68.60 2.03 48.38 16 4 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 7 C -0.23 -12.76 9.87 84.03 0.83 -11.93 16 8 H 0.06 3.44 7.83 -2.91 -0.02 3.42 16 9 N -0.61 -29.94 2.23 -668.29 -1.49 -31.43 16 10 C 0.18 8.55 5.41 86.85 0.47 9.01 16 11 C -0.14 -4.79 7.08 31.98 0.23 -4.57 16 12 C -0.11 -3.51 5.09 31.78 0.16 -3.35 16 13 C 0.16 6.19 2.97 45.34 0.13 6.33 16 14 H 0.01 0.64 8.14 -2.38 -0.02 0.62 16 15 C -0.09 -3.20 2.10 -10.72 -0.02 -3.22 16 16 H 0.03 1.22 8.07 -2.38 -0.02 1.20 16 17 C -0.10 -3.08 4.75 30.62 0.15 -2.93 16 18 C -0.13 -2.97 6.06 30.53 0.19 -2.78 16 19 C 0.10 1.58 6.31 86.22 0.54 2.12 16 20 N -0.60 -14.11 2.98 -819.72 -2.44 -16.55 16 21 C 0.50 13.34 7.77 87.66 0.68 14.02 16 22 O -0.58 -21.95 15.84 -3.03 -0.05 -22.00 16 23 C 0.12 2.24 5.37 85.63 0.46 2.69 16 24 N -0.16 -3.95 3.44 -190.81 -0.66 -4.60 16 25 N -0.32 -8.35 12.05 -56.86 -0.69 -9.04 16 26 C -0.03 -0.52 12.20 85.11 1.04 0.52 16 27 C -0.02 -0.45 12.20 85.11 1.04 0.59 16 28 N -0.31 -7.56 12.05 -56.87 -0.69 -8.25 16 29 C 0.13 3.66 5.55 86.36 0.48 4.13 16 30 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.00 0.16 8.06 -2.39 -0.02 0.15 16 32 H 0.03 1.48 6.93 -2.38 -0.02 1.47 16 33 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 35 H 0.09 2.33 5.52 -2.39 -0.01 2.31 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.17 16 37 H 0.07 2.04 6.18 -2.39 -0.01 2.02 16 38 H 0.04 1.62 7.50 -2.39 -0.02 1.61 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.12 0.87 5.93 -2.39 -0.01 0.86 16 42 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.16 2.07 7.68 -2.39 -0.02 2.05 16 44 H 0.17 1.71 7.95 -2.38 -0.02 1.69 16 45 H 0.23 2.49 8.06 -2.91 -0.02 2.46 16 46 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 47 H 0.09 2.25 6.83 -2.39 -0.02 2.24 16 48 H 0.06 2.11 7.00 -2.39 -0.02 2.10 16 Total: -1.00 -82.79 375.15 4.05 -78.74 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.96 Total: 11.79 kcal Atomic # 6 Polarization: 1.28 SS G_CDS: 6.83 Total: 8.11 kcal Atomic # 7 Polarization: -119.28 SS G_CDS: -5.73 Total: -125.01 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.05 Total: -22.00 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -82.79 4.05 -78.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000963306981.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.483 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds